# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhxA 246 2.40e-01 1m2xA 223 3.05e-01 d.157.1.1 84764 1x8hA 228 3.58e-01 1yhfA 115 4.61e-01 1wh0A 134 5.10e-01 1zn8A 180 5.88e-01 1jjtA 228 7.59e-01 1a7tA d.157.1.1 63139 2c78A 405 8.49e-01 1j3mA 129 9.94e-01 d.129.7.1 103836 1p9bA 442 1.95e+00 c.37.1.10 94385 1oaqL 120 2.48e+00 b.1.1.1 92708 1ok0A 74 2.48e+00 b.5.1.1 93191 1tu7A 208 3.03e+00 1zmaA 118 3.12e+00 1y7rA 133 3.15e+00 1r7lA 110 3.17e+00 d.277.1.1 104837 1oalA 151 4.08e+00 b.1.8.1 86739 1q2yA 140 4.20e+00 d.108.1.1 95655 1914 232 4.35e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1kk1A 410 4.76e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1gvp 87 4.94e+00 1gvp b.40.4.7 25369 1ukgA 252 5.38e+00 b.29.1.1 99489 1x8gA 227 5.48e+00 1jmtA 104 5.82e+00 d.58.7.3 63180 1vkkA 154 5.86e+00 d.109.1.2 108669 1ooeA 236 5.86e+00 c.2.1.2 87196 2fuqA 747 7.11e+00 1r29A 127 8.79e+00 d.42.1.1 96856 1vkyA 347 9.04e+00 e.53.1.1 108696 1qcsA 211 1.12e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 3tss 194 1.18e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1uldA 150 1.34e+01 b.29.1.3 99545 1dyoA 160 1.42e+01 1dyoA b.18.1.7 23771 1zuoA 186 1.46e+01 1plc 99 1.46e+01 1plc b.6.1.1 22846 1z8gA 372 1.51e+01 1v5rA 97 1.60e+01 1r6vA 671 1.75e+01 2crvA 120 1.78e+01 1lo6A 223 1.80e+01 b.47.1.2 74143 1gv9A 260 1.87e+01 b.29.1.13 70596 1fvuB 125 2.01e+01 1ixxB d.169.1.1 42346 1m3uA 264 2.10e+01 c.1.12.8 84784 1hnjA 317 2.12e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 2bz6H 254 2.27e+01 1vqqA 646 2.27e+01 1j7xA 302 2.44e+01 c.14.1.2 66425 1fecA 490 2.51e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2dd8S 202 2.61e+01 1ve6A 582 2.67e+01 2bjdA 101 2.68e+01 2a6tA 271 2.71e+01 1gadO 330 2.74e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1dkuA 317 2.97e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1v3eA 431 3.03e+01 b.68.1.1 100287 1bjt 793 3.16e+01 1bjt e.11.1.1 43249 1rsgA 516 3.31e+01 1mqoA 227 3.33e+01 d.157.1.1 103846 1vk3A 615 3.34e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1k8kD 300 3.38e+01 d.198.2.1,d.198.2.1 68309,68310 1pz4A 116 3.40e+01 d.106.1.1 95400 1zr6A 503 3.45e+01 1c7gA 456 3.53e+01 c.67.1.2 90415 1y0nA 78 3.58e+01 1ew4A 106 3.63e+01 1ew4A d.82.2.1 40023 1ulrA 88 3.64e+01 1ufwA 95 3.66e+01 d.58.7.1 99358 1yxmA 303 3.66e+01 1ikpA 613 3.73e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1vkcA 158 3.79e+01 1osdA 72 3.80e+01 d.58.17.1 104022 1mxgA 435 3.81e+01 b.71.1.1,c.1.8.1 85193,85194 1vfvA 366 3.83e+01 c.37.1.9 108592 1gxuA 91 3.84e+01 d.58.10.1 76378 1jyoA 130 3.90e+01 d.198.1.1 67483 1y9qA 192 3.95e+01 1h8dH 260 3.99e+01 5ptp 1osyA 115 4.05e+01 b.1.21.1 93502 1cr1A 296 4.10e+01 1cr1A c.37.1.11 32286 2bjrA 368 4.47e+01 1xe7A 203 4.64e+01 1kte 105 4.64e+01 1kte c.47.1.1 32771 1eajA 126 4.68e+01 1f5wA b.1.1.1 59401 1v70A 105 4.68e+01 1vzqH 250 4.71e+01 2ar1A 172 4.72e+01 1zv1A 65 4.85e+01 1xtmA 175 4.99e+01 2alaA 391 5.02e+01 1va4A 279 5.04e+01 c.69.1.12 108458 2gqrA 237 5.10e+01 1w2iA 91 5.13e+01 d.58.10.1 109127 1vjw 60 5.27e+01 1fxd d.58.1.4 38991 1c01A 76 5.30e+01 1c01A b.11.1.5 23633 1snnA 227 5.35e+01 d.115.1.2 105821 1fltX 95 5.43e+01 1fltX b.1.1.4 21765 2fs2A 151 5.51e+01 1t0aA 159 5.57e+01 2cwsA 237 5.61e+01 1yb3A 175 5.73e+01 2b95A 106 5.77e+01 3bamA 213 5.81e+01 1bam c.52.1.3 33288 1vjqA 79 5.86e+01 k.43.1.1 100830 1q6oA 216 5.96e+01 c.1.2.3 95986 1f39A 101 6.15e+01 1umuA b.87.1.1 28386 1mdbA 539 6.16e+01 e.23.1.1 79008 1th0A 226 6.21e+01 d.3.1.7 106903 1ayaA 101 6.41e+01 1qadA d.93.1.1 40460 1sj1A 66 6.52e+01 d.58.1.4 105595 1jeyB 565 6.64e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1sf8A 126 6.78e+01 d.271.1.1 105472 1ojqA 212 6.91e+01 d.166.1.1 93146 1uypA 432 6.98e+01 b.29.1.19,b.67.2.3 100176,100177 1weyA 104 6.99e+01 1m98A 317 7.03e+01 a.175.1.1,d.17.4.6 78866,78867 1kpf 126 7.23e+01 1kpf d.13.1.1 37507 1yhpA 212 7.31e+01 2d7nA 93 7.31e+01 2c2aA 258 7.46e+01 2ganA 190 7.62e+01 1xn5A 146 7.66e+01 2bx6A 350 7.71e+01 1id0A 152 7.72e+01 d.122.1.3 66111 1m0wA 491 7.72e+01 c.30.1.4,d.142.1.6 78363,78364 1in0A 163 7.73e+01 d.58.49.1,d.58.49.1 83694,83695 1fqtA 112 7.79e+01 1fqtA b.33.1.1 24441 1wspA 84 7.88e+01 2fl4A 149 7.96e+01 1l5xA 280 8.07e+01 c.106.1.1 77718 1buoA 121 8.09e+01 1buoA d.42.1.1 38631 1suwA 249 8.20e+01 e.52.1.1 106027 1y8tA 324 8.43e+01 1ww7A 160 8.43e+01 2apjA 260 8.44e+01 1wdeA 294 8.45e+01 1g6hA 257 8.53e+01 1gajA c.37.1.12 60318 1e3dA 266 8.59e+01 2frvA e.19.1.1 59188 1e9pA 151 8.60e+01 1mfmA b.1.8.1 22215 1x3qA 57 8.61e+01 2b5iC 199 8.65e+01 1cd9B 215 8.89e+01 1cto b.1.2.1,b.1.2.1 22041,22042 1r9fA 136 8.99e+01 d.255.1.1 97257