# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 7.18e-03 1b7yB 785 7.70e-02 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1zczA 464 8.82e-02 2a2pA 129 6.16e-01 1wh0A 134 7.44e-01 1el5A 389 8.02e-01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1tif 78 8.32e-01 1tif d.15.8.1 37836 1g5cA 170 9.88e-01 1g5cA c.53.2.1 60264 1iq4A 179 1.18e+00 1iq4A d.77.1.1 62641 1po5A 476 1.20e+00 a.104.1.1 94963 2cokA 113 1.43e+00 1k3iA 656 1.60e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1snnA 227 1.69e+00 d.115.1.2 105821 1dceB 331 1.75e+00 1dceB a.102.4.3 18872 1cxqA 162 1.90e+00 1cxqA c.55.3.2 33621 1x8hA 228 1.91e+00 1m2xA 223 2.05e+00 d.157.1.1 84764 1yhfA 115 2.06e+00 1i2aA 219 2.48e+00 e.24.1.1 90660 1pvdA 537 2.52e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31737,31777,31778 2f9lA 199 2.60e+00 2fhxA 246 2.61e+00 1q79A 514 2.83e+00 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1r7lA 110 2.93e+00 d.277.1.1 104837 1zn8A 180 2.97e+00 1gpmA 525 3.12e+00 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1lbvA 252 4.07e+00 e.7.1.1 73813 1dq3A 454 4.20e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1aop 497 4.27e+00 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1bkf 107 4.49e+00 1fkj d.26.1.1 38382 1zvnA 99 4.70e+00 1j8mF 297 4.79e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 2d13A 227 4.86e+00 1yovA 537 5.00e+00 1at3A 247 5.05e+00 1at3A b.57.1.1 27021 1hlvA 131 5.10e+00 a.4.1.7,a.4.1.7 65854,65855 1j3mA 129 5.50e+00 d.129.7.1 103836 1qmeA 702 5.63e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1wlfA 179 5.85e+00 b.52.2.3,d.31.1.1 109396,109397 1j83A 180 6.26e+00 b.18.1.12 66430 1b43A 340 6.41e+00 1a76 a.60.7.1,c.120.1.2 18092,33362 1gmyA 261 6.51e+00 d.3.1.1 76236 2c78A 405 7.08e+00 1fsgA 233 7.16e+00 1qk3A c.61.1.1 34029 1m6yA 301 7.16e+00 a.60.13.1,c.66.1.23 78716,78717 1sh0A 510 7.23e+00 e.8.1.4 98876 1jjtA 228 7.80e+00 1a7tA d.157.1.1 63139 1ok0A 74 7.94e+00 b.5.1.1 93191 1vlmA 219 7.97e+00 c.66.1.41 108836 1tzyD 103 8.28e+00 a.22.1.1 107533 1ps1A 337 8.36e+00 1ps1A a.128.1.4 19450 1wi6A 88 8.87e+00 1qxoA 388 9.12e+00 d.258.1.1 96539 1ewkA 490 9.24e+00 1ewkA c.93.1.1 35712 2aamA 309 9.29e+00 2g76A 335 9.60e+00 1uv4A 293 1.04e+01 1oaqL 120 1.08e+01 b.1.1.1 92708 1l6rA 227 1.13e+01 c.108.1.10 77768 1wdcC 156 1.15e+01 1wdcC a.39.1.5 17317 1z3eB 73 1.22e+01 2fyxA 143 1.28e+01 1m45A 148 1.29e+01 a.39.1.5 78598 1vckA 115 1.30e+01 1vkyA 347 1.34e+01 e.53.1.1 108696 1kk1A 410 