# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 2.37e-01 d.109.1.2 108395 1ok0A 74 9.63e-01 b.5.1.1 93191 1yhfA 115 1.77e+00 1wu2A 396 2.62e+00 1zv1A 65 3.90e+00 1dl7L 109 4.31e+00 1mfa b.1.1.1 20498 1zn8A 180 4.66e+00 2ff4A 388 6.52e+00 4xiaA 393 6.67e+00 4xis c.1.15.3 29439 1n8pA 393 6.77e+00 c.67.1.3 80304 1xlaA 394 6.78e+00 4xis c.1.15.3 29445 1ue9A 80 8.22e+00 b.34.2.1 99255 1zmaA 118 8.92e+00 1d2eA 397 9.95e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1vkkA 154 9.99e+00 d.109.1.2 108669 1xb2A 409 1.00e+01 1yuhA 211 1.03e+01 1mfa b.1.1.1,b.1.1.2 20098,21130 2ajfE 180 1.03e+01 1j3mA 129 1.07e+01 d.129.7.1 103836 1wfsA 151 1.12e+01 2dd8S 202 1.17e+01 1a6wL 109 1.20e+01 1mfa b.1.1.1 20252 1sm3L 215 1.20e+01 8fabA b.1.1.1,b.1.1.2 20368,21360 1a6vL 110 1.21e+01 1mfa b.1.1.1 20256 1pg7W 210 1.23e+01 b.1.1.1,b.1.1.2 94682,94683 1ocwL 120 1.24e+01 b.1.1.1 92780 1oayL 110 1.26e+01 b.1.1.1 92737 1a6uL 108 1.26e+01 1mfa b.1.1.1 20254 1gigL 210 1.28e+01 1mfa b.1.1.1,b.1.1.2 19910,21004 1oaqL 120 1.29e+01 b.1.1.1 92708 1ngqL 215 1.31e+01 1mfa b.1.1.1,b.1.1.2 20092,21124 2bjmL 110 1.51e+01 1oauL 110 1.53e+01 b.1.1.1 92721 1f4xL 210 1.71e+01 8fabA b.1.1.1,b.1.1.2 20450,21414 1f4yL 210 1.71e+01 8fabA b.1.1.1,b.1.1.2 20454,21418 1undA 37 1.71e+01 a.14.1.1 107966 1p9bA 442 1.75e+01 c.37.1.10 94385 1ao5A 237 1.88e+01 5ptp b.47.1.2 26334 1wuoA 228 1.89e+01 1p4bL 135 1.90e+01 b.1.1.1 94099 1nj9A 212 1.92e+01 b.1.1.1,b.1.1.2 91897,91898 1ddkA 220 1.94e+01 1a7tA d.157.1.1 42056 1wupA 228 1.94e+01 1jjeA 222 1.95e+01 1a7tA d.157.1.1 63117 1jjtA 228 1.96e+01 1a7tA d.157.1.1 63139 1g6hA 257 2.27e+01 1gajA c.37.1.12 60318 1qs0A 407 2.28e+01 1qs0A c.36.1.11 31829 2bp7A 410 2.31e+01 1wh0A 134 2.35e+01 1nc2A 215 2.39e+01 b.1.1.1,b.1.1.2 91781,91782 1g9xA 257 2.46e+01 c.37.1.12 76219 1tu7A 208 2.52e+01 2atvA 196 2.52e+01 1o4sA 389 2.53e+01 c.67.1.1 86620 1xlmA 394 2.72e+01 4xis c.1.15.3 29441 2fuqA 747 2.73e+01 2futA 748 2.73e+01 1x62A 79 3.02e+01 1e57A 188 3.19e+01 1auyA b.121.4.6 59259 1x8iA 227 3.26e+01 1x8hA 228 3.27e+01 1ohoA 131 3.28e+01 1va4A 279 3.30e+01 c.69.1.12 108458 1vdzA 588 3.39e+01 2b32A 131 3.40e+01 1vqf 87 3.43e+01 1gvp b.40.4.7 25372 1w6yA 131 3.56e+01 1cqsA 131 3.56e+01 d.17.4.3 83165 1ea2A 131 3.76e+01 d.17.4.3 64860 1oh0A 131 3.88e+01 d.17.4.3 87004 1jmtA 104 4.04e+01 d.58.7.3 63180 1etzA 215 4.14e+01 8fabA b.1.1.1,b.1.1.2 20480,21444 1plc 99 4.15e+01 1plc b.6.1.1 22846 2ahoA 414 4.20e+01 1lilA 212 4.24e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1w02A 