# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2eA 397 8.45e-02 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1zn8A 180 3.11e-01 1z0sA 278 3.75e-01 1suwA 249 3.75e-01 e.52.1.1 106027 1oaqL 120 4.63e-01 b.1.1.1 92708 1hoe 74 4.90e-01 1hoe b.5.1.1 22833 1ok0A 74 4.90e-01 b.5.1.1 93191 1a6wL 109 5.93e-01 1mfa b.1.1.1 20252 1ifrA 121 8.49e-01 b.1.16.1 71203 1yhfA 115 1.03e+00 1ha3A 405 1.70e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1yhpA 212 1.81e+00 1ojqA 212 2.05e+00 d.166.1.1 93146 1psuA 140 2.31e+00 d.38.1.5 88285 2c78A 405 2.45e+00 1uebA 184 2.80e+00 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2fs2A 151 2.89e+00 1o4tA 133 2.97e+00 b.82.1.9 86622 2d7nA 93 3.78e+00 1mfa 247 5.13e+00 1mfa b.1.1.1,b.1.1.1 19888,19889 1vkyA 347 5.22e+00 e.53.1.1 108696 1fs0E 138 5.33e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 1m2xA 223 5.40e+00 d.157.1.1 84764 1nqeA 594 5.92e+00 f.4.3.3 86027 2d1eA 248 6.93e+00 1ah6 220 7.15e+00 1yer d.122.1.1 41094 2brcA 214 7.15e+00 1exmA 405 7.99e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1dkgA 197 9.10e+00 1dkgA b.73.1.1,h.1.9.1 27812,45626 1h54A 754 9.36e+00 a.102.1.4,b.30.5.3 60634,60635 1z47A 355 9.86e+00 1z6bA 154 1.06e+01 1qcsA 211 1.11e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1uwcA 261 1.12e+01 c.69.1.17 100101 2bjhA 260 1.12e+01 1onxA 390 1.19e+01 b.92.1.7,c.1.9.13 87176,87177 1pz4A 116 1.20e+01 d.106.1.1 95400 1zkiA 133 1.42e+01 1yqcA 170 1.43e+01 1y7rA 133 1.48e+01 1e8pA 46 1.50e+01 g.55.1.1 59385 1v6fA 151 1.52e+01 d.109.1.2 108395 1yb3A 175 1.54e+01 1oalA 151 1.63e+01 b.1.8.1 86739 2cw8A 537 1.65e+01 1ukgA 252 1.73e+01 b.29.1.1 99489 1n3oA 252 1.74e+01 b.29.1.1 79967 1q87A 221 1.80e+01 e.47.1.1 96192 1tbuA 118 1.81e+01 1vhzA 198 1.87e+01 d.113.1.1 100718 1bqk 124 1.87e+01 1bqk b.6.1.1 22889 1plc 99 1.91e+01 1plc b.6.1.1 22846 1dq3A 454 1.92e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1bbt3 220 1.92e+01 1qqp3 1qqp3 220 1.97e+01 1qqp3 1mspA 126 1.99e+01 1mspA b.1.11.2 22333 1fnc 314 2.07e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 2d4qA 257 2.09e+01 1m8aA 70 2.10e+01 d.9.1.1 74579 1xsqA 168 2.12e+01 1o9yA 84 2.16e+01 b.139.1.1 92692 2breA 219 2.19e+01 1njkA 156 2.24e+01 d.38.1.1 85818 2g50A 530 2.26e+01 1bx1A 314 2.28e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1o6uA 403 2.29e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1wwcA 118 2.34e+01 1wwcA b.1.1.4 21778 1osyA 115 2.34e+01 b.1.21.1 93502 1olmA 403 2.39e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1dyoA 160 2.41e+01 1dyoA b.18.1.7 23771 1kk1A 410 2.49e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1fnd 314 2.49e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2gaeA 346 2.55e+01 1b9mA 265 2.59e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1peeA 180 2.62e+01 b.60.1.1 104126 1mjc 69 2.70e+01 1mjc b.40.4.5 25319 1rsgA 516 2.87e+01 1e3aB 560 2.90e+01 1ajqB 1kapP 479 2.93e+01 1sat b.80.7.1,d.92.1.6 28012,40298 2bjfA 329 3.08e+01 1c01A 76 3.14e+01 1c01A b.11.1.5 23633 1rwrA 301 3.17e+01 b.80.1.11 97990 1yaiA 151 3.17e+01 1yaiA b.1.8.1 22289 1o97C 264 3.18e+01 c.26.2.3 81232 1euoA 180 3.19e+01 1np1A b.60.1.1 27163 2ajfE 180 3.20e+01 1cjaA 342 3.33e+01 1cjaA d.144.1.3 41708 1h9sA 140 3.38e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1hnjA 317 3.42e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1vckA 115 3.44e+01 1k7iA 479 3.45e+01 b.80.7.1,d.92.1.6 77281,77282 1kliH 254 3.45e+01 b.47.1.2 77435 1dv1A 449 