# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2a2pA 129 2.20e+00 1wh0A 134 2.30e+00 1iq4A 179 2.37e+00 1iq4A d.77.1.1 62641 1pmzA 86 2.47e+00 a.39.1.10 104195 1oaqL 120 2.60e+00 b.1.1.1 92708 1k3iA 656 5.11e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1dq3A 454 6.13e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1g5cA 170 6.50e+00 1g5cA c.53.2.1 60264 1xngA 268 7.52e+00 1zljA 78 8.71e+00 1x8hA 228 8.95e+00 1hlvA 131 9.65e+00 a.4.1.7,a.4.1.7 65854,65855 2djkA 133 9.73e+00 1k9uA 78 1.31e+01 a.39.1.10 84348 1ok0A 74 1.31e+01 b.5.1.1 93191 1tif 78 1.33e+01 1tif d.15.8.1 37836 1po5A 476 1.34e+01 a.104.1.1 94963 2bl0C 142 1.35e+01 1m2xA 223 1.49e+01 d.157.1.1 84764 1yovA 537 1.55e+01 1go3E 187 1.60e+01 b.40.4.5,d.230.1.1 83054,83055 1sqwA 188 1.70e+01 1rsy 152 1.71e+01 1rsy b.7.1.2 23192 1i2aA 219 1.72e+01 e.24.1.1 90660 1gmyA 261 1.75e+01 d.3.1.1 76236 1wdcB 156 1.76e+01 1wdcB a.39.1.5 17302 2fhxA 246 1.79e+01 1a4pA 96 1.86e+01 1b4cA a.39.1.2 17176 1r7lA 110 1.89e+01 d.277.1.1 104837 1whzA 70 1.98e+01 1fdr 248 2.12e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1jjtA 228 2.13e+01 1a7tA d.157.1.1 63139 1bkf 107 2.18e+01 1fkj d.26.1.1 38382 1at3A 247 2.28e+01 1at3A b.57.1.1 27021 1zmaA 118 2.43e+01 1wkvA 389 2.44e+01 1fnd 314 2.45e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1yhpA 212 2.52e+01 2bwkA 121 2.53e+01 1p30A 952 2.59e+01 b.121.2.2,b.121.2.2 93964,93965 1fgyA 127 2.59e+01 1faoA b.55.1.1 26976 1el5A 389 2.63e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1i40A 175 2.65e+01 b.40.5.1 66024 2amxA 376 2.67e+01 1zvnA 99 2.73e+01 1kk8B 139 2.79e+01 a.39.1.5 77430 1zuoA 186 2.93e+01 1ew0A 130 2.99e+01 1drmA d.110.3.2 40905 1dz3A 130 2.99e+01 1dz3A c.23.1.1 31105 1yxcA 292 3.19e+01 2bl0B 145 3.21e+01 1cxqA 162 3.21e+01 1cxqA c.55.3.2 33621 1ygtA 111 3.26e+01 1p4xA 250 3.30e+01 a.4.5.28,a.4.5.28 87784,87785 1bx1A 314 3.32e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1x4rA 99 3.35e+01 1vhqA 232 3.44e+01 c.23.16.2 100696 1xj4A 119 3.46e+01 1cfr 285 3.48e+01 1cfr c.52.1.7 33312 1fgkA 310 3.49e+01 1fgkA d.144.1.7 41693 1vr5A 547 3.50e+01 2cxaA 256 3.57e+01 1x8gA 227 3.73e+01 1rwjA 82 3.77e+01 a.138.1.1 105114 1m6yA 301 3.87e+01 a.60.13.1,c.66.1.23 78716,78717 5cytR 104 3.89e+01 1ycc a.3.1.1 15878 1q1vA 70 3.96e+01 a.159.4.1 104479 1zxkA 98 4.12e+01 1jhfA 202 4.46e+01 a.4.5.2,b.87.1.1 63057,63058 2a7oA 112 4.49e+01 1nezG 128 4.50e+01 b.1.1.1 85592 1w2yA 229 4.55e+01 a.204.1.1 109140 1wi6A 88 4.56e+01 5eau 548 4.63e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1eylA 186 4.64e+01 1wba b.42.4.1 25593 1i58A 189 4.64e+01 1b3qA d.122.1.3 61773 1tzyD 103 4.70e+01 a.22.1.1 107533 1un3A 123 