# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dq3A 454 9.11e-02 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xngA 268 2.15e-01 1nezG 128 4.69e-01 b.1.1.1 85592 1z0sA 278 1.08e+00 1suwA 249 1.15e+00 e.52.1.1 106027 1eylA 186 1.55e+00 1wba b.42.4.1 25593 1zvnA 99 2.09e+00 1wckA 220 2.57e+00 1yhfA 115 2.93e+00 1lkdA 297 3.02e+00 d.32.1.3,d.32.1.3 78059,78060 1zljA 78 4.00e+00 1zn8A 180 4.02e+00 1iloA 77 4.57e+00 c.47.1.1 66205 2a2pA 129 4.63e+00 1el5A 389 4.82e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1ifrA 121 5.26e+00 b.1.16.1 71203 1tlyA 278 5.42e+00 f.4.6.1 107143 1khoA 370 5.93e+00 a.124.1.1,b.12.1.3 72489,72490 1tzyD 103 6.33e+00 a.22.1.1 107533 1rzfL 213 6.40e+00 b.1.1.1,b.1.1.2 98152,98153 1r6vA 671 6.64e+00 1gg4A 452 6.75e+00 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2fvgA 340 6.81e+00 1gk9B 557 7.45e+00 1rsy 152 7.45e+00 1rsy b.7.1.2 23192 2fimA 276 7.67e+00 1ofdA 1520 7.80e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1dyoA 160 8.04e+00 1dyoA b.18.1.7 23771 1oaqL 120 8.13e+00 b.1.1.1 92708 1qmeA 702 8.82e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1kk1A 410 9.24e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2fs2A 151 9.34e+00 1f3lA 321 9.46e+00 1g6q2 c.66.1.6 59630 1gt1A 159 9.99e+00 b.60.1.1 90515 1ojqA 212 1.04e+01 d.166.1.1 93146 1cb8A 678 1.11e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1qwdA 177 1.14e+01 b.60.1.1 96471 1ca1 370 1.14e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1t9fA 187 1.15e+01 b.42.6.1 106710 1p5dX 463 1.16e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1lvwA 295 1.20e+01 c.68.1.6 84723 1kqpA 271 1.20e+01 c.26.2.1 72883 2bwrA 401 1.35e+01 1nlqA 108 1.36e+01 b.121.3.1 85853 1yfsA 465 1.38e+01 1g5cA 170 1.42e+01 1g5cA c.53.2.1 60264 1xe1A 116 1.42e+01 b.43.3.1 109571 2cokA 113 1.43e+01 1twfA 1733 1.46e+01 1pmzA 86 1.47e+01 a.39.1.10 104195 1io1A 398 1.61e+01 1io1A e.32.1.1 62611 1wkaA 147 1.68e+01 1b9mA 265 1.68e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1dg6A 191 1.76e+01 1d4vB b.22.1.1 23883 1jmcA 246 1.82e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1wdcC 156 1.85e+01 1wdcC a.39.1.5 17317 1pne 140 1.85e+01 1pne d.110.1.1 40866 1xzoA 174 1.96e+01 1yhpA 212 2.00e+01 1ok0A 74 2.03e+01 b.5.1.1 93191 1wdcB 156 2.15e+01 1wdcB a.39.1.5 17302 1wy5A 317 2.37e+01 1zxkA 98 2.43e+01 1hfuA 503 2.43e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1zkiA 133 2.45e+01 1tul 108 2.49e+01 1tul b.85.5.1 28373 1z6bA 154 2.58e+01 1qcsA 211 2.63e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 2bnmA 198 2.73e+01 1fl0A 171 2.78e+01 1eujA b.40.4.4 25315 1h09A 338 2.84e+01 b.109.1.1,c.1.8.8 83420,83421 1gpmA 525 2.84e+01 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1y8tA 324 2.86e+01 1m6yA 301 2.87e+01 a.60.13.1,c.66.1.23 78716,78717 2cyeA 133 3.00e+01 2djkA 133 3.12e+01 1xl3C 92 3.12e+01 1s6lA 212 3.13e+01 1nqeA 594 3.15e+01 f.4.3.3 86027 1avwB 171 3.24e+01 1wba b.42.4.1 25599 1lktA 104 3.26e+01 1lktA b.90.1.1 28398 1xypA 190 3.29e+01 1axkA b.29.1.11 24327 1m4rA 151 3.35e+01 a.26.1.3 84799 1o4tA 133 3.46e+01 b.82.1.9 86622 1w6sA 599 3.79e+01 2fcbA 173 3.94e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 1pguA 