# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2eA 397 2.57e-02 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1v6fA 151 3.04e-02 d.109.1.2 108395 2fhxA 246 2.86e-01 1exmA 405 3.06e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1m2xA 223 3.73e-01 d.157.1.1 84764 1x8hA 228 4.23e-01 1yhfA 115 5.02e-01 1wh0A 134 5.24e-01 1jjeA 222 5.96e-01 1a7tA d.157.1.1 63117 1ha3A 405 6.44e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1zn8A 180 6.89e-01 1jjtA 228 9.37e-01 1a7tA d.157.1.1 63139 2c78A 405 1.03e+00 1j3mA 129 1.28e+00 d.129.7.1 103836 1hoe 74 1.62e+00 1hoe b.5.1.1 22833 1p9bA 442 2.24e+00 c.37.1.10 94385 1a6wL 109 2.84e+00 1mfa b.1.1.1 20252 1ok0A 74 3.00e+00 b.5.1.1 93191 1xhbA 472 3.17e+00 1r7lA 110 3.31e+00 d.277.1.1 104837 1oaqL 120 3.46e+00 b.1.1.1 92708 1y7rA 133 3.46e+00 1tu7A 208 3.79e+00 1s0uA 408 4.28e+00 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1zmaA 118 4.71e+00 1914 232 4.89e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1ddmA 135 4.90e+00 2nmbA b.55.1.2 26993 1q2yA 140 5.17e+00 d.108.1.1 95655 1oalA 151 5.36e+00 b.1.8.1 86739 1kk1A 410 5.40e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1gvp 87 6.07e+00 1gvp b.40.4.7 25369 1ooeA 236 7.17e+00 c.2.1.2 87196 1vqb 87 7.18e+00 1gvp b.40.4.7 25370 1x8gA 227 7.22e+00 1jmtA 104 7.64e+00 d.58.7.3 63180 1n3oA 252 8.00e+00 b.29.1.1 79967 1ukgA 252 8.03e+00 b.29.1.1 99489 2fuqA 747 8.08e+00 1vkkA 154 8.38e+00 d.109.1.2 108669 1u3oA 82 8.74e+00 1yaiA 151 1.07e+01 1yaiA b.1.8.1 22289 1vkyA 347 1.09e+01 e.53.1.1 108696 1r29A 127 1.23e+01 d.42.1.1 96856 1qcsA 211 1.47e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1p57B 255 1.49e+01 b.47.1.2 94126 3tss 194 1.54e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1uldA 150 1.55e+01 b.29.1.3 99545 1tit 98 1.80e+01 1tit b.1.1.4 21716 1dyoA 160 1.84e+01 1dyoA b.18.1.7 23771 1plc 99 2.01e+01 1plc b.6.1.1 22846 1qs0A 407 2.03e+01 1qs0A c.36.1.11 31829 1z8gA 372 2.10e+01 1zuoA 186 2.13e+01 2crvA 120 2.15e+01 1r6vA 671 2.24e+01 1lo6A 223 2.28e+01 b.47.1.2 74143 1fvuB 125 2.33e+01 1ixxB d.169.1.1 42346 1v5rA 97 2.38e+01 1danH 254 2.38e+01 5ptp b.47.1.2 26292 1vqqA 646 2.55e+01 1aw7A 194 2.59e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1m3uA 264 2.64e+01 c.1.12.8 84784 2bjdA 101 2.65e+01 1gv9A 260 2.66e+01 b.29.1.13 70596 1kliH 254 2.71e+01 b.47.1.2 77435 2atvA 196 2.80e+01 1hnjA 317 2.85e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 2bz6H 254 2.93e+01 1dkuA 317 3.09e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2ajfE 180 3.16e+01 1j7xA 302 3.16e+01 c.14.1.2 66425 2dd8S 202 3.21e+01 1ml9A 302 3.25e+01 b.85.7.1 79282 1gadO 330 