# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xngA 268 2.07e-01 1d2eA 397 6.03e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1dq3A 454 7.48e-01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yhfA 115 2.07e+00 1wckA 220 3.26e+00 1han 297 3.52e+00 1han d.32.1.3,d.32.1.3 38506,38507 1lkdA 297 3.52e+00 d.32.1.3,d.32.1.3 78059,78060 1l1jA 239 4.06e+00 b.47.1.1 84516 1wh0A 134 4.16e+00 1dg6A 191 4.56e+00 1d4vB b.22.1.1 23883 1gg4A 452 5.27e+00 1gg4A c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1zvnA 99 5.35e+00 1umhA 184 5.43e+00 b.18.1.21 99605 2bwrA 401 6.45e+00 1tlyA 278 7.06e+00 f.4.6.1 107143 1oaqL 120 7.18e+00 b.1.1.1 92708 1pmzA 86 7.83e+00 a.39.1.10 104195 1zn8A 180 8.66e+00 1a6wL 109 9.58e+00 1mfa b.1.1.1 20252 1h09A 338 9.76e+00 b.109.1.1,c.1.8.8 83420,83421 1kk1A 410 1.02e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2fimA 276 1.08e+01 1chmA 401 1.12e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1lvwA 295 1.14e+01 c.68.1.6 84723 1iloA 77 1.17e+01 c.47.1.1 66205 1ru8A 232 1.25e+01 c.26.2.1 97849 1k2yX 463 1.27e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1p5dX 463 1.34e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1zljA 78 1.40e+01 1q79A 514 1.54e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1xcbA 211 1.56e+01 a.4.5.38,c.2.1.12 109552,109553 1qmeA 702 1.62e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1j83A 180 1.68e+01 b.18.1.12 66430 1sh0A 510 1.76e+01 e.8.1.4 98876 1hoe 74 1.77e+01 1hoe b.5.1.1 22833 1f5aA 513 1.81e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1m6yA 301 1.87e+01 a.60.13.1,c.66.1.23 78716,78717 2b43A 526 1.95e+01 1ok0A 74 1.98e+01 b.5.1.1 93191 1gq8A 319 2.02e+01 b.80.1.5 70350 1nezG 128 2.03e+01 b.1.1.1 85592 1h1aA 191 2.05e+01 b.29.1.11 83450 1xnkA 196 2.06e+01 1o91A 178 2.12e+01 b.22.1.1 92656 2axwA 134 2.20e+01 1el5A 389 2.40e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 2azqA 311 2.45e+01 1hlvA 131 2.51e+01 a.4.1.7,a.4.1.7 65854,65855 1theA 260 2.57e+01 1theB d.3.1.1 37056 2ch4A 320 2.64e+01 1zxkA 98 2.87e+01 1z6bA 154 2.89e+01 1nlqA 108 2.91e+01 b.121.3.1 85853 1xypA 190 2.94e+01 1axkA b.29.1.11 24327 1uurA 473 3.01e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1iq4A 179 3.02e+01 1iq4A d.77.1.1 62641 2a2pA 129 3.05e+01 1e3aB 560 3.05e+01 1ajqB 1sz6B 263 3.21e+01 1nciA 110 3.30e+01 1edhA b.1.6.1 22191 1ca1 370 3.39e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1wbiA 129 3.40e+01 1lrwA 600 3.42e+01 b.70.1.1 91111 2cokA 113 3.48e+01 1yruB 74 3.57e+01 1xe1A 116 3.71e+01 b.43.3.1 109571 1opoA 348 3.76e+01 b.121.4.7 87240 1bqhG 129 3.81e+01 1cd8 b.1.1.1 19715 1yovA 537 3.81e+01 1o6sB 105 3.89e+01 b.1.6.1 81096 1khoA 370 3.89e+01 