# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oaqL 120 8.49e-02 b.1.1.1 92708 2fhxA 246 4.36e-01 1vkkA 154 4.61e-01 d.109.1.2 108669 1x8hA 228 5.40e-01 1oalA 151 5.47e-01 b.1.8.1 86739 1wh0A 134 7.03e-01 1m2xA 223 9.72e-01 d.157.1.1 84764 1jjtA 228 1.41e+00 1a7tA d.157.1.1 63139 1zuoA 186 2.02e+00 1osyA 115 2.47e+00 b.1.21.1 93502 1pz4A 116 2.74e+00 d.106.1.1 95400 1yhfA 115 3.31e+00 1unkA 87 3.40e+00 1cei a.28.2.1 16935 1ok0A 74 4.02e+00 b.5.1.1 93191 1x8gA 227 4.25e+00 1tu7A 208 4.29e+00 1jmtA 104 4.63e+00 d.58.7.3 63180 1x4rA 99 5.99e+00 2c78A 405 6.38e+00 1r29A 127 6.87e+00 d.42.1.1 96856 1j3mA 129 7.28e+00 d.129.7.1 103836 1rds 105 7.62e+00 9rnt d.1.1.4 36236 1zn8A 180 7.72e+00 1zmaA 118 7.73e+00 1gvp 87 7.92e+00 1gvp b.40.4.7 25369 1r7lA 110 8.00e+00 d.277.1.1 104837 1q2yA 140 8.79e+00 d.108.1.1 95655 1qcsA 211 9.00e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1j7xA 302 9.01e+00 c.14.1.2 66425 1qr0A 228 9.15e+00 1qr0A d.150.1.1,d.150.1.1 59038,59039 3tss 194 1.15e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1914 232 1.18e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1zv1A 65 1.27e+01 1fvuB 125 1.35e+01 1ixxB d.169.1.1 42346 1ukgA 252 1.35e+01 b.29.1.1 99489 1yhpA 212 1.36e+01 1kk1A 410 1.43e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1m2tB 263 1.48e+01 b.42.2.1,b.42.2.1 84762,84763 1owxA 121 1.52e+01 d.58.7.1 87494 2a6tA 271 1.65e+01 1buoA 121 1.77e+01 1buoA d.42.1.1 38631 1wruA 379 1.78e+01 1vqqA 646 1.86e+01 1jc4A 148 1.89e+01 1jc4A d.32.1.4 62863 1rsgA 516 1.93e+01 1uldA 150 1.97e+01 b.29.1.3 99545 1kgcD 206 2.02e+01 b.1.1.1,b.1.1.2 77384,77385 1kptA 105 2.04e+01 1kptA d.70.1.1 39588 2d7nA 93 2.09e+01 1v5rA 97 2.13e+01 1fqtA 112 2.15e+01 1fqtA b.33.1.1 24441 1ygtA 111 2.28e+01 1m8aA 70 2.31e+01 d.9.1.1 74579 2b95A 106 2.32e+01 1r7mA 235 2.43e+01 1y7rA 133 2.46e+01 1x3qA 57 2.59e+01 1ufwA 95 2.64e+01 d.58.7.1 99358 2bjrA 368 2.77e+01 1tqzA 133 2.82e+01 2aamA 309 2.82e+01 2c60A 111 2.83e+01 1txkA 498 2.93e+01 b.1.18.2,b.30.5.9 107425,107426 1lo6A 223 2.97e+01 b.47.1.2 74143 1p1lA 102 3.08e+01 d.58.5.2 87695 1q1oA 98 3.29e+01 d.15.2.2 95596 2fuqA 747 3.30e+01 1o4tA 133 3.32e+01 b.82.1.9 86622 1wlfA 179 3.33e+01 b.52.2.3,d.31.1.1 109396,109397 1qz8A 113 3.38e+01 b.140.1.1 96619 