# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a2pA 129 7.86e-01 1csbB 205 1.87e+00 1theB 1xngA 268 2.35e+00 1d2eA 397 2.53e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1x8hA 228 4.06e+00 1p5hA 428 4.19e+00 c.123.1.1 87802 1po5A 476 4.51e+00 a.104.1.1 94963 1pmzA 86 4.63e+00 a.39.1.10 104195 1v52A 133 4.68e+00 1jjtA 228 4.94e+00 1a7tA d.157.1.1 63139 1iq4A 179 5.10e+00 1iq4A d.77.1.1 62641 1g47A 77 5.91e+00 1g47A g.39.1.3,g.39.1.3 45147,45148 1wh0A 134 6.16e+00 1jjeA 222 7.02e+00 1a7tA d.157.1.1 63117 1dq3A 454 7.11e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1dd6A 228 7.45e+00 1a7tA d.157.1.1 42054 1m2xA 223 7.59e+00 d.157.1.1 84764 1theA 260 8.00e+00 1theB d.3.1.1 37056 1theB 260 8.52e+00 1theB d.3.1.1 37057 2fhxA 246 8.96e+00 2cokA 113 9.05e+00 1eal 127 1.16e+01 1hmt b.60.1.2 27227 1cjsA 219 1.25e+01 1cjsA e.24.1.1 43354 1i2aA 219 1.25e+01 e.24.1.1 90660 1fkd 107 1.26e+01 1fkj d.26.1.1 38383 1tif 78 1.39e+01 1tif d.15.8.1 37836 1fkj 107 1.42e+01 1fkj d.26.1.1 38384 2sas 185 1.43e+01 2sas a.39.1.5 17258 1g5cA 170 1.44e+01 1g5cA c.53.2.1 60264 1fkf 107 1.50e+01 1fkj d.26.1.1 38386 1mszA 86 1.50e+01 d.68.7.1 79428 1ml9A 302 1.51e+01 b.85.7.1 79282 3ait 74 1.55e+01 1hoe b.5.1.1 22835 1hoe 74 1.56e+01 1hoe b.5.1.1 22833 1zljA 78 1.57e+01 2ait 74 1.59e+01 1hoe b.5.1.1 22837 2djkA 133 1.59e+01 1efcA 393 1.63e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1wdcB 156 1.66e+01 1wdcB a.39.1.5 17302 1bkf 107 1.74e+01 1fkj d.26.1.1 38382 1kk8B 139 1.76e+01 a.39.1.5 77430 1rcd 173 1.83e+01 2fha a.25.1.1 16687 1s6cA 183 1.87e+01 a.39.1.5 98594 1ffk1 177 1.89e+01 1ffk1 1ok0A 74 1.93e+01 b.5.1.1 93191 1at3A 247 2.00e+01 1at3A b.57.1.1 27021 1k3iA 656 2.03e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1d06A 130 2.07e+01 1drmA d.110.3.2 40906 1scmB 145 2.10e+01 1wdcB a.39.1.5 17304 1goh 639 2.10e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21809,23711,27633 1zo0A 126 2.29e+01 1s6lA 212 2.34e+01 1x8gA 227 2.43e+01 1go3E 187 2.51e+01 b.40.4.5,d.230.1.1 83054,83055 1gof 639 2.54e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1zuoA 186 2.70e+01 1wj7A 104 2.70e+01 1pswA 348 2.71e+01 c.87.1.7 88287 1a4pA 96 2.73e+01 1b4cA a.39.1.2 17176 1h2vZ 156 2.75e+01 d.58.7.1 76595 1xhbA 472 2.84e+01 1a6uL 108 2.88e+01 1mfa b.1.1.1 20254 1m4vA 204 2.91e+01 b.40.2.2,d.15.6.1 74459,74460 1eylA 186 2.92e+01 1wba b.42.4.1 25593 1ew0A 130 2.98e+01 1drmA d.110.3.2 40905 1mkeA 152 3.18e+01 b.55.1.4 79231 1m6yA 301 3.23e+01 a.60.13.1,c.66.1.23 78716,78717 1tk4A 121 3.25e+01 a.133.1.2 107073 1whzA 70 3.27e+01 1gmyA 261 3.30e+01 d.3.1.1 76236 1qndA 123 3.30e+01 1qndA d.106.1.1 40794 2d4qA 257 3.34e+01 2a7oA 112 3.40e+01 1tj9A 121 3.41e+01 a.133.1.2 107015 1kskA 234 3.44e+01 d.66.1.5,d.265.1.3 72920,90389 1k9uA 78 3.47e+01 a.39.1.10 84348 1ao5A 237 3.48e+01 5ptp b.47.1.2 26334 2g58A 121 3.49e+01 2g6fX 59 3.60e+01 1usuA 260 3.60e+01 d.14.1.8 99885 1zwpA 121 3.61e+01 1yyvA 131 3.63e+01 1fv0A 121 3.64e+01 a.133.1.2 70147 2bc2B 227 3.66e+01 1a7tA d.157.1.1 42032 1mioA 534 3.72e+01 1qguA c.92.2.3 35601 1h6kX 97 3.76e+01 d.58.7.1 60684 1kbaA 66 3.87e+01 3ebx g.7.1.1 44431 1lswA 131 3.89e+01 d.110.3.2 78181 1hgxA 183 3.91e+01 1tc1A c.61.1.1 34027 2a1vA 144 4.05e+01 1mfa 