# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zn8A 180 7.86e-02 1yhfA 115 1.35e-01 1ok0A 74 1.45e-01 b.5.1.1 93191 1h8eD 482 2.11e-01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 2ck3D 482 3.30e-01 1oaqL 120 4.53e-01 b.1.1.1 92708 2fhxA 246 4.55e-01 2c78A 405 5.76e-01 1osyA 115 6.56e-01 b.1.21.1 93502 1ifrA 121 7.53e-01 b.1.16.1 71203 2fs2A 151 8.82e-01 1kk1A 410 1.10e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1ojqA 212 1.32e+00 d.166.1.1 93146 1suwA 249 1.50e+00 e.52.1.1 106027 1z0sA 278 1.52e+00 1yhpA 212 1.59e+00 1o9yA 84 2.18e+00 b.139.1.1 92692 2d1eA 248 2.36e+00 1vkyA 347 2.78e+00 e.53.1.1 108696 1bx1A 314 2.90e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnd 314 3.10e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 2d4qA 257 3.41e+00 1y55X 126 3.70e+00 1m2xA 223 3.90e+00 d.157.1.1 84764 1z6bA 154 3.91e+00 1wbiA 129 4.09e+00 1h54A 754 4.33e+00 a.102.1.4,b.30.5.3 60634,60635 1zkkA 167 4.52e+00 1wruA 379 4.59e+00 1wh0A 134 4.60e+00 2d7nA 93 5.10e+00 1z8gA 372 6.59e+00 1tbuA 118 6.63e+00 1xe1A 116 7.15e+00 b.43.3.1 109571 1nqeA 594 7.36e+00 f.4.3.3 86027 2bz6H 254 7.69e+00 2brcA 214 7.73e+00 2alaA 391 7.76e+00 1qcsA 211 7.90e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1gr3A 160 7.95e+00 b.22.1.1 65476 1fs0E 138 7.96e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 1faoA 126 8.02e+00 1faoA b.55.1.1 26974 1yb3A 175 8.21e+00 1z47A 355 8.37e+00 1sjdA 368 9.17e+00 c.1.11.2,d.54.1.1 105632,105633 1fvuB 125 1.03e+01 1ixxB d.169.1.1 42346 1bqk 124 1.05e+01 1bqk b.6.1.1 22889 1rsgA 516 1.10e+01 1khbA 625 1.10e+01 c.91.1.1,c.109.1.1 68606,68607 2cw8A 537 1.13e+01 1pz4A 116 1.14e+01 d.106.1.1 95400 1onwA 390 1.20e+01 b.92.1.7,c.1.9.13 87172,87173 1kb0A 677 1.21e+01 a.3.1.6,b.70.1.1 68378,68379 1quqB 121 1.27e+01 1quqB b.40.4.3 25305 1dq3A 454 1.27e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2f4lA 297 1.27e+01 2bgoA 140 1.28e+01 1e8pA 46 1.29e+01 g.55.1.1 59385 1h9oA 112 1.32e+01 1qadA d.93.1.1 60837 1zkiA 133 1.34e+01 1hnjA 317 1.38e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1jjtA 228 1.39e+01 1a7tA d.157.1.1 63139 1yukA 103 1.51e+01 1neu 124 1.52e+01 1neu b.1.1.1 19704 1m8aA 70 1.53e+01 d.9.1.1 74579 1cqxA 403 1.59e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2crvA 120 1.60e+01 1ca1 370 1.70e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1uebA 184 1.71e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 1gttA 429 1.73e+01 d.177.1.1,d.177.1.1 70529,70530 1dv1A 449 1.73e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1xypA 190 1.77e+01 1axkA b.29.1.11 24327 1vkcA 158 1.79e+01 1k7iA 479 1.84e+01 b.80.7.1,d.92.1.6 77281,77282 1pkoA 139 1.85e+01 b.1.1.1 88147 1eajA 126 1.87e+01 1f5wA b.1.1.1 59401 1plc 99 1.90e+01 1plc b.6.1.1 22846 1dkuA 317 1.92e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1xfcA 384 1.98e+01 1ukgA 252 1.98e+01 b.29.1.1 99489 1lvmA 229 2.00e+01 b.47.1.3 78243 2cvhA 220 2.02e+01 1y7rA 133 2.04e+01 1wwcA 118 2.05e+01 1wwcA b.1.1.4 21778 2sfa 191 2.06e+01 1qq4A b.47.1.1 25815 2b3nA 159 2.09e+01 1olmA 403 2.11e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2as0A 396 2.14e+01 