1gxuA 91 3.44e+01 d.58.10.1 76378 1weyA 104 3.49e+01 2fs2A 151 3.73e+01 1z8gA 372 3.77e+01 2bz6H 254 3.92e+01 1zx8A 136 3.95e+01 1k7iA 479 3.95e+01 b.80.7.1,d.92.1.6 77281,77282 1vzqH 250 4.11e+01 1fltX 95 4.23e+01 1fltX b.1.1.4 21765 2dd8S 202 4.38e+01 1fjgL 135 4.44e+01 1fjfL b.40.4.5 25346 1i0vA 104 4.44e+01 9rnt d.1.1.4 36054 1va4A 279 4.48e+01 c.69.1.12 108458 1pi1A 185 4.65e+01 a.29.7.1 94699 2crvA 120 4.74e+01 1wdyA 285 4.75e+01 1m3uA 264 4.86e+01 c.1.12.8 84784 1vkcA 158 4.87e+01 1s4iA 175 5.04e+01 1ayaA 101 5.11e+01 1qadA d.93.1.1 40460 1mxgA 435 5.41e+01 b.71.1.1,c.1.8.1 85193,85194 1xtmA 175 5.53e+01 1ly2A 130 5.68e+01 g.18.1.1,g.18.1.1 74335,74336 1kte 105 5.74e+01 1kte c.47.1.1 32771 1vjqA 79 5.74e+01 k.43.1.1 100830 1pg6A 243 5.77e+01 b.82.5.2 94673 2aj0A 71 5.99e+01 2g45A 129 6.02e+01 1suwA 249 6.04e+01 e.52.1.1 106027 1yb3A 175 6.05e+01 1faoA 126 6.10e+01 1faoA b.55.1.1 26974 2a1fA 247 6.11e+01 1dlfL 113 6.32e+01 8fabA b.1.1.1 20382 1fnd 314 6.44e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2aw4P 114 6.47e+01 1uypA 432 6.53e+01 b.29.1.19,b.67.2.3 100176,100177 1jcfA 344 6.57e+01 c.55.1.1,c.55.1.1 62878,62879 1e9pA 151 6.67e+01 1mfmA b.1.8.1 22215 1m98A 317 6.82e+01 a.175.1.1,d.17.4.6 78866,78867 1c01A 76 6.89e+01 1c01A b.11.1.5 23633 1zkkA 167 6.91e+01 1xnkA 196 6.94e+01 3prn 289 6.96e+01 3prn f.4.3.1 43761 2al6A 375 7.04e+01 1n12A 138 7.07e+01 b.2.3.2 79779 1h8dH 260 7.10e+01 5ptp 1uv7A 110 7.18e+01 d.67.4.1 100040 1sf8A 126 7.22e+01 d.271.1.1 105472 1x0oA 119 7.25e+01 1z0sA 278 7.25e+01 2beiA 170 7.28e+01 2bjdA 101 7.32e+01 1ikpA 613 7.35e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1eo6A 117 7.42e+01 1eo6A d.15.1.3 37609 1rtu 114 7.42e+01 9rnt d.1.1.4 36139 2bwkA 121 7.53e+01 1nu4A 97 7.58e+01 d.58.7.1 80731 1wloA 136 7.65e+01 1vp6A 138 7.76e+01 2g8yA 385 7.97e+01 1vfvA 366 8.00e+01 c.37.1.9 108592 1bqk 124 8.00e+01 1bqk b.6.1.1 22889 1kdoA 227 8.01e+01 c.37.1.1 68478 1j05A 111 8.03e+01 b.1.1.1 90735 1vqsA 116 8.28e+01 1ybdA 239 8.28e+01 2ar1A 172 8.31e+01 1bxoA 323 8.33e+01 2er7E b.50.1.2 26805 2bbeA 108 8.37e+01 1zq9A 285 8.46e+01 2as0A 396 8.54e+01 1q0eA 152 8.56e+01 b.1.8.1 95504 1q92A 197 8.66e+01 c.108.1.8 96250 2aiqA 231 8.77e+01 1p4xA 250 8.88e+01 a.4.5.28,a.4.5.28 87784,87785