# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oaqL 120 9.04e-02 b.1.1.1 92708 1yhfA 115 2.54e-01 1ok0A 74 3.14e-01 b.5.1.1 93191 1zn8A 180 3.18e-01 1yhpA 212 2.56e+00 1z6bA 154 2.61e+00 1ifrA 121 2.70e+00 b.1.16.1 71203 1m2xA 223 2.76e+00 d.157.1.1 84764 1ojqA 212 3.07e+00 d.166.1.1 93146 1oalA 151 3.32e+00 b.1.8.1 86739 2d7nA 93 3.38e+00 1nqeA 594 4.13e+00 f.4.3.3 86027 2fs2A 151 4.23e+00 1z0sA 278 5.12e+00 1suwA 249 5.14e+00 e.52.1.1 106027 1914 232 5.27e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1wh0A 134 5.83e+00 1h8eD 482 5.92e+00 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1o4tA 133 5.96e+00 b.82.1.9 86622 1vkyA 347 6.04e+00 e.53.1.1 108696 1h54A 754 6.15e+00 a.102.1.4,b.30.5.3 60634,60635 2c78A 405 6.42e+00 1p9bA 442 6.87e+00 c.37.1.10 94385 1fs0E 138 6.98e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 1ukgA 252 7.13e+00 b.29.1.1 99489 2bwrA 401 7.33e+00 2fhxA 246 7.70e+00 2ck3D 482 7.75e+00 1y7rA 133 7.80e+00 1x8hA 228 7.88e+00 1osyA 115 8.33e+00 b.1.21.1 93502 1dq3A 454 8.77e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1uwcA 261 1.03e+01 c.69.1.17 100101 1e8pA 46 1.12e+01 g.55.1.1 59385 2cw8A 537 1.17e+01 2gpzA 111 1.23e+01 1zkiA 133 1.26e+01 1wruA 379 1.28e+01 2brcA 214 1.36e+01 1plc 99 1.45e+01 1plc b.6.1.1 22846 1v5rA 97 1.52e+01 1tlyA 278 1.52e+01 f.4.6.1 107143 1uebA 184 1.52e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1qznA 173 1.56e+01 b.2.2.2 104669 1eajA 126 1.62e+01 1f5wA b.1.1.1 59401 1tu7A 208 1.65e+01 1m8aA 70 1.70e+01 d.9.1.1 74579 2evbA 74 1.71e+01 1bx1A 314 1.75e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1bb9 115 1.76e+01 1bb9 b.34.2.1 24554 1fnd 314 1.76e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1zkkA 167 1.85e+01 2d4qA 257 1.86e+01 1pz4A 116 1.88e+01 d.106.1.1 95400 1o9yA 84 1.93e+01 b.139.1.1 92692 1zldA 120 2.01e+01 1qcsA 211 2.02e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1dyoA 160 2.11e+01 1dyoA b.18.1.7 23771 1tbuA 118 2.23e+01 1wbiA 129 2.31e+01 1q87A 221 2.35e+01 e.47.1.1 96192 1nqzA 194 2.56e+01 d.113.1.1 86077 2d1eA 248 2.56e+01 1uaiA 224 2.70e+01 b.29.1.18 107761 1kk1A 410 2.76e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1gk9B 557 2.79e+01 1y9qA 192 2.83e+01 1vkkA 154 2.91e+01 d.109.1.2 108669 1pzgA 331 3.01e+01 c.2.1.5,d.162.1.1 95425,95426 1upqA 123 3.02e+01 2bjfA 329 3.13e+01 1lu4A 136 3.14e+01 c.47.1.10 91124 1fvuB 125 3.14e+01 1ixxB d.169.1.1 42346 1qz8A 113 3.31e+01 b.140.1.1 96619 1kbvA 327 3.31e+01 b.6.1.3,b.6.1.3 68395,68396 1cv8 174 3.42e+01 1cv8 d.3.1.1 37089 1zm0A 114 3.44e+01 1c01A 76 3.56e+01 1c01A b.11.1.5 23633 1kb0A 677 3.62e+01 