# List of top-scoring protein chains for T0316.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 6.20e-01 1eal 127 1.48e+00 1hmt b.60.1.2 27227 1b7yB 785 1.71e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ok0A 74 3.65e+00 b.5.1.1 93191 1iq4A 179 8.89e+00 1iq4A d.77.1.1 62641 1t2xA 639 9.43e+00 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 1gof 639 9.50e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 9.54e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1o1uA 127 9.79e+00 b.60.1.2 81076 1v6fA 151 1.04e+01 d.109.1.2 108395 1awcB 153 1.20e+01 1bd8 d.211.1.1 19156 1po5A 476 1.24e+01 a.104.1.1 94963 2ff4A 388 1.24e+01 1suoA 476 1.37e+01 a.104.1.1 106026 1ux6A 350 1.51e+01 b.29.1.16,g.75.1.1 100145,100146 1xrtA 467 1.57e+01 1tv5A 443 1.64e+01 1hm7A 336 1.64e+01 a.128.1.4 76719 1pswA 348 1.77e+01 c.87.1.7 88287 1wh0A 134 1.84e+01 1pmzA 86 2.01e+01 a.39.1.10 104195 1d2eA 397 2.03e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xb2A 409 2.04e+01 1zn8A 180 2.06e+01 1n8pA 393 2.15e+01 c.67.1.3 80304 1dq3A 454 2.16e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1m4vA 204 2.22e+01 b.40.2.2,d.15.6.1 74459,74460 1w91A 503 2.31e+01 2bfgA 503 2.36e+01 2bs9A 503 2.37e+01 1lwuB 323 2.37e+01 d.171.1.1,h.1.8.1 74310,74311 1ps1A 337 2.57e+01 1ps1A a.128.1.4 19450 1lbvA 252 2.91e+01 e.7.1.1 73813 1yhfA 115 2.95e+01 1yc1A 264 2.99e+01 1bkf 107 3.03e+01 1fkj d.26.1.1 38382 1wlfA 179 3.04e+01 b.52.2.3,d.31.1.1 109396,109397 1hey 128 3.22e+01 3chy c.23.1.1 31061 1pg7W 210 3.23e+01 b.1.1.1,b.1.1.2 94682,94683 1zovA 386 3.28e+01 1fa0A 537 3.38e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1flgA 582 3.45e+01 4aahA b.70.1.1 27682 1dl7L 109 3.53e+01 1mfa b.1.1.1 20498 2mysA 843 3.60e+01 1lvk b.34.3.1,c.37.1.9 24557,32154 1mvwA 840 3.61e+01 i.15.1.1 79523 1l9cA 389 3.71e+01 c.3.1.2,d.16.1.3 77815,77816 1eymA 107 3.73e+01 1fkj d.26.1.1 38403 2a2pA 129 3.74e+01 1tcoC 107 3.80e+01 1fkj d.26.1.1 38426 1cc1L 498 3.83e+01 1h2rL e.18.1.1 43301 1el5A 389 3.83e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1fkj 107 3.84e+01 1fkj d.26.1.1 38384 6cgt 684 3.86e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 4xiaA 393 3.86e+01 4xis c.1.15.3 29439 1bl4A 107 3.93e+01 1fkj d.26.1.1 38393 2azqA 311 3.99e+01 1mkeA 152 4.04e+01 b.55.1.4 79231 5cgt 684 4.07e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 1tt5A 531 4.12e+01 c.111.1.2 107291 1cgt 684 4.21e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 8cgtA 684 4.22e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 4cgt 678 4.23e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 1n0wA 243 4.23e+01 c.37.1.11 79772 1xlaA 394 4.27e+01 4xis c.1.15.3 29445 1r4mA 529 4.36e+01 c.111.1.2 96999 1fkl 107 4.42e+01 1fkj d.26.1.1 38423 1yaaA 412 4.50e+01 1ajsA c.67.1.1 34280 2g8yA 385 4.58e+01 1s1iH 191 4.64e+01 i.1.1.1 105182 2dg4A 107 4.66e+01 1yovA 537 4.67e+01 1j83A 180 4.67e+01 b.18.1.12 66430 1yuhA 211 4.68e+01 1mfa b.1.1.1,b.1.1.2 20098,21130 1zv1A 65 4.87e+01 1f89A 291 4.88e+01 d.160.1.1 64988 2dg9A 107 5.25e+01 1rynA 202 5.28e+01 c.56.3.1 98107 1czfA 362 5.48e+01 1czfA b.80.1.3 28031 1mpp 361 5.48e+01 2rmpA b.50.1.2 26856 2ajfE 180 5.62e+01 1nezG 128 5.63e+01 b.1.1.1 85592 1bqhG 129 5.73e+01 1cd8 b.1.1.1 19715 2atpA 122 5.85e+01 1v06A 142 5.88e+01 1rymA 212 5.93e+01 c.56.3.1 98106 1rybA 212 6.01e+01 c.56.3.1 98098 1sm3L 215 6.03e+01 8fabA b.1.1.1,b.1.1.2 20368,21360 1lf1A 308 6.06e+01 c.1.8.3 73877 1ocwL 120 6.16e+01 b.1.1.1 92780 1zmaA 118 6.17e+01 1gpmA 525 6.29e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1fyvA 161 6.36e+01 1fyvA c.23.2.1 31127 1uv4A 293 6.38e+01 1ue9A 80 6.39e+01 b.34.2.1 99255 1gigL 210 6.45e+01 1mfa b.1.1.1,b.1.1.2 19910,21004 1ngqL 215 6.50e+01 1mfa b.1.1.1,b.1.1.2 20092,21124 1vhqA 232 6.55e+01 c.23.16.2 100696 1wznA 252 6.56e+01 1oaqL 120 6.59e+01 b.1.1.1 92708 2dd8S 202 6.73e+01 1z7dA 433 6.81e+01 1xjdA 345 6.86e+01 1oy1A 228 6.93e+01 c.23.16.2 87548 1rsy 152 6.98e+01 1rsy b.7.1.2 23192 1umdB 324 6.98e+01 c.36.1.7,c.48.1.2 99600,99601 1j3gA 187 7.02e+01 d.118.1.1 77075 1p8tA 285 7.08e+01 c.10.2.7 87982 1j3mA 129 7.19e+01 d.129.7.1 103836 1a6wL 109 7.37e+01 1mfa b.1.1.1 20252 1a6vL 110 7.44e+01 1mfa b.1.1.1 20256 1oznA 285 7.46e+01 c.10.2.7 87621 1oayL 110 7.74e+01 b.1.1.1 92737 1wu2A 396 7.74e+01 1gq8A 319 7.88e+01 b.80.1.5 70350 2b7aA 293 7.94e+01 1a6uL 108 8.17e+01 1mfa b.1.1.1 20254 1sp4B 205 8.18e+01 1mioA 533 8.20e+01 1qguA c.92.2.3 35601 2gqrA 237 8.26e+01 2dccA 256 8.43e+01 1ev13 239 8.47e+01 1aym3 2bjmL 110 8.59e+01 1auyA 189 8.70e+01 1auyA b.121.4.6 23311 1qdqA 253 8.70e+01 1theB d.3.1.1 37064 1oauL 110 8.71e+01 b.1.1.1 92721 2cp0A 95 8.99e+01 1sm2A 264 8.99e+01 d.144.1.7 105754