1.38e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1h97A 147 1.42e+01 1h97A a.1.1.2 60812 2cxaA 256 1.51e+01 1gzsB 165 1.55e+01 a.168.1.1 76425 1qzzA 374 1.59e+01 a.4.5.29,c.66.1.12 96719,96720 1lgpA 116 1.63e+01 b.26.1.2 73890 1t0aA 159 1.74e+01 1wznA 252 1.74e+01 1ars 396 1.83e+01 1ajsA c.67.1.1 34287 1sg0A 230 2.02e+01 1rsy 152 2.03e+01 1rsy b.7.1.2 23192 1pzgA 331 2.04e+01 c.2.1.5,d.162.1.1 95425,95426 1y7rA 133 2.07e+01 2bl0B 145 2.08e+01 1q7hA 153 2.08e+01 b.122.1.1,d.17.6.2 96042,96043 1zxkA 98 2.13e+01 1zljA 78 2.13e+01 1rypI 222 2.14e+01 d.153.1.4 41877 1gvp 87 2.15e+01 1gvp b.40.4.7 25369 1jbeA 128 2.22e+01 3chy c.23.1.1 62845 1ykjA 394 2.31e+01 1zx1A 231 2.32e+01 2f2gA 221 2.34e+01 1q2yA 140 2.40e+01 d.108.1.1 95655 1odkA 235 2.41e+01 c.56.2.1 86863 1qsgA 265 2.43e+01 1eny c.2.1.2 29935 1h6kZ 98 2.43e+01 d.58.7.1 60686 1zmaA 118 2.45e+01 1x8gA 227 2.51e+01 1914 232 2.57e+01 1914 d.49.1.1,d.49.1.1 83028,83029 2pii 112 2.60e+01 2pii d.58.5.1 39071 1ut9A 609 2.60e+01 a.102.1.2,b.1.18.2 99912,99913 2bcmA 165 2.67e+01 1q1vA 70 2.69e+01 a.159.4.1 104479 1nw3A 416 2.80e+01 c.66.1.31 86288 1k0iA 394 2.89e+01 c.3.1.2,d.16.1.2 67942,67943 1vhqA 232 2.89e+01 c.23.16.2 100696 1xj4A 119 3.06e+01 1a76 326 3.11e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1fmtA 314 3.18e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1y96A 86 3.22e+01 1nezG 128 3.31e+01 b.1.1.1 85592 1cqqA 180 3.34e+01 1cqqA b.47.1.4 26422 1p9bA 442 3.39e+01 c.37.1.10 94385 2djkA 133 3.40e+01 1w9yA 319 3.45e+01 1v6tA 255 3.45e+01 1pxfA 111 3.46e+01 b.40.4.4 88341 2f5gA 133 3.55e+01 1wkvA 389 3.63e+01 1gv9A 260 3.63e+01 b.29.1.13 70596 1pmzA 86 3.68e+01 a.39.1.10 104195 1rhfA 182 3.75e+01 b.1.1.1,b.1.1.4 97469,97470 1qtnA 164 3.78e+01 1pauA c.17.1.1 30999 1wy5A 317 3.79e+01 1tu7A 208 3.83e+01 2a1vA 144 3.85e+01 2fp3A 316 3.85e+01 1kb9D 246 3.91e+01 a.3.1.3,f.23.11.1 77317,77318 1ew0A 130 3.94e+01 1drmA d.110.3.2 40905 1hjrA 158 4.18e+01 1hjrA c.55.3.6 33727 1zxfA 155 4.23e+01 1w85I 49 4.24e+01 1zrjA 50 4.27e+01 1dz3A 130 4.28e+01 1dz3A c.23.1.1 31105 1tocR 120 4.30e+01 1tocR g.8.1.2,g.8.1.2 44558,44559 1sacA 204 4.42e+01 1sacA b.29.1.5 24237 1a62 130 4.48e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1exrA 148 4.55e+01 1cll a.39.1.5 17299 2a7oA 112 4.56e+01 1c93A 265 4.64e+01 2ebn c.1.8.5 28998 2cbp 96 4.64e+01 2cbp b.6.1.1 22895 1a4pA 96 4.72e+01 1b4cA a.39.1.2 17176 1mp1A 111 4.75e+01 a.188.1.1 91382 1v5rA 97 4.99e+01 1nycA 111 5.00e+01 