a.3.1.6,b.70.1.1 68378,68379 1hnjA 317 3.64e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1i88A 389 3.65e+01 c.95.1.2,c.95.1.2 66070,66071 1k7iA 479 3.74e+01 b.80.7.1,d.92.1.6 77281,77282 2crvA 120 3.78e+01 2bgoA 140 3.80e+01 1xe1A 116 3.84e+01 b.43.3.1 109571 1neu 124 3.89e+01 1neu b.1.1.1 19704 1mspA 126 3.95e+01 1mspA b.1.11.2 22333 1cqxA 403 3.96e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1qqp3 220 4.03e+01 1qqp3 1u5uA 374 4.08e+01 1v70A 105 4.30e+01 1sjdA 368 4.37e+01 c.1.11.2,d.54.1.1 105632,105633 1hpcA 131 4.39e+01 1htp b.84.1.1 28221 1rsgA 516 4.39e+01 1avyA 74 4.44e+01 1avyB h.1.17.1 45656 1khbA 625 4.44e+01 c.91.1.1,c.109.1.1 68606,68607 2alaA 391 4.46e+01 1j7xA 302 4.74e+01 c.14.1.2 66425 1z8gA 372 4.75e+01 1fsgA 233 4.81e+01 1qk3A c.61.1.1 34029 1h9oA 112 5.02e+01 1qadA d.93.1.1 60837 1xr4A 509 5.09e+01 1e9pA 151 5.14e+01 1mfmA b.1.8.1 22215 1pne 140 5.18e+01 1pne d.110.1.1 40866 1fjgL 135 5.20e+01 1fjfL b.40.4.5 25346 2gaeA 346 5.21e+01 1rwrA 301 5.24e+01 b.80.1.11 97990 1j05A 111 5.32e+01 b.1.1.1 90735 1zh5A 195 5.52e+01 1quqB 121 5.52e+01 1quqB b.40.4.3 25305 1mqoA 227 5.58e+01 d.157.1.1 103846 1kgcD 206 5.59e+01 b.1.1.1,b.1.1.2 77384,77385 1n12A 138 5.62e+01 b.2.3.2 79779 2bw2A 140 5.63e+01 1wspA 84 5.68e+01 1gkpA 458 5.74e+01 b.92.1.3,c.1.9.6 70231,70232 1jjtA 228 5.75e+01 1a7tA d.157.1.1 63139 1ygtA 111 5.77e+01 1gv9A 260 5.78e+01 b.29.1.13 70596 1yg9A 330 5.79e+01 1uylA 236 5.80e+01 d.122.1.1 108147 2fl4A 149 5.81e+01 1xruA 282 5.87e+01 1aapA 58 5.99e+01 1bpi g.8.1.1 44543 1i8aA 189 6.07e+01 1i82A b.1.9.2 61951 2cvhA 220 6.20e+01 1zhxA 438 6.30e+01 1i1jA 108 6.43e+01 1i1jA b.34.2.1 61531 1earA 147 6.48e+01 b.107.1.1,d.58.38.1 64875,64876 1xfcA 384 6.67e+01 1t77A 414 6.69e+01 1txkA 498 6.80e+01 b.1.18.2,b.30.5.9 107425,107426 1gvp 87 6.85e+01 1gvp b.40.4.7 25369 1owxA 121 6.97e+01 d.58.7.1 87494 1gr3A 160 7.06e+01 b.22.1.1 65476 1mexH 215 7.08e+01 b.1.1.1,b.1.1.2 91257,91258 1olmA 403 7.22e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2f4lA 297 7.43e+01 1q8iA 783 7.64e+01 c.55.3.5,e.8.1.1 96208,96209 2bh1A 250 7.79e+01 2bgcA 238 7.83e+01 1yb3A 175 7.94e+01 2fgeA 995 8.01e+01 1y55X 126 8.09e+01 1umhA 184 8.11e+01 b.18.1.21 99605 1jeyA 609 8.11e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1ub1A 133 8.33e+01 d.10.1.3 99140 1dv1A 449 8.40e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1kapP 479 8.45e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1ofdA 1520 8.57e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1ux6A 350 8.58e+01 b.29.1.16,g.75.1.1 100145,100146 2f8mA 244 8.69e+01 1yrtA 364 8.70e+01 1y43A 39 8.92e+01