# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 5.85e-01 1eal 127 2.91e+00 1hmt b.60.1.2 27227 1b7yB 785 2.98e+00 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ok0A 74 4.80e+00 b.5.1.1 93191 1awcB 153 6.86e+00 1bd8 d.211.1.1 19156 1ux6A 350 7.89e+00 b.29.1.16,g.75.1.1 100145,100146 1xrtA 467 9.38e+00 1po5A 476 1.26e+01 a.104.1.1 94963 1n8pA 393 1.29e+01 c.67.1.3 80304 2ff4A 388 1.30e+01 1suoA 476 1.41e+01 a.104.1.1 106026 1iq4A 179 1.61e+01 1iq4A d.77.1.1 62641 1wh0A 134 1.65e+01 1v6fA 151 1.65e+01 d.109.1.2 108395 1yhfA 115 1.80e+01 1dq3A 454 1.85e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1cc1L 498 1.90e+01 1h2rL e.18.1.1 43301 1d2eA 397 1.97e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1xb2A 409 1.99e+01 2g8yA 385 2.14e+01 1pswA 348 2.18e+01 c.87.1.7 88287 1zn8A 180 2.30e+01 1w91A 503 2.31e+01 1yaaA 412 2.33e+01 1ajsA c.67.1.1 34280 2bfgA 503 2.37e+01 1t2xA 639 2.38e+01 b.1.18.2,b.18.1.1,b.69.1.1 106292,106293,106294 2bs9A 503 2.38e+01 1gof 639 2.41e+01 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1k3iA 656 2.41e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1o1uA 127 2.60e+01 b.60.1.2 81076 1pg7W 210 2.83e+01 b.1.1.1,b.1.1.2 94682,94683 1es7A 116 3.12e+01 2tgi g.17.1.2 44786 1rewA 114 3.15e+01 g.17.1.2 97334 4xiaA 393 3.26e+01 4xis c.1.15.3 29439 1xlaA 394 3.38e+01 4xis c.1.15.3 29445 1mkeA 152 3.42e+01 b.55.1.4 79231 1yc1A 264 3.52e+01 1tv5A 443 3.61e+01 1dl7L 109 3.75e+01 1mfa b.1.1.1 20498 2mysA 843 3.87e+01 1lvk b.34.3.1,c.37.1.9 24557,32154 1mvwA 840 3.87e+01 i.15.1.1 79523 1pmzA 86 3.88e+01 a.39.1.10 104195 1gq8A 319 3.92e+01 b.80.1.5 70350 1n0wA 243 4.04e+01 c.37.1.11 79772 1zv1A 65 4.04e+01 1zovA 386 4.38e+01 1j83A 180 4.57e+01 b.18.1.12 66430 1lwuB 323 4.58e+01 d.171.1.1,h.1.8.1 74310,74311 1wlfA 179 4.60e+01 b.52.2.3,d.31.1.1 109396,109397 1l9cA 389 4.71e+01 c.3.1.2,d.16.1.3 77815,77816 2a2pA 129 4.84e+01 1yuhA 211 4.85e+01 1mfa b.1.1.1,b.1.1.2 20098,21130 1el5A 389 4.85e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1hey 128 5.16e+01 3chy c.23.1.1 31061 1s1iH 191 5.33e+01 i.1.1.1 105182 1jvkA 216 5.35e+01 b.1.1.1,b.1.1.2 71897,71898 1lbvA 252 5.44e+01 e.7.1.1 73813 1m4vA 204 5.46e+01 b.40.2.2,d.15.6.1 74459,74460 1nfdE 212 5.59e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 1hm7A 336 5.61e+01 a.128.1.4 76719 1bn7A 294 5.65e+01 1bn6A c.69.1.8 34677 1ocwL 120 5.66e+01 b.1.1.1 92780 1g5cA 170 5.81e+01 1g5cA c.53.2.1 60264 1tt5A 531 5.91e+01 c.111.1.2 107291 1sm3L 215 5.92e+01 8fabA b.1.1.1,b.1.1.2 20368,21360 6cgt 684 5.95e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21837,22506,27744,28731 1oaqL 120 6.02e+01 b.1.1.1 