b.61.2.2 92336 1jalA 363 5.02e+01 c.37.1.8,d.15.10.2 84138,84139 2fgeA 995 5.07e+01 1r3sA 367 5.14e+01 c.1.22.1 96963 1l1eA 287 5.20e+01 c.66.1.18 73454 1wy7A 207 5.34e+01 1k4iA 233 5.35e+01 d.115.1.2 72056 1qwnA 1045 5.35e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2g6bA 180 5.42e+01 1tafB 70 5.52e+01 1tafB a.22.1.3 16482 1yhpA 212 5.59e+01 1ybiA 288 5.61e+01 1ek0A 170 5.61e+01 1ctqA c.37.1.8 32076 1uldA 150 5.71e+01 b.29.1.3 99545 1rtwA 220 5.74e+01 a.132.1.3 97823 1qwdA 177 5.79e+01 b.60.1.1 96471 1ydxA 406 5.89e+01 1k78A 149 5.92e+01 a.4.1.5,a.4.1.5 68255,68256 1h05A 146 5.99e+01 c.23.13.1 76433 1jmtA 104 6.02e+01 d.58.7.3 63180 1ta0A 197 6.06e+01 c.108.1.16 106729 1iw0A 215 6.09e+01 a.132.1.1 83720 1whzA 70 6.15e+01 1fnd 314 6.26e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1yz1A 174 6.31e+01 1xmxA 385 6.40e+01 1o6sB 105 6.55e+01 b.1.6.1 81096 1lba 146 6.62e+01 1lba d.118.1.1 41062 1j2gA 319 6.72e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1cfr 285 6.75e+01 1cfr c.52.1.7 33312 1v74B 87 6.76e+01 a.24.20.1 100443 2a14A 263 6.77e+01 1yxmA 303 6.78e+01 1o4wA 147 6.80e+01 c.120.1.1 86629 2bl0C 142 6.82e+01 1keaA 221 6.85e+01 a.96.1.2 68491 2gjgA 248 6.96e+01 1sqwA 188 6.97e+01 1dyoA 160 7.00e+01 1dyoA b.18.1.7 23771 1t5iA 172 7.01e+01 c.37.1.19 106450 1rxdA 159 7.01e+01 1oznA 285 7.02e+01 c.10.2.7 87621 1rylA 167 7.09e+01 d.276.1.1 105124 1wcwA 261 7.13e+01 1qo3C 137 7.13e+01 1qo3C d.169.1.1 42350 2crvA 120 7.17e+01 1zuoA 186 7.22e+01 1fdr 248 7.33e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1o75A 415 7.39e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1u96A 69 7.43e+01 1ukgA 252 7.44e+01 b.29.1.1 99489 2aotA 292 7.44e+01 1wr2A 238 7.47e+01 2aq8A 269 7.48e+01 1ikpA 613 7.50e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1no5A 114 7.50e+01 d.218.1.5 92014 1yb2A 275 7.55e+01 1x42A 232 7.63e+01 1y81A 138 7.69e+01 1vjgA 218 7.76e+01 c.23.10.6 100810 1lmmA 40 7.77e+01 g.3.6.2 91080 1wh5A 80 7.82e+01 1vr0A 247 7.92e+01 2fpoA 202 7.94e+01 1mdbA 539 7.94e+01 e.23.1.1 79008 1s1hC 192 8.04e+01 i.1.1.1 105156 1bx1A 314 8.18e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1htwA 158 8.25e+01 c.37.1.18 71083 1v7pB 128 8.34e+01 d.169.1.1 108407 2ffcA 353 8.35e+01 1k4zA 159 8.38e+01 b.80.5.1 72070 1no1A 126 8.41e+01 a.179.1.1 85913 1pne 140 8.43e+01 1pne d.110.1.1 40866 1vqqA 646 8.50e+01 1yukA 103 8.71e+01 1uz5A 402 8.87e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1z2lA 423 8.90e+01