131 4.30e+01 d.17.4.3 108981 1dmqA 131 4.41e+01 1opy d.17.4.3 38116 1w00A 131 4.44e+01 1vqj 87 4.50e+01 1gvp b.40.4.7 25374 1auyA 189 4.59e+01 1auyA b.121.4.6 23311 2bf1A 316 4.59e+01 1e8oA 85 4.85e+01 1914 d.49.1.1 38773 1yaiA 151 4.85e+01 1yaiA b.1.8.1 22289 1gajA 257 4.91e+01 1gajA c.37.1.12 60416 1c7hA 131 4.94e+01 1opy d.17.4.3 38117 1vzzA 131 5.05e+01 d.17.4.3 108977 2ccaA 740 5.16e+01 2ccdA 740 5.16e+01 1sj2A 743 5.18e+01 a.93.1.3,a.93.1.3 105597,105598 1vqi 87 5.24e+01 1gvp b.40.4.7 25373 1h6qA 168 5.25e+01 1h6qA b.88.1.2 60692 1pfiA 46 5.28e+01 1pfiA h.1.4.1 45558 1xi8A 403 5.28e+01 1kcaA 109 5.41e+01 b.87.1.1 68426 1m2xA 223 5.42e+01 d.157.1.1 84764 1oalA 151 5.59e+01 b.1.8.1 86739 1id0A 152 5.66e+01 d.122.1.3 66111 1xi7A 61 5.69e+01 1gkpA 458 5.76e+01 b.92.1.3,c.1.9.6 70231,70232 1yhb 87 5.82e+01 1gvp b.40.4.7 25383 1yb3A 175 5.82e+01 1f39A 101 5.85e+01 1umuA b.87.1.1 28386 2ctfA 102 5.93e+01 1c01A 76 6.03e+01 1c01A b.11.1.5 23633 1ae2 87 6.08e+01 1gvp b.40.4.7 25382 1hehC 88 6.17e+01 1xbd b.2.2.1 60972 1uzgA 392 6.26e+01 1vqd 87 6.53e+01 1gvp b.40.4.7 25375 1fvqA 72 6.53e+01 1aw0 d.58.17.1 60046 1n9sA 93 6.71e+01 b.38.1.1 80351 1xylA 386 6.72e+01 4xis c.1.15.3 29413 1y7rA 133 6.77e+01 1ttnA 106 6.84e+01 1gkh 87 6.87e+01 1gvp b.40.4.7 25371 1yhaA 87 6.87e+01 1gvp b.40.4.7 25384 1gvp 87 6.90e+01 1gvp b.40.4.7 25369 1ae3 86 6.95e+01 1gvp b.40.4.7 25381 1qdnA 204 7.01e+01 1qcsA b.52.2.3,d.31.1.1 26928,38462 1dxiA 388 7.12e+01 4xis c.1.15.3 29407 1ib5A 151 7.18e+01 1yaiA b.1.8.1 62145 1a3p 45 7.20e+01 1egf g.3.11.1 44284 1indL 215 7.20e+01 1mfa b.1.1.1,b.1.1.2 19838,20942 1nznA 126 7.24e+01 a.118.8.1 92382 1qqtA 551 7.26e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1qcsA 211 7.35e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1bzoA 151 7.36e+01 1yaiA b.1.8.1 22292 1oajA 151 7.42e+01 b.1.8.1 86738 1n9rA 93 7.43e+01 b.38.1.1 80344 1ojqA 212 7.44e+01 d.166.1.1 93146 1v91A 38 7.50e+01 2gyiA 386 7.50e+01 4xis c.1.15.3 29409 1ibbA 151 7.53e+01 1yaiA b.1.8.1 62156 1cqa 133 7.58e+01 3nul d.110.1.1 40890 1vi7A 217 7.80e+01 d.14.1.11,d.58.11.2 100740,100741 1914 232 7.81e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1h5yA 253 7.98e+01 c.1.2.1 65638 1vqa 87 8.31e+01 1gvp b.40.4.7 25377 1aogA 485 8.34e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1bzlA 486 8.35e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30521,30522,40192 1gxfA 492 8.45e+01 c.3.1.5,c.3.1.5,d.87.1.1 90527,90528,90529 1yioA 208 8.56e+01 1t8pA 267 8.89e+01 c.60.1.1 106667