3.25e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1fecA 490 3.25e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2a6tA 271 3.40e+01 1ulrA 88 3.52e+01 1g2fC 90 3.73e+01 k.12.1.1 60222 1ve6A 582 3.76e+01 2bc2A 227 3.79e+01 1a7tA d.157.1.1 42031 1w30A 201 3.80e+01 1bjt 793 3.85e+01 1bjt e.11.1.1 43249 1aayA 90 4.10e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1v3eA 431 4.13e+01 b.68.1.1 100287 1vk3A 615 4.23e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1cr1A 296 4.41e+01 1cr1A c.37.1.11 32286 1ufwA 95 4.42e+01 d.58.7.1 99358 1shsA 147 4.45e+01 1shsA b.15.1.1 23675 1c7gA 456 4.51e+01 c.67.1.2 90415 1zr6A 503 4.51e+01 1rsgA 516 4.58e+01 1ikpA 613 4.63e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1vkcA 158 4.64e+01 1ew4A 106 4.72e+01 1ew4A d.82.2.1 40023 1mqoA 227 4.82e+01 d.157.1.1 103846 1osdA 72 4.88e+01 d.58.17.1 104022 1yxmA 303 4.90e+01 1k8kD 300 4.92e+01 d.198.2.1,d.198.2.1 68309,68310 1vfvA 366 4.93e+01 c.37.1.9 108592 1jyoA 130 5.00e+01 d.198.1.1 67483 1vi7A 217 5.07e+01 d.14.1.11,d.58.11.2 100740,100741 1mxgA 435 5.11e+01 b.71.1.1,c.1.8.1 85193,85194 1y0nA 78 5.17e+01 1y9qA 192 5.19e+01 1i6iA 366 5.22e+01 1bg2 c.37.1.9 61844 1yy5B 513 5.25e+01 1h8dH 260 5.31e+01 5ptp 1w2iA 91 5.40e+01 d.58.10.1 109127 1psuA 140 5.40e+01 d.38.1.5 88285 1pz4A 116 5.44e+01 d.106.1.1 95400 2bjrA 368 5.72e+01 1v70A 105 5.82e+01 1fltX 95 5.85e+01 1fltX b.1.1.4 21765 1vjqA 79 6.01e+01 k.43.1.1 100830 1kte 105 6.02e+01 1kte c.47.1.1 32771 2ar1A 172 6.19e+01 1pqnA 127 6.22e+01 c.47.1.8 95025 1kv8A 216 6.24e+01 c.1.2.3 73054 1vzqH 250 6.32e+01 1pvyA 227 6.34e+01 d.115.1.2 95195 1va4A 279 6.37e+01 c.69.1.12 108458 2aehA 369 6.41e+01 1gxuA 91 6.46e+01 d.58.10.1 76378 2b4rO 345 6.48e+01 1vjw 60 6.74e+01 1fxd d.58.1.4 38991 1c01A 76 6.75e+01 1c01A b.11.1.5 23633 2alaA 391 6.79e+01 2b95A 106 6.85e+01 1snnA 227 6.88e+01 d.115.1.2 105821 1xe7A 203 6.98e+01 2gqrA 237 6.99e+01 2cwsA 237 7.07e+01 1nxzA 246 7.22e+01 b.122.1.2,c.116.1.5 86391,86392 1xtmA 175 7.25e+01 1eajA 126 7.29e+01 1f5wA b.1.1.1 59401 3bamA 213 7.34e+01 1bam c.52.1.3 33288 1t0aA 159 7.46e+01 1zv1A 65 7.51e+01 1mdbA 539 7.57e+01 e.23.1.1 79008 2fs2A 151 7.61e+01 2d7nA 93 7.64e+01 1q6oA 216 7.72e+01 c.1.2.3 95986 1sj1A 66 7.74e+01 d.58.1.4 105595 1ayaA 101 7.77e+01 1qadA d.93.1.1 40460 1f39A 101 7.97e+01 1umuA b.87.1.1 28386 1weyA 104 8.01e+01 1r9fA 136 8.10e+01 d.255.1.1 97257 1ojqA 212 8.11e+01 d.166.1.1 93146 1wspA 84 8.24e+01 1ucyH 150 8.36e+01 1ucyH 3hhrB 203 8.60e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 1m98A 317 8.96e+01 a.175.1.1,d.17.4.6 78866,78867 1zaaC 87 8.96e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015