# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 1.58e-01 1dq3A 454 3.07e-01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yhfA 115 1.47e+00 1lkdA 297 1.83e+00 d.32.1.3,d.32.1.3 78059,78060 1chmA 401 2.26e+00 1chmA c.55.2.1,d.127.1.1 33545,41142 1gg4A 452 2.44e+00 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1tlyA 278 2.48e+00 f.4.6.1 107143 1wh0A 134 2.51e+00 1wckA 220 3.32e+00 1pmzA 86 3.60e+00 a.39.1.10 104195 2bwrA 401 3.91e+00 1zvnA 99 4.51e+00 1dg6A 191 5.24e+00 1d4vB b.22.1.1 23883 1nezG 128 5.31e+00 b.1.1.1 85592 2fimA 276 5.39e+00 1iloA 77 5.60e+00 c.47.1.1 66205 1zn8A 180 6.21e+00 1zljA 78 6.76e+00 1oaqL 120 6.81e+00 b.1.1.1 92708 1umhA 184 7.75e+00 b.18.1.21 99605 1xcbA 211 8.18e+00 a.4.5.38,c.2.1.12 109552,109553 1el5A 389 8.65e+00 1b3mA c.3.1.2,d.16.1.3 30369,37937 1qmeA 702 8.90e+00 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1rsy 152 9.18e+00 1rsy b.7.1.2 23192 1kk1A 410 1.06e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1m6yA 301 1.09e+01 a.60.13.1,c.66.1.23 78716,78717 1gk9B 557 1.17e+01 1p5dX 463 1.21e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1lvwA 295 1.22e+01 c.68.1.6 84723 1eylA 186 1.30e+01 1wba b.42.4.1 25593 1iq4A 179 1.32e+01 1iq4A d.77.1.1 62641 1z6bA 154 1.52e+01 2cokA 113 1.52e+01 1sh0A 510 1.55e+01 e.8.1.4 98876 2axwA 134 1.64e+01 1hlvA 131 1.67e+01 a.4.1.7,a.4.1.7 65854,65855 2a2pA 129 1.67e+01 1nlqA 108 1.74e+01 b.121.3.1 85853 1nqeA 594 1.77e+01 f.4.3.3 86027 1h09A 338 1.81e+01 b.109.1.1,c.1.8.8 83420,83421 1o91A 178 1.82e+01 b.22.1.1 92656 1ok0A 74 1.87e+01 b.5.1.1 93191 2fvgA 340 1.89e+01 1zxkA 98 1.94e+01 2fs2A 151 2.09e+01 1ca1 370 2.10e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1j83A 180 2.25e+01 b.18.1.12 66430 1u24A 337 2.58e+01 1s6lA 212 2.59e+01 1gotB 340 2.61e+01 1tbgA b.69.4.1 27648 1yovA 537 2.71e+01 1khoA 370 2.74e+01 a.124.1.1,b.12.1.3 72489,72490 1ojqA 212 2.90e+01 d.166.1.1 93146 1pguA 615 2.93e+01 b.69.4.1,b.69.4.1 88069,88070 2f5tX 233 2.96e+01 1tif 78 3.05e+01 1tif d.15.8.1 37836 1fsgA 233 3.06e+01 1qk3A c.61.1.1 34029 1wbiA 129 3.09e+01 1avwB 171 3.21e+01 1wba b.42.4.1 25599 1zkkA 167 3.24e+01 1q79A 514 3.28e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1at3A 247 3.28e+01 1at3A b.57.1.1 27021 1zkiA 133 3.31e+01 1wdcB 156 3.44e+01 1wdcB a.39.1.5 17302 1gq8A 319 3.46e+01 b.80.1.5 70350 1exrA 148 3.50e+01 1cll a.39.1.5 17299 1xnkA 196 3.63e+01 2axoA 270 3.66e+01 1yq2A 1024 3.82e+01 1o6sB 105 3.83e+01 b.1.6.1 81096 2d13A 227 3.83e+01 1pne 140 3.92e+01 1pne d.110.1.1 40866 1suwA 249 4.02e+01 e.52.1.1 106027 2amlA 373 4.02e+01 1yhpA 212 4.04e+01 1zczA 464 4.04e+01 1wdcC 156 4.09e+01 1wdcC a.39.1.5 17317 1dm5A 315 4.11e+01 1avc a.65.1.1 18186 1xe1A 116 4.13e+01 b.43.3.1 109571 1zk5A 176 4.15e+01 2bl0C 142 4.24e+01 1r6vA 671 4.35e+01 1wruA 379 4.44e+01 2ch4A 320 4.53e+01 1j8mF 297 