1vb0A 61 2.14e+01 1avyA 74 2.15e+01 1avyB h.1.17.1 45656 1cjaA 342 2.16e+01 1cjaA d.144.1.3 41708 1ji6A 589 2.18e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1n6aA 259 2.20e+01 b.76.2.1,b.85.7.1 80121,80122 1xdnA 277 2.28e+01 1y9qA 192 2.28e+01 1owxA 121 2.29e+01 d.58.7.1 87494 2evbA 74 2.29e+01 2bjfA 329 2.30e+01 1x8hA 228 2.40e+01 1sgpE 185 2.41e+01 1qq4A b.47.1.1 25816 1o7iA 119 2.46e+01 b.40.4.3 86642 1o9wA 177 2.47e+01 b.2.3.5 86713 1f60A 458 2.50e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1bb9 115 2.51e+01 1bb9 b.34.2.1 24554 1xruA 282 2.55e+01 1o91A 178 2.56e+01 b.22.1.1 92656 1eybA 471 2.57e+01 1ey2A b.82.1.4 28115 2f69A 261 2.63e+01 1uaiA 224 2.71e+01 b.29.1.18 107761 1kapP 479 2.72e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1d0dA 60 2.74e+01 1kigI g.8.1.2 44566 1sheA 103 2.75e+01 d.274.1.1 105551 1i88A 389 2.75e+01 c.95.1.2,c.95.1.2 66070,66071 1wloA 136 2.76e+01 2f57A 317 2.79e+01 1kbvA 327 2.80e+01 b.6.1.3,b.6.1.3 68395,68396 1ycsB 239 2.81e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1ub1A 133 2.81e+01 d.10.1.3 99140 1oalA 151 2.89e+01 b.1.8.1 86739 1t77A 414 2.90e+01 1o4tA 133 2.96e+01 b.82.1.9 86622 1rwrA 301 2.96e+01 b.80.1.11 97990 1aisA 182 3.03e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1pm1X 180 3.04e+01 b.60.1.1 104189 1umhA 184 3.08e+01 b.18.1.21 99605 1c9oA 66 3.12e+01 1mjc b.40.4.5 25325 1umwA 237 3.22e+01 d.223.1.2,d.223.1.2 99631,99632 2fl4A 149 3.22e+01 1lm8V 160 3.23e+01 b.3.3.1 74035 1z9lA 128 3.26e+01 1v1hA 103 3.31e+01 b.83.1.1,h.1.17.1 108243,108244 2eifA 136 3.31e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1vzqH 250 3.39e+01 1q87A 221 3.40e+01 e.47.1.1 96192 1gvp 87 3.44e+01 1gvp b.40.4.7 25369 1jnyA 435 3.45e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1wzaA 488 3.56e+01 1vr7A 142 3.59e+01 1q0qA 406 3.68e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2g1lA 104 3.69e+01 1c01A 76 3.73e+01 1c01A b.11.1.5 23633 1t2bA 397 3.80e+01 1hpcA 131 3.81e+01 1htp b.84.1.1 28221 1v70A 105 3.82e+01 2dd8S 202 3.82e+01 1o97C 264 3.87e+01 c.26.2.3 81232 1xnkA 196 3.87e+01 1pyaB 228 3.87e+01 1pyaB 1khoA 370 3.90e+01 a.124.1.1,b.12.1.3 72489,72490 1lo6A 223 3.92e+01 b.47.1.2 74143 1sqwA 188 3.93e+01 1wluA 136 3.93e+01 1gv9A 260 4.06e+01 b.29.1.13 70596 1mspA 126 4.09e+01 1mspA b.1.11.2 22333 1e2wA 251 4.14e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1lmrA 35 4.19e+01 g.3.6.3 91081 2bolA 314 4.36e+01 1odmA 331 4.39e+01 b.82.2.1 86875 2c34A 116 4.41e+01 1fsgA 233 4.45e+01 1qk3A c.61.1.1 34029 1quqA 129 4.48e+01 1quqA b.40.4.3 25303 1j1yA 136 4.48e+01 d.38.1.5 90776 1v5rA 97 4.50e+01 1xr4A 509 4.56e+01 1ed7A 45 4.58e+01 1ed7A b.72.2.1 27809 2fb1A 226 4.60e+01 2a7yA 83 4.67e+01 1m9xC 146 4.72e+01 a.73.1.1 84907 1ts9A 102 4.75e+01 1p9bA 442 4.78e+01 c.37.1.10 94385 1qwyA 291 4.80e+01 b.84.3.2 96509 1sf8A 126 4.91e+01 d.271.1.1 105472 1ymiA 334 4.93e+01 1mk4A 157 4.94e+01 d.108.1.1 84979 2c60A 111 4.95e+01 1d4tA 104 5.00e+01 1d4tA d.93.1.1 40537 1ryiA 382 5.00e+01 2gpzA 111 5.01e+01 1j05B 121 5.13e+01 b.1.1.1 90736 1pmy 123 5.13e+01 1bqk b.6.1.1 22888 2a6vA 226 5.13e+01 1jhfA 202 5.14e+01 a.4.5.2,b.87.1.1 