a.124.1.1,b.12.1.3 72489,72490 1zkkA 167 3.96e+01 1rzfL 213 4.00e+01 b.1.1.1,b.1.1.2 98152,98153 1nqeA 594 4.04e+01 f.4.3.3 86027 1hfuA 503 4.06e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1at3A 247 4.23e+01 1at3A b.57.1.1 27021 1p5hA 428 4.24e+01 c.123.1.1 87802 1u3oA 82 4.28e+01 1psuA 140 4.52e+01 d.38.1.5 88285 1gk9B 557 4.56e+01 1sznA 417 4.58e+01 b.71.1.1,c.1.8.1 106162,106163 2fvgA 340 4.62e+01 1gotB 340 4.84e+01 1tbgA b.69.4.1 27648 1pxfA 111 4.89e+01 b.40.4.4 88341 1exrA 148 4.89e+01 1cll a.39.1.5 17299 1f6fB 210 4.91e+01 1axiB b.1.2.1,b.1.2.1 22033,22034 2fs2A 151 4.94e+01 1zczA 464 4.98e+01 1eylA 186 5.03e+01 1wba b.42.4.1 25593 1poiB 260 5.15e+01 1poiB c.124.1.3 34155 2a7yA 83 5.16e+01 1ass 159 5.20e+01 1a6dA c.8.5.2 30818 1tif 78 5.23e+01 1tif d.15.8.1 37836 1s6lA 212 5.34e+01 1914 232 5.35e+01 1914 d.49.1.1,d.49.1.1 83028,83029 1gmyA 261 5.39e+01 d.3.1.1 76236 1g4yR 148 5.40e+01 1cll a.39.1.5 60252 1y9qA 192 5.61e+01 1wdcB 156 5.70e+01 1wdcB a.39.1.5 17302 1rsy 152 5.70e+01 1rsy b.7.1.2 23192 1pguA 615 5.74e+01 b.69.4.1,b.69.4.1 88069,88070 2d13A 227 5.77e+01 1f06A 320 5.84e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1bn7A 294 5.89e+01 1bn6A c.69.1.8 34677 1afb1 154 5.89e+01 1rtm1 1xovA 326 5.90e+01 2amlA 373 5.90e+01 1ml9A 302 6.18e+01 b.85.7.1 79282 2bl0C 142 6.30e+01 2f5tX 233 6.34e+01 1zldA 120 6.34e+01 1wdcC 156 6.41e+01 1wdcC a.39.1.5 17317 1mfa 247 6.55e+01 1mfa b.1.1.1,b.1.1.1 19888,19889 1u24A 337 6.56e+01 1vhzA 198 6.65e+01 d.113.1.1 100718 1fsgA 233 6.69e+01 1qk3A c.61.1.1 34029 1hdmA 201 6.72e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1pu5A 164 6.72e+01 b.95.1.1 104310 2f3yA 148 6.75e+01 1yhpA 212 6.82e+01 1c24A 263 6.91e+01 1c24A d.127.1.1 41148 2ew2A 316 6.93e+01 1zkiA 133 7.12e+01 1xnzA 264 7.16e+01 1qtqA 553 7.18e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1pne 140 7.20e+01 1pne d.110.1.1 40866 1ogsA 497 7.36e+01 b.71.1.2,c.1.8.3 86997,86998 1o6uA 403 7.36e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1io1A 398 7.41e+01 1io1A e.32.1.1 62611 1o88A 353 7.55e+01 b.80.1.1 81178 1xrsA 516 7.56e+01 1ojqA 212 7.59e+01 d.166.1.1 93146 1amuA 563 7.60e+01 1amuA e.23.1.1 43351 1air 353 7.60e+01 1air b.80.1.1 28018 1hgxA 183 7.71e+01 1tc1A c.61.1.1 34027 1j8mF 297 7.76e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1suwA 249 7.87e+01 e.52.1.1 106027 2djkA 133 7.91e+01 1ifrA 121 7.93e+01 b.1.16.1 71203 3pcgM 238 7.96e+01 3pchM b.3.6.1 22742 1j8yF 297 8.10e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1kk8B 139 8.18e+01 a.39.1.5 77430 1r26A 125 8.33e+01 c.47.1.1 96847 2axoA 270 8.39e+01 2av9A 147 8.42e+01 1wruA 379 8.86e+01 1sjyA 159 8.91e+01 d.113.1.1 98900 1m2xA 223 8.91e+01 d.157.1.1 84764