4.74e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2f3yA 148 4.77e+01 1kk8B 139 4.82e+01 a.39.1.5 77430 1ws0A 156 4.86e+01 1xovA 326 4.86e+01 2ew2A 316 4.89e+01 1xrsA 516 4.94e+01 1xhdA 173 4.98e+01 1czfA 362 5.04e+01 1czfA b.80.1.3 28031 1gt1A 159 5.09e+01 b.60.1.1 90515 1hgxA 183 5.12e+01 1tc1A c.61.1.1 34027 1z0sA 278 5.14e+01 1mpp 361 5.15e+01 2rmpA b.50.1.2 26856 2bcjB 340 5.17e+01 1gmyA 261 5.27e+01 d.3.1.1 76236 1io1A 398 5.30e+01 1io1A e.32.1.1 62611 1rzfL 213 5.34e+01 b.1.1.1,b.1.1.2 98152,98153 1s3cA 141 5.35e+01 1ofdA 1520 5.36e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1914 232 5.43e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1ifrA 121 5.44e+01 b.1.16.1 71203 1cv8 174 5.50e+01 1cv8 d.3.1.1 37089 1zldA 120 5.59e+01 3pcgM 238 5.73e+01 3pchM b.3.6.1 22742 1r26A 125 5.82e+01 c.47.1.1 96847 1sg0A 230 5.94e+01 1poiB 260 5.96e+01 1poiB c.124.1.3 34155 1t9fA 187 6.01e+01 b.42.6.1 106710 1jpyA 137 6.03e+01 g.17.1.6 67065 1f06A 320 6.08e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1qcsA 211 6.09e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1sznA 417 6.12e+01 b.71.1.1,c.1.8.1 106162,106163 2gpzA 111 6.27e+01 1ux6A 350 6.30e+01 b.29.1.16,g.75.1.1 100145,100146 1vlbA 907 6.38e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1n4xH 120 6.41e+01 b.1.1.1 85324 1m2xA 223 6.46e+01 d.157.1.1 84764 1xnzA 264 6.53e+01 1hjrA 158 6.54e+01 1hjrA c.55.3.6 33727 1d3cA 686 6.61e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1dyoA 160 6.64e+01 1dyoA b.18.1.7 23771 1vrmA 325 6.64e+01 1w6sA 599 6.67e+01 1xypA 190 6.67e+01 1axkA b.29.1.11 24327 2ck3D 482 6.75e+01 1t82A 155 6.83e+01 d.38.1.5 106639 2d7nA 93 6.85e+01 1pxfA 111 6.88e+01 b.40.4.4 88341 1dz3A 130 6.90e+01 1dz3A c.23.1.1 31105 1tul 108 6.91e+01 1tul b.85.5.1 28373 1ogsA 497 6.96e+01 b.71.1.2,c.1.8.3 86997,86998 1tzyD 103 7.00e+01 a.22.1.1 107533 2djkA 133 7.01e+01 1uaiA 224 7.01e+01 b.29.1.18 107761 1bn7A 294 7.24e+01 1bn6A c.69.1.8 34677 1xzoA 174 7.25e+01 1y9qA 192 7.27e+01 1ee6A 197 7.47e+01 1ee6A b.80.1.1 28024 1o88A 353 7.54e+01 b.80.1.1 81178 1fs0E 138 7.57e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 2fftA 84 7.61e+01 1pe9A 361 7.73e+01 b.80.1.1 94595 2eifA 136 7.74e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1gngX 39 7.79e+01 1q0xH 221 7.81e+01 b.1.1.1,b.1.1.2 95517,95518 1v5rA 97 7.84e+01 1k9uA 78 7.97e+01 a.39.1.10 84348 1y7rA 133 8.08e+01 1hfuA 503 8.08e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2a7yA 83 8.19e+01 1zpsA 138 8.20e+01 2bl0B 145 8.26e+01 1m07A 111 8.29e+01 d.5.1.1 78328 1kn1A 160 8.36e+01 a.1.1.3 77455 1qhdA 398 8.42e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1g8iA 190 8.42e+01 1rec a.39.1.5 60363 1wy2A 351 8.52e+01 1a12A 413 8.63e+01 1a12A b.69.5.1 27663 1jbeA 128 8.81e+01 3chy c.23.1.1 62845 1bxoA 323 8.87e+01 2er7E b.50.1.2 26805 1ukgA 252 8.89e+01 b.29.1.1 99489