63057,63058 1x0tA 120 5.19e+01 1s12A 94 5.20e+01 1cs0A 1073 5.23e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1eu1A 780 5.24e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1oe1A 336 5.25e+01 b.6.1.3,b.6.1.3 86891,86892 1ygtA 111 5.31e+01 1qz8A 113 5.32e+01 b.140.1.1 96619 2f4nA 273 5.39e+01 1qx4A 274 5.43e+01 b.43.4.2,c.25.1.1 104624,104625 2gaeA 346 5.43e+01 2ar1A 172 5.44e+01 1xi7A 61 5.48e+01 1xtmA 175 5.48e+01 1zk7A 467 5.51e+01 1yvhA 329 5.51e+01 1kgcD 206 5.52e+01 b.1.1.1,b.1.1.2 77384,77385 1w0pA 781 5.54e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1s1hC 192 5.59e+01 i.1.1.1 105156 1t6cA 315 5.61e+01 c.55.1.8,c.55.1.8 106558,106559 1pzgA 331 5.66e+01 c.2.1.5,d.162.1.1 95425,95426 1pn2A 280 5.74e+01 d.38.1.4,d.38.1.4 94930,94931 1h9mA 145 5.77e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1gk9B 557 5.79e+01 1tvxA 75 5.80e+01 1tvxA d.9.1.1 37441 1yk4A 52 5.92e+01 1gkpA 458 5.95e+01 b.92.1.3,c.1.9.6 70231,70232 1g8aA 227 5.95e+01 c.66.1.3 90506 1vqoA 240 5.97e+01 1brfA 53 6.04e+01 1rb9 g.41.5.1 45236 1dyoA 160 6.06e+01 1dyoA b.18.1.7 23771 1kte 105 6.19e+01 1kte c.47.1.1 32771 1g38A 393 6.20e+01 2admA c.66.1.27 60235 2bwkA 121 6.25e+01 1g1kA 143 6.27e+01 1aohA b.2.2.2 22404 4ubpA 101 6.29e+01 1ubpA d.8.1.1 37352 1j48A 110 6.32e+01 b.1.7.1 84112 1earA 147 6.33e+01 b.107.1.1,d.58.38.1 64875,64876 1uldA 150 6.37e+01 b.29.1.3 99545 1t82A 155 6.42e+01 d.38.1.5 106639 1vzyA 291 6.63e+01 1igqA 62 6.63e+01 b.34.1.3 66130 2bw2A 140 6.71e+01 1ofdA 1520 6.75e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1e5dA 402 6.85e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1tu7A 208 6.85e+01 1fr3A 67 6.90e+01 1fr3A b.40.6.1 25436 1gg4A 452 6.94e+01 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1vj2A 126 6.97e+01 b.82.1.10 100796 1q8iA 783 7.03e+01 c.55.3.5,e.8.1.1 96208,96209 1gutA 68 7.05e+01 b.40.6.1 65576 1ut7A 171 7.10e+01 b.143.1.1 99906 2c2aA 258 7.13e+01 1vavA 222 7.14e+01 b.29.1.18 108472 1pne 140 7.15e+01 1pne d.110.1.1 40866 1sddA 306 7.29e+01 b.6.1.3,b.6.1.3 105431,105432 1oi6A 205 7.38e+01 b.82.1.1 103940 1h8dH 260 7.52e+01 5ptp 1914 232 7.59e+01 1914 d.49.1.1,d.49.1.1 83028,83029 2fvgA 340 7.69e+01 1qyaA 307 7.76e+01 d.21.1.2,d.21.1.2 104653,104654 1lkdA 297 7.79e+01 d.32.1.3,d.32.1.3 78059,78060 1ly2A 130 7.93e+01 g.18.1.1,g.18.1.1 74335,74336 1j3mA 129 8.06e+01 d.129.7.1 103836 1qj8A 148 8.07e+01 1qj8A f.4.1.1 43744 1rgzA 363 8.07e+01 e.3.1.1 97457 1x0oA 119 8.11e+01 1yz1A 174 8.11e+01 1btn 106 8.17e+01 1btn b.55.1.1 26952 1y7mA 164 8.17e+01 1c96A 753 8.21e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1e1hA 287 8.21e+01 d.92.1.7 83167 1z2nX 324 8.23e+01 1vjqA 79 8.29e+01 k.43.1.1 100830 1n4xH 120 8.31e+01 b.1.1.1 85324 1qqp3 220 8.38e+01 1qqp3 1xauA 122 8.38e+01 1c8cA 64 8.39e+01 1azpA b.34.13.1 59084 1cq3A 233 8.41e+01 1cq3A b.27.1.1 23923 1fjgL 135 8.43e+01 1fjfL b.40.4.5 25346 1txkA 498 8.56e+01 b.1.18.2,b.30.5.9 107425,107426 1zkpA 268 8.61e+01 1ejxA 100 8.64e+01 d.8.1.1 83182 1tedA 393 8.71e+01 c.95.1.2 106807 1gotB 340 8.73e+01 1tbgA b.69.4.1 27648 1nszA 347 8.78e+01 b.30.5.4 80724 1ve6A 582 8.88e+01 1zjcA 418 8.93e+01