4.73e+01 d.5.1.1 99646 1b7yB 785 4.73e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1vddA 228 4.74e+01 e.49.1.1 108519 1jmtA 104 4.87e+01 d.58.7.3 63180 1qtnA 164 4.88e+01 1pauA c.17.1.1 30999 1r1hA 696 4.89e+01 d.92.1.4 104756 1a2pA 110 4.97e+01 1b20A d.1.1.2 36140 1osyA 115 5.01e+01 b.1.21.1 93502 1zo0A 126 5.20e+01 1ekgA 127 5.40e+01 1dlxA d.82.2.1 40021 1wlfA 179 5.47e+01 b.52.2.3,d.31.1.1 109396,109397 1vk6A 269 5.48e+01 d.113.1.4,d.113.1.4 100851,100852 2g6fX 59 5.51e+01 1m45A 148 5.53e+01 a.39.1.5 78598 1nrgA 261 5.60e+01 b.45.1.1 80694 1k78A 149 5.62e+01 a.4.1.5,a.4.1.5 68255,68256 2f5gA 133 5.62e+01 1x3eA 165 5.73e+01 1ebfA 358 5.82e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1zn8A 180 5.84e+01 1uldA 150 6.02e+01 b.29.1.3 99545 1j3mA 129 6.08e+01 d.129.7.1 103836 1sacA 204 6.11e+01 1sacA b.29.1.5 24237 1kb9D 246 6.14e+01 a.3.1.3,f.23.11.1 77317,77318 1q7hA 153 6.15e+01 b.122.1.1,d.17.6.2 96042,96043 1h6kZ 98 6.18e+01 d.58.7.1 60686 1x42A 232 6.21e+01 1keaA 221 6.22e+01 a.96.1.2 68491 1rybA 212 6.24e+01 c.56.3.1 98098 1mkmA 249 6.29e+01 a.4.5.33,d.110.2.2 79242,79243 1wr2A 238 6.29e+01 1o75A 415 6.34e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 2cayA 145 6.35e+01 1vqoP 149 6.36e+01 1ugnA 198 6.42e+01 b.1.1.4,b.1.1.4 107828,107829 1q3eA 207 6.45e+01 b.82.3.2 95669 1dxjA 242 6.46e+01 1cnsA d.2.1.1 36244 1s6cA 183 6.70e+01 a.39.1.5 98594 1fqtA 112 6.70e+01 1fqtA b.33.1.1 24441 1rxdA 159 6.72e+01 1hcd 118 6.77e+01 1hce b.42.5.2 25624 2fgeA 995 6.83e+01 1s6lA 212 6.86e+01 1o6sB 105 6.87e+01 b.1.6.1 81096 1hjrA 158 6.94e+01 1hjrA c.55.3.6 33727 1q2yA 140 7.09e+01 d.108.1.1 95655 1vp6A 138 7.13e+01 1rypI 222 7.26e+01 d.153.1.4 41877 1wu7A 434 7.26e+01 2a8jA 420 7.45e+01 1t5iA 172 7.49e+01 c.37.1.19 106450 1hgxA 183 7.52e+01 1tc1A c.61.1.1 34027 1ihjA 98 7.60e+01 1pdr b.36.1.1 62382 1kjs 74 7.61e+01 1kjs a.50.1.1 17792 1gzsB 165 7.64e+01 a.168.1.1 76425 1gvp 87 7.64e+01 1gvp b.40.4.7 25369 1gt1A 159 7.67e+01 b.60.1.1 90515 2aamA 309 7.74e+01 1iloA 77 7.74e+01 c.47.1.1 66205 1v7pB 128 7.84e+01 d.169.1.1 108407 1j83A 180 7.85e+01 b.18.1.12 66430 1s1hC 192 7.88e+01 i.1.1.1 105156 1h97A 147 7.90e+01 1h97A a.1.1.2 60812 1wi1A 126 7.92e+01 1p2zA 968 8.02e+01 b.121.2.2,b.121.2.2 93962,93963 1ra6A 461 8.15e+01 e.8.1.4 104879 1b67A 68 8.18e+01 1a7w a.22.1.2 16474 2be1A 339 8.23e+01 2c4bA 143 8.25e+01 1df4A 68 8.53e+01 1aikN h.3.2.1 45719 1nw3A 416 8.55e+01 c.66.1.31 86288 1tu7A 208 8.59e+01 1c44A 123 8.67e+01 1qndA d.106.1.1 40795 2ch4A 320 8.75e+01 1qsgA 265 8.76e+01 1eny c.2.1.2 29935 1tjxA 159 8.82e+01 2crvA 120 8.87e+01 2cokA 113 8.88e+01 1y7rA 133 8.91e+01 1jb9A 316 8.94e+01 1fnc b.43.4.2,c.25.1.1 62840,62841