# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2eA 397 4.61e-02 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1oaqL 120 1.43e-01 b.1.1.1 92708 1a6wL 109 2.31e-01 1mfa b.1.1.1 20252 1yhfA 115 3.43e-01 1hoe 74 3.97e-01 1hoe b.5.1.1 22833 1ok0A 74 4.90e-01 b.5.1.1 93191 1zn8A 180 4.93e-01 1v6fA 151 1.66e+00 d.109.1.2 108395 1z6bA 154 2.95e+00 1yhpA 212 3.45e+00 1ojqA 212 3.80e+00 d.166.1.1 93146 1mfa 247 4.18e+00 1mfa b.1.1.1,b.1.1.1 19888,19889 1ifrA 121 4.26e+00 b.1.16.1 71203 1m2xA 223 4.28e+00 d.157.1.1 84764 2d7nA 93 4.33e+00 1psuA 140 5.40e+00 d.38.1.5 88285 1nqeA 594 5.74e+00 f.4.3.3 86027 1oalA 151 5.86e+00 b.1.8.1 86739 1ha3A 405 5.88e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 2fs2A 151 6.22e+00 1vhzA 198 6.79e+00 d.113.1.1 100718 1914 232 7.16e+00 1914 d.49.1.1,d.49.1.1 83028,83029 1o4tA 133 7.20e+00 b.82.1.9 86622 1z0sA 278 7.53e+00 1suwA 249 7.56e+00 e.52.1.1 106027 1h54A 754 7.88e+00 a.102.1.4,b.30.5.3 60634,60635 2c78A 405 8.39e+00 1vkyA 347 8.44e+00 e.53.1.1 108696 1wh0A 134 8.68e+00 2bwrA 401 9.38e+00 1fs0E 138 9.46e+00 1aqt a.2.10.1,b.93.1.1 59997,59998 1p9bA 442 9.51e+00 c.37.1.10 94385 1h8eD 482 1.05e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1dq3A 454 1.10e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1x8hA 228 1.12e+01 2fhxA 246 1.13e+01 1y7rA 133 1.16e+01 1ukgA 252 1.17e+01 b.29.1.1 99489 1yaiA 151 1.22e+01 1yaiA b.1.8.1 22289 1de4C 640 1.33e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 1e79D 482 1.34e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 2ck3D 482 1.37e+01 1dkgA 197 1.45e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1uwcA 261 1.54e+01 c.69.1.17 100101 2bjhA 260 1.58e+01 1zkiA 133 1.58e+01 1osyA 115 1.61e+01 b.1.21.1 93502 1e8pA 46 1.64e+01 g.55.1.1 59385 2gpzA 111 1.74e+01 1wruA 379 1.83e+01 2brcA 214 1.96e+01 2breA 219 1.96e+01 1exmA 405 2.01e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1uebA 184 2.03e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2cw8A 537 2.06e+01 1plc 99 2.08e+01 1plc b.6.1.1 22846 1n3oA 252 2.24e+01 b.29.1.1 79967 1v5rA 97 2.25e+01 1tlyA 278 2.28e+01 f.4.6.1 107143 1tu7A 208 2.30e+01 1tit 98 2.44e+01 1tit b.1.1.4 21716 1eajA 126 2.45e+01 1f5wA b.1.1.1 59401 1bb9 115 2.50e+01 1bb9 b.34.2.1 24554 1e3aB 560 2.53e+01 1ajqB 1ah6 220 2.56e+01 1yer d.122.1.1 41094 1gk9B 557 2.60e+01 1ztxE 108 2.60e+01 2d4qA 257 2.64e+01 1o9yA 84 2.66e+01 b.139.1.1 92692 1bx1A 314 2.70e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnc 314 2.74e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1fnd 314 2.74e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1zkkA 167 2.75e+01 1njkA 156 2.77e+01 d.38.1.1 85818 1m8aA 70 2.78e+01 d.9.1.1 74579 1pz4A 116 2.80e+01 d.106.1.1 95400 1qznA 173 2.83e+01 b.2.2.2 104669 1dyoA 160 2.85e+01 1dyoA b.18.1.7 23771 1qcsA 211 2.86e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1a49A 530 2.87e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1jjeA 222 2.95e+01 1a7tA