615 3.95e+01 b.69.4.1,b.69.4.1 88069,88070 2d7nA 93 3.97e+01 1xcbA 211 4.04e+01 a.4.5.38,c.2.1.12 109552,109553 1vrmA 325 4.11e+01 1w85I 49 4.17e+01 2bynA 227 4.27e+01 1ub3A 220 4.27e+01 c.1.10.1 88395 1nofA 383 4.29e+01 b.71.1.2,c.1.8.3 92020,92021 2a6vA 226 4.30e+01 2asuB 234 4.30e+01 1kk8B 139 4.39e+01 a.39.1.5 77430 1xrsA 516 4.53e+01 1k3iA 656 4.59e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2g0qA 173 4.64e+01 1y7yA 74 4.65e+01 1fs0E 138 4.71e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1y7mA 164 4.77e+01 1tbuA 118 4.81e+01 1cd9B 215 4.84e+01 1cto b.1.2.1,b.1.2.1 22041,22042 1hlvA 131 5.01e+01 a.4.1.7,a.4.1.7 65854,65855 1zkkA 167 5.03e+01 1sznA 417 5.17e+01 b.71.1.1,c.1.8.1 106162,106163 1fvuB 125 5.17e+01 1ixxB d.169.1.1 42346 1r8nA 185 5.26e+01 b.42.4.1 104851 1j83A 180 5.33e+01 b.18.1.12 66430 1ukgA 252 5.44e+01 b.29.1.1 99489 1oaqH 121 5.50e+01 b.1.1.1 92707 1o6sB 105 5.53e+01 b.1.6.1 81096 1qhdA 398 5.54e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1zczA 464 5.59e+01 1xnkA 196 5.65e+01 1y7rA 133 5.74e+01 1i8nA 126 5.76e+01 1i8nA g.10.1.2 61976 1o88A 353 5.78e+01 b.80.1.1 81178 1kapP 479 5.86e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1olmA 403 5.92e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2rhe 114 5.94e+01 8fabA b.1.1.1 20523 1m2xA 223 6.03e+01 d.157.1.1 84764 2ew2A 316 6.09e+01 1ybiA 288 6.09e+01 2eifA 136 6.13e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1pxfA 111 6.16e+01 b.40.4.4 88341 1olrA 224 6.22e+01 b.29.1.11 93330 1ux6A 350 6.31e+01 b.29.1.16,g.75.1.1 100145,100146 1ru4A 400 6.31e+01 b.80.1.9 97836 1sh0A 510 6.38e+01 e.8.1.4 98876 2brcA 214 6.57e+01 1ws0A 156 6.58e+01 1chmA 401 6.67e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1iq6A 134 6.75e+01 d.38.1.4 76755 1whzA 70 6.78e+01 1y9qA 192 6.86e+01 1wisA 124 6.88e+01 1eu1A 780 6.98e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1yb3A 175 7.07e+01 1wh0A 134 7.08e+01 1sacA 204 7.14e+01 1sacA b.29.1.5 24237 1qqp3 220 7.17e+01 1qqp3 1n4xH 120 7.32e+01 b.1.1.1 85324 2bcjB 340 7.34e+01 1jnyA 435 7.53e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1bxoA 323 7.56e+01 2er7E b.50.1.2 26805 1bcpB 199 7.60e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1jbeA 128 7.63e+01 3chy c.23.1.1 62845 1v3yA 192 7.74e+01 1v70A 105 7.76e+01 1wpnA 188 7.87e+01 1y89A 238 7.88e+01 2evbA 74 7.88e+01 2amlA 373 7.95e+01 1a9xB 379 7.98e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1uaiA 224 8.00e+01 b.29.1.18 107761 1rhfA 182 8.01e+01 b.1.1.1,b.1.1.4 97469,97470 1hf2A 210 8.05e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 2blnA 305 8.05e+01 1r26A 125 8.11e+01 c.47.1.1 96847 1zk5A 176 8.18e+01 2axoA 270 8.21e+01 1i8aA 189 8.26e+01 1i82A b.1.9.2 61951 1umhA 184 8.29e+01 b.18.1.21 99605 2d13A 227 8.33e+01 1yfqA 342 8.34e+01 1xsqA 168 8.35e+01 1e8pA 46 8.42e+01 g.55.1.1 59385 2gjgA 248 8.43e+01 1tjxA 159 8.44e+01 1ve6A 582 8.51e+01 2fytA 340 8.51e+01 2azwA 148 8.57e+01 1sur 215 8.64e+01 1sur c.26.2.2 31620 1wruA 379 8.66e+01 1kcvL 214 8.67e+01 b.1.1.1,b.1.1.2 72317,72318 2g76A 335 8.75e+01 1vddA 228 8.79e+01 e.49.1.1 108519 1wcgA 464 8.84e+01 1umzA 278 8.89e+01 b.29.1.2 99639 1xfcA 384 8.95e+01 1zpsA 138 8.98e+01