Best Alignments for T0316

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xngA/T0316-1xngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xngA/T0316-1xngA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7562e-021.32e-03
1d2eA/T0316-1d2eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1d2eA/T0316-1d2eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8450e-016.36e-15 1efcA b.43.3.1
b.44.1.1
c.37.1.8
1gpmA/T0316-1gpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gpmA/T0316-1gpmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7106e+001.20e+00 1gpmA c.23.16.1
c.26.2.1
d.52.2.1
1dq3A/T0316-1dq3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dq3A/T0316-1dq3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4743e+001.02e-05 1dq3A b.86.1.2
d.50.3.1
d.95.2.2
d.95.2.2
2c78A/T0316-2c78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c78A/T0316-2c78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9961e+005.62e-16
1vl2A/T0316-1vl2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vl2A/T0316-1vl2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1455e+005.60e-05 c.26.2.1
d.210.1.1
2cokA/T0316-2cokA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cokA/T0316-2cokA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.4777e+002.23e-07
1theB/T0316-1theB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1theB/T0316-1theB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4574e+004.58e-07 1theB d.3.1.1
1id3B/T0316-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1id3B/T0316-1id3B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0529e+012.08e-06 a.22.1.1
1yhfA/T0316-1yhfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yhfA/T0316-1yhfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3018e+016.08e-04

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001