92708 1fa0A 537 6.09e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1yovA 537 6.11e+01 1ev13 239 6.18e+01 1aym3 5cgt 684 6.22e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21824,22493,27731,28718 2azqA 311 6.23e+01 1r4mA 529 6.30e+01 c.111.1.2 96999 1gigL 210 6.33e+01 1mfa b.1.1.1,b.1.1.2 19910,21004 4cgt 678 6.37e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21825,22494,27732,28719 2fb4L 216 6.37e+01 8fabA b.1.1.1,b.1.1.2 19846,20950 8cgtA 684 6.37e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21831,22500,27738,28725 1cgt 684 6.38e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21815,22484,27722,28709 1ngqL 215 6.39e+01 1mfa b.1.1.1,b.1.1.2 20092,21124 1suh 146 6.57e+01 1edhA b.1.6.1 22206 1reuA 103 6.59e+01 g.17.1.2 97333 2fpoA 202 6.72e+01 1f89A 291 6.77e+01 d.160.1.1 64988 1yo8A 634 6.77e+01 1cqwA 295 6.81e+01 1b6g c.69.1.8 34679 1df7A 159 6.82e+01 3dfr c.71.1.1 34885 1cicA 214 6.84e+01 8fabA b.1.1.1,b.1.1.2 19964,21024 1lf1A 308 6.86e+01 c.1.8.3 73877 1wznA 252 6.92e+01 1j3mA 129 7.00e+01 d.129.7.1 103836 1a6wL 109 7.13e+01 1mfa b.1.1.1 20252 1a6vL 110 7.19e+01 1mfa b.1.1.1 20256 1g13A 162 7.23e+01 1g13A b.95.1.1 60194 1oayL 110 7.28e+01 b.1.1.1 92737 2atvA 196 7.29e+01 1e57A 188 7.31e+01 1auyA b.121.4.6 59259 1ntyA 311 7.34e+01 a.87.1.1,b.55.1.1 103873,103874 2ajfE 180 7.34e+01 1bkf 107 7.35e+01 1fkj d.26.1.1 38382 1qtfA 246 7.48e+01 1agjA b.47.1.1 25830 1vr0A 247 7.51e+01 1dt2A 245 7.53e+01 b.47.1.1 76138 2ag9A 164 7.57e+01 1ndaA 491 7.74e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30525,30526,40194 1wu2A 396 7.78e+01 1sp4B 205 7.83e+01 1zmaA 118 7.86e+01 1ue9A 80 7.88e+01 b.34.2.1 99255 1a6uL 108 7.88e+01 1mfa b.1.1.1 20254 1qdqA 253 7.89e+01 1theB d.3.1.1 37064 2bjmL 110 7.91e+01 2dccA 256 7.93e+01 1eymA 107 8.00e+01 1fkj d.26.1.1 38403 1oauL 110 8.00e+01 b.1.1.1 92721 1aogA 485 8.08e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30517,30518,40190 1bzlA 486 8.08e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30521,30522,40192 1gxfA 492 8.08e+01 c.3.1.5,c.3.1.5,d.87.1.1 90527,90528,90529 1gg3A 279 8.14e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1p8tA 285 8.21e+01 c.10.2.7 87982 2dd8S 202 8.26e+01 1r3nA 462 8.26e+01 c.56.5.4,d.58.19.1 96945,96946 1r43A 463 8.26e+01 c.56.5.4,d.58.19.1 96969,96970 1z7dA 433 8.27e+01 2ag4A 164 8.33e+01 1vhqA 232 8.35e+01 c.23.16.2 100696 1zczA 464 8.57e+01 1bl4A 107 8.57e+01 1fkj d.26.1.1 38393 1oznA 285 8.61e+01 c.10.2.7 87621 1ps1A 337 8.77e+01 1ps1A a.128.1.4 19450 1qlrB 232 8.85e+01 1igtB b.1.1.1,b.1.1.2 19835,20939 1oy1A 228 8.90e+01 c.23.16.2 87548 1auyA 189 8.91e+01 1auyA b.121.4.6 23311