247 4.10e+01 1mfa b.1.1.1,b.1.1.1 19888,19889 1vhqA 232 4.13e+01 c.23.16.2 100696 1ydxA 406 4.14e+01 1mvwB 145 4.15e+01 i.15.1.1 79524 1oy1A 228 4.16e+01 c.23.16.2 87548 1nezG 128 4.22e+01 b.1.1.1 85592 1drmA 131 4.23e+01 1drmA d.110.3.2 40908 1kpmA 121 4.26e+01 a.133.1.2 72844 1rsy 152 4.36e+01 1rsy b.7.1.2 23192 1d2qA 173 4.38e+01 1d4vB b.22.1.1 23894 1a6vL 110 4.46e+01 1mfa b.1.1.1 20256 1ao7B 100 4.50e+01 1agdB b.1.1.2 20697 1ugnA 198 4.57e+01 b.1.1.4,b.1.1.4 107828,107829 1f3rB 257 4.59e+01 1f3rB b.1.1.1,b.1.1.1 20416,20417 1sqzA 121 4.62e+01 a.133.1.2 98975 2a7yA 83 4.63e+01 1asu 162 4.64e+01 1cxqA c.55.3.2 33626 1bmc 221 4.67e+01 1a7tA d.157.1.1 42038 1fdr 248 4.77e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1h6kZ 98 4.83e+01 d.58.7.1 60686 2ak5A 64 4.98e+01 2bc2A 227 5.20e+01 1a7tA d.157.1.1 42031 1nw3A 416 5.27e+01 c.66.1.31 86288 1a5v 162 5.28e+01 1cxqA c.55.3.2 33629 1fwp 139 5.28e+01 1eayC d.58.24.1 39396 1hlvA 131 5.29e+01 a.4.1.7,a.4.1.7 65854,65855 2f5gA 133 5.37e+01 1ly7A 121 5.43e+01 d.82.2.1 74339 1bynA 128 5.45e+01 1rsy b.7.1.2 23193 1vsd 152 5.53e+01 1cxqA c.55.3.2 33625 1rybA 212 5.63e+01 c.56.3.1 98098 1q1vA 70 5.69e+01 a.159.4.1 104479 1xj4A 119 5.69e+01 1a6wL 109 5.77e+01 1mfa b.1.1.1 20252 1qk3A 233 5.81e+01 1qk3A c.61.1.1 34031 1vddA 228 5.99e+01 e.49.1.1 108519 1kjs 74 6.03e+01 1kjs a.50.1.1 17792 1kn1A 160 6.05e+01 a.1.1.3 77455 2azqA 311 6.11e+01 1r7lA 110 6.16e+01 d.277.1.1 104837 1v6fA 151 6.31e+01 d.109.1.2 108395 2bl0C 142 6.47e+01 1ffkM 148 6.48e+01 1ffkM a.94.1.1 18740 1cxqA 162 6.53e+01 1cxqA c.55.3.2 33621 1ezvD 245 6.54e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 2gxfA 142 6.54e+01 1fnd 314 6.56e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1dapA 320 6.56e+01 1dapA c.2.1.3,d.81.1.3 30053,39968 1j83A 180 6.59e+01 b.18.1.12 66430 1zczA 464 6.65e+01 1bqhG 129 6.78e+01 1cd8 b.1.1.1 19715 1aokB 122 6.82e+01 1poa a.133.1.2 19561 1g6oA 330 7.06e+01 1g6oA c.37.1.11 32430 2fyxA 143 7.07e+01 1jpaA 312 7.10e+01 d.144.1.7 67011 1jj2O 148 7.20e+01 1ffkM a.94.1.1 63100 1zmaA 118 7.21e+01 1fnc 314 7.23e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1ruxA 951 7.44e+01 1dhx 1u55A 188 7.48e+01 d.278.1.1 107677 1z8gA 372 7.51e+01 1dxjA 242 7.53e+01 1cnsA d.2.1.1 36244 1p30A 952 7.56e+01 b.121.2.2,b.121.2.2 93964,93965 1s72P 149 7.57e+01 a.94.1.1 105335 1g0xA 197 7.59e+01 1nkr b.1.1.4,b.1.1.4 21805,21806 2cfuA 658 7.62e+01 1vqoP 149 7.79e+01 1b09A 206 7.83e+01 1sacA b.29.1.5 24247 1rwjA 82 7.84e+01 a.138.1.1 105114 3dapA 320 8.07e+01 1dapA c.2.1.3,d.81.1.3 30051,39966 1yovA 537 8.09e+01 1f06A 320 8.28e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 2eifA 136 8.34e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1b85A 351 8.35e+01 1arv a.93.1.1 18581 1fnb 314 8.37e+01 1fnc b.43.4.2,c.25.1.1 25628,31518 1snnA 227 8.44e+01 d.115.1.2 105821 1yhpA 212 8.48e+01 1b80A 351 8.60e+01 1arv a.93.1.1 18579 1ekgA 127 8.66e+01 1dlxA d.82.2.1 40021 1bx1A 314 8.66e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1txb 73 8.69e+01 1txb g.7.1.1 44455 1vqoE 178 8.71e+01 2bl0B 145 8.71e+01 1r1hA 696 8.81e+01 d.92.1.4 104756 1a2aA 122 8.82e+01 1poa a.133.1.2 19540 1js8A 394 8.85e+01 a.86.1.1,b.112.1.1 67219,67220 1wr2A 238 8.89e+01