# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6fA 151 9.84e-03 d.109.1.2 108395 1d2eA 397 4.45e-02 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1oaqL 120 9.05e-02 b.1.1.1 92708 1a6wL 109 9.08e-02 1mfa b.1.1.1 20252 1yaiA 151 5.09e-01 1yaiA b.1.8.1 22289 2fhxA 246 5.53e-01 1oalA 151 6.17e-01 b.1.8.1 86739 1vkkA 154 6.19e-01 d.109.1.2 108669 1wh0A 134 6.79e-01 1x8hA 228 6.99e-01 1xhbA 472 7.19e-01 1m2xA 223 1.23e+00 d.157.1.1 84764 1jjeA 222 1.35e+00 1a7tA d.157.1.1 63117 1shsA 147 1.55e+00 1shsA b.15.1.1 23675 1jjtA 228 1.79e+00 1a7tA d.157.1.1 63139 1tit 98 2.57e+00 1tit b.1.1.4 21716 1u3oA 82 2.84e+00 1zuoA 186 2.89e+00 1hoe 74 3.05e+00 1hoe b.5.1.1 22833 1yhfA 115 3.53e+00 1pz4A 116 3.82e+00 d.106.1.1 95400 1osyA 115 4.54e+00 b.1.21.1 93502 1ok0A 74 4.64e+00 b.5.1.1 93191 1tu7A 208 4.90e+00 1jmtA 104 5.74e+00 d.58.7.3 63180 1x8gA 227 6.15e+00 1unkA 87 6.79e+00 1cei a.28.2.1 16935 2c78A 405 7.29e+00 1r7lA 110 8.17e+00 d.277.1.1 104837 1zn8A 180 9.32e+00 1gvp 87 9.54e+00 1gvp b.40.4.7 25369 1exmA 405 9.58e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 1r29A 127 9.59e+00 d.42.1.1 96856 1x4rA 99 9.66e+00 1rds 105 9.68e+00 9rnt d.1.1.4 36236 1j3mA 129 9.99e+00 d.129.7.1 103836 1zmaA 118 1.05e+01 1j7xA 302 1.06e+01 c.14.1.2 66425 1q2yA 140 1.14e+01 d.108.1.1 95655 1qcsA 211 1.14e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1ha3A 405 1.17e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1vqb 87 1.19e+01 1gvp b.40.4.7 25370 1p57B 255 1.23e+01 b.47.1.2 94126 1qr0A 228 1.23e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 1aw7A 194 1.27e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1914 232 1.32e+01 1914 d.49.1.1,d.49.1.1 83028,83029 3tss 194 1.35e+01 1aw7A b.40.2.2,d.15.6.1 25160,37749 1kk1A 410 1.63e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1zv1A 65 1.64e+01 1cei 94 1.64e+01 1cei a.28.2.1 16939 1fvuB 125 1.73e+01 1ixxB d.169.1.1 42346 1n3oA 252 1.76e+01 b.29.1.1 79967 1ukgA 252 1.78e+01 b.29.1.1 99489 1owxA 121 1.84e+01 d.58.7.1 87494 1yhpA 212 1.86e+01 1m2tB 263 1.93e+01 b.42.2.1,b.42.2.1 84762,84763 2d7nA 93 1.95e+01 1wruA 379 2.01e+01 1uldA 150 2.07e+01 b.29.1.3 99545 1ygtA 111 2.18e+01 1vqqA 646 2.22e+01 1kgcD 206 2.22e+01 b.1.1.1,b.1.1.2 77384,77385 2a6tA 271 2.37e+01 1y7rA 133 2.40e+01 1buoA 121 2.42e+01 1buoA d.42.1.1 38631 1jc4A 148 2.42e+01 1jc4A d.32.1.4 62863 1kptA 105 2.46e+01 1kptA d.70.1.1 39588 1rsgA 516 2.49e+01 1pqnA 127 2.65e+01 c.47.1.8 95025 1yy5B 513 2.66e+01 2ajfE 180 2.68e+01 1r7mA 235 2.74e+01 2b95A 106 