3.69e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1erxA 184 3.73e+01 1np1A b.60.1.1 27164 1y8cA 246 3.76e+01 1wh0A 134 3.76e+01 1htp 131 3.77e+01 1htp b.84.1.1 28220 1hl9A 449 3.91e+01 b.71.1.3,c.1.8.11 90650,90651 1neu 124 4.02e+01 1neu b.1.1.1 19704 1quqB 121 4.12e+01 1quqB b.40.4.3 25305 1sjdA 368 4.13e+01 c.1.11.2,d.54.1.1 105632,105633 1umwA 237 4.15e+01 d.223.1.2,d.223.1.2 99631,99632 1de4C 640 4.24e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1a49A 530 4.27e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2bz6H 254 4.28e+01 1xo8A 151 4.41e+01 1zkkA 167 4.42e+01 1z8gA 372 4.44e+01 1wruA 379 4.52e+01 1zhxA 438 4.54e+01 1koiA 184 4.61e+01 b.60.1.1 68725 1bk0 331 4.73e+01 1bk0 b.82.2.1 28118 1kb0A 677 4.73e+01 a.3.1.6,b.70.1.1 68378,68379 1ji6A 589 4.83e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1pm1X 180 4.83e+01 b.60.1.1 104189 2ae0X 345 4.86e+01 1s5jA 847 4.91e+01 1pmy 123 5.05e+01 1bqk b.6.1.1 22888 1e79D 482 5.17e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2f57A 317 5.19e+01 2gimA 106 5.36e+01 1cqxA 403 5.36e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1xfcA 384 5.36e+01 1g38A 393 5.55e+01 2admA c.66.1.27 60235 2bc2A 227 5.56e+01 1a7tA d.157.1.1 42031 1x8mA 288 5.58e+01 b.82.1.13 109516 1t77A 414 5.60e+01 1tit 98 5.65e+01 1tit b.1.1.4 21716 1h8eD 482 5.65e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1qz8A 113 5.91e+01 b.140.1.1 96619 1jvsA 400 5.99e+01 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1yy5B 513 6.02e+01 2dd8S 202 6.04e+01 2g0qA 173 6.07e+01 1wbiA 129 6.13e+01 1y9qA 192 6.20e+01 1tltA 319 6.26e+01 c.2.1.3,d.81.1.5 107135,107136 2aynA 404 6.30e+01 1gk9B 557 6.41e+01 2evbA 74 6.48e+01 1v70A 105 6.50e+01 1onwA 390 6.51e+01 b.92.1.7,c.1.9.13 87172,87173 1sgpE 185 6.54e+01 1qq4A b.47.1.1 25816 1v5rA 97 6.56e+01 1gv9A 260 6.71e+01 b.29.1.13 70596 1ygtA 111 6.72e+01 2ck3D 482 6.86e+01 1tu7A 208 6.91e+01 1p57B 255 6.92e+01 b.47.1.2 94126 1earA 147 6.94e+01 b.107.1.1,d.58.38.1 64875,64876 1danH 254 7.04e+01 5ptp b.47.1.2 26292 1pzgA 331 7.09e+01 c.2.1.5,d.162.1.1 95425,95426 1uaiA 224 7.14e+01 b.29.1.18 107761 1ddmA 135 7.26e+01 2nmbA b.55.1.2 26993 1u3oA 82 7.27e+01 1eajA 126 7.34e+01 1f5wA b.1.1.1 59401 1xauA 122 7.37e+01 1mi1A 414 7.41e+01 a.169.1.1,b.55.1.6 79137,79138 1914 232 7.55e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1kbvA 327 7.60e+01 b.6.1.3,b.6.1.3 68395,68396 1jchA 551 7.60e+01 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1zvnA 99 7.66e+01 1fvuB 125 7.67e+01 1ixxB d.169.1.1 42346 1odmA 331 7.71e+01 b.82.2.1 86875 1khbA 625 7.80e+01 c.91.1.1,c.109.1.1 68606,68607 1i7pA 274 7.83e+01 b.43.4.2,c.25.1.1 66048,66049 1xypA 190 7.85e+01 1axkA b.29.1.11 24327 2fl4A 149 7.87e+01 2gpzA 111 7.90e+01 1qx4A 274 7.91e+01 b.43.4.2,c.25.1.1 104624,104625 2f4lA 297 7.96e+01 1j7xA 302 7.97e+01 c.14.1.2 66425 1mqoA 227 7.99e+01 d.157.1.1 103846 1gr3A 160 8.02e+01 b.22.1.1 65476 1viuA 203 8.04e+01 d.113.1.1 100771 1jzuA 157 8.06e+01 b.60.1.1 84271 1xx0A 127 8.15e+01 1xe1A 116 8.22e+01 b.43.3.1 109571 1fsgA 233 8.25e+01 1qk3A c.61.1.1 34029 1mjfA 281 8.33e+01 c.66.1.17 79198 1s98A 107 8.43e+01 b.124.1.1 105377 1yz1A 174 8.49e+01 1onjA 61 8.53e+01 g.7.1.1 93358 1vb0A 61 8.53e+01 1rerA 391 8.53e+01 b.1.18.4,f.10.1.1 97327,97328 2b95A 106 8.56e+01 2fhxA 246 8.61e+01 1hpcA 131 8.71e+01 1htp b.84.1.1 28221 1jjtA 228 8.78e+01 1a7tA d.157.1.1 63139 1jjeA 222 8.80e+01 1a7tA d.157.1.1 63117 1cs0A 1073 8.86e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519