d.157.1.1 63117 1zldA 120 2.99e+01 1yy5B 513 3.09e+01 2d1eA 248 3.10e+01 2evbA 74 3.10e+01 2cmd 312 3.20e+01 2cmd c.2.1.5,d.162.1.1 30135,42102 1wbiA 129 3.29e+01 1nqzA 194 3.34e+01 d.113.1.1 86077 1tltA 319 3.40e+01 c.2.1.3,d.81.1.5 107135,107136 1kk1A 410 3.45e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1u3oA 82 3.67e+01 1mjc 69 3.77e+01 1mjc b.40.4.5 25319 1kbvA 327 3.79e+01 b.6.1.3,b.6.1.3 68395,68396 1y9qA 192 4.01e+01 1tbuA 118 4.05e+01 1fvuB 125 4.06e+01 1ixxB d.169.1.1 42346 1q87A 221 4.06e+01 e.47.1.1 96192 1pzgA 331 4.21e+01 c.2.1.5,d.162.1.1 95425,95426 1upqA 123 4.35e+01 2bgoA 140 4.35e+01 1uaiA 224 4.39e+01 b.29.1.18 107761 1cv8 174 4.39e+01 1cv8 d.3.1.1 37089 2bjfA 329 4.46e+01 1qz8A 113 4.53e+01 b.140.1.1 96619 1vkkA 154 4.56e+01 d.109.1.2 108669 1zm0A 114 4.60e+01 1c01A 76 4.77e+01 1c01A b.11.1.5 23633 1nekA 588 4.80e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1xx0A 127 4.80e+01 1lu4A 136 4.82e+01 c.47.1.10 91124 1dtoA 221 4.98e+01 1dtoA b.91.1.1 28405 1xe1A 116 5.10e+01 b.43.3.1 109571 1go7P 462 5.12e+01 b.80.7.1,d.92.1.6 76245,76246 1k7iA 479 5.13e+01 b.80.7.1,d.92.1.6 77281,77282 1kb0A 677 5.17e+01 a.3.1.6,b.70.1.1 68378,68379 1hnjA 317 5.22e+01 1hn9A c.95.1.2,c.95.1.2 35969,35970 1neu 124 5.24e+01 1neu b.1.1.1 19704 1mspA 126 5.24e+01 1mspA b.1.11.2 22333 1khbA 625 5.36e+01 c.91.1.1,c.109.1.1 68606,68607 2alaA 391 5.37e+01 1i88A 389 5.42e+01 c.95.1.2,c.95.1.2 66070,66071 1bbt3 220 5.45e+01 1qqp3 1qqp3 220 5.45e+01 1qqp3 1y8cA 246 5.62e+01 1sjdA 368 5.70e+01 c.1.11.2,d.54.1.1 105632,105633 2crvA 120 5.75e+01 2aynA 404 5.76e+01 1mv3A 213 5.87e+01 b.34.2.1 91468 1htp 131 5.93e+01 1htp b.84.1.1 28220 1hpcA 131 5.93e+01 1htp b.84.1.1 28221 1h9oA 112 5.94e+01 1qadA d.93.1.1 60837 1rsgA 516 5.95e+01 1cqxA 403 6.06e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1v70A 105 6.11e+01 1j7xA 302 6.13e+01 c.14.1.2 66425 1pne 140 6.30e+01 1pne d.110.1.1 40866 1onxA 390 6.32e+01 b.92.1.7,c.1.9.13 87176,87177 1ygtA 111 6.46e+01 1avyA 74 6.62e+01 1avyB h.1.17.1 45656 1u5uA 374 6.74e+01 1kgcD 206 6.78e+01 b.1.1.1,b.1.1.2 77384,77385 1xo8A 151 6.93e+01 1w3fA 315 7.03e+01 1h6qA 168 7.06e+01 1h6qA b.88.1.2 60692 1fjgL 135 7.07e+01 1fjfL b.40.4.5 25346 1wspA 84 7.08e+01 1z8gA 372 7.29e+01 1j05A 111 7.34e+01 b.1.1.1 90735 2gaeA 346 7.46e+01 1i8aA 189 7.51e+01 1i82A b.1.9.2 61951 1zh5A 195 7.59e+01 1gkpA 458 7.69e+01 b.92.1.3,c.1.9.6 70231,70232 1rwrA 301 7.71e+01 b.80.1.11 97990 1jjtA 228 7.71e+01 1a7tA d.157.1.1 63139 1gv9A 260 7.71e+01 b.29.1.13 70596 1quqB 121 7.81e+01 1quqB b.40.4.3 25305 1e9pA 151 7.93e+01 1mfmA b.1.8.1 22215 1fsgA 233 8.01e+01 1qk3A c.61.1.1 34029 1earA 147 8.02e+01 b.107.1.1,d.58.38.1 64875,64876 1xr4A 509 8.11e+01 1yg9A 330 8.21e+01 1n12A 138 8.30e+01 b.2.3.2 79779 1ml8A 134 8.38e+01 d.227.1.2 85013 1aapA 58 8.38e+01 1bpi g.8.1.1 44543 1mqoA 227 8.53e+01 d.157.1.1 103846 2fl4A 149 8.56e+01 1i1jA 108 8.59e+01 1i1jA b.34.2.1 61531 1cd8 114 8.60e+01 1cd8 b.1.1.1 19714 1zhxA 438 8.72e+01