2.76e+01 1fqtA 112 2.81e+01 1fqtA b.33.1.1 24441 1m8aA 70 3.11e+01 d.9.1.1 74579 1v5rA 97 3.16e+01 1ufwA 95 3.17e+01 d.58.7.1 99358 1x3qA 57 3.26e+01 1qz8A 113 3.33e+01 b.140.1.1 96619 1p1lA 102 3.42e+01 d.58.5.2 87695 2aamA 309 3.42e+01 1o4tA 133 3.57e+01 b.82.1.9 86622 1tqzA 133 3.62e+01 2bjrA 368 3.65e+01 1fltX 95 3.69e+01 1fltX b.1.1.4 21765 1weyA 104 3.70e+01 1lo6A 223 3.79e+01 b.47.1.2 74143 2fuqA 747 4.01e+01 1s6dA 103 4.12e+01 a.52.1.3 105307 1txkA 498 4.13e+01 b.1.18.2,b.30.5.9 107425,107426 2c60A 111 4.20e+01 1q1oA 98 4.34e+01 d.15.2.2 95596 1zx8A 136 4.39e+01 1rerA 391 4.44e+01 b.1.18.4,f.10.1.1 97327,97328 1ztxE 108 4.53e+01 1wlfA 179 4.65e+01 b.52.2.3,d.31.1.1 109396,109397 2bc2A 227 4.76e+01 1a7tA d.157.1.1 42031 1w30A 201 4.85e+01 2fs2A 151 4.94e+01 2bz6H 254 4.95e+01 1kliH 254 5.09e+01 b.47.1.2 77435 1fjgL 135 5.13e+01 1fjfL b.40.4.5 25346 2dd8S 202 5.20e+01 1vzqH 250 5.29e+01 1k7iA 479 5.41e+01 b.80.7.1,d.92.1.6 77281,77282 1z8gA 372 5.45e+01 1sz6B 263 5.45e+01 1yioA 208 5.47e+01 1vkcA 158 5.51e+01 1vjqA 79 5.58e+01 k.43.1.1 100830 1pi1A 185 5.59e+01 a.29.7.1 94699 1danH 254 5.60e+01 5ptp b.47.1.2 26292 1va4A 279 5.76e+01 c.69.1.12 108458 1i0vA 104 5.84e+01 9rnt d.1.1.4 36054 1gxuA 91 5.94e+01 d.58.10.1 76378 1m3uA 264 6.05e+01 c.1.12.8 84784 1h1aA 191 6.15e+01 b.29.1.11 83450 1ayaA 101 6.28e+01 1qadA d.93.1.1 40460 1go7P 462 6.59e+01 b.80.7.1,d.92.1.6 76245,76246 1kte 105 6.59e+01 1kte c.47.1.1 32771 1lfo 128 6.80e+01 1hmt b.60.1.2 27223 1r4yA 136 6.81e+01 d.1.1.3 97056 2crvA 120 6.86e+01 1bymA 97 6.98e+01 1bi0 b.34.1.2 24458 1wdyA 285 7.04e+01 2bjdA 101 7.15e+01 1peqA 714 7.29e+01 a.98.1.1,c.7.1.2 104131,104132 1xtlA 175 7.45e+01 1rtu 114 7.52e+01 9rnt d.1.1.4 36139 1faoA 126 7.53e+01 1faoA b.55.1.1 26974 2a1fA 247 7.60e+01 2bvaA 292 7.63e+01 1mxgA 435 7.64e+01 b.71.1.1,c.1.8.1 85193,85194 1wloA 136 7.76e+01 1s4iA 175 7.78e+01 1pg6A 243 7.92e+01 b.82.5.2 94673 3prn 289 8.08e+01 3prn f.4.3.1 43761 1jcfA 344 8.11e+01 c.55.1.1,c.55.1.1 62878,62879 2g45A 129 8.14e+01 2aj0A 71 8.22e+01 1suwA 249 8.30e+01 e.52.1.1 106027 1m98A 317 8.36e+01 a.175.1.1,d.17.4.6 78866,78867 1xtmA 175 8.45e+01 1fnc 314 8.48e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1c01A 76 8.50e+01 1c01A b.11.1.5 23633 1vi7A 217 8.51e+01 d.14.1.11,d.58.11.2 100740,100741 1fnd 314 8.52e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2beiA 170 8.53e+01 1psuA 140 8.55e+01 d.38.1.5 88285 1xnkA 196 8.63e+01 1sf8A 126 8.76e+01 d.271.1.1 105472 2al6A 375 8.81e+01 1wr1B 58 8.92e+01 2fxqA 264 8.98e+01