# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2eA 397 8.22e-01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1wh0A 134 1.73e+00 1oaqL 120 1.80e+00 b.1.1.1 92708 1a6wL 109 1.95e+00 1mfa b.1.1.1 20252 1v52A 133 2.49e+00 1xngA 268 2.65e+00 2a2pA 129 3.23e+00 1k3iA 656 3.49e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1iq4A 179 3.56e+00 1iq4A d.77.1.1 62641 1v6fA 151 3.82e+00 d.109.1.2 108395 1gof 639 4.12e+00 1gof b.1.18.2,b.18.1.1,b.69.1.1 21807,23709,27631 1theA 260 4.15e+00 1theB d.3.1.1 37056 1g5cA 170 4.21e+00 1g5cA c.53.2.1 60264 1p5hA 428 5.45e+00 c.123.1.1 87802 1mkeA 152 5.69e+00 b.55.1.4 79231 1yyvA 131 6.02e+00 1mszA 86 6.63e+00 d.68.7.1 79428 1pmzA 86 6.81e+00 a.39.1.10 104195 1dq3A 454 7.10e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1xhbA 472 7.64e+00 2djkA 133 7.67e+00 1x8hA 228 9.12e+00 1po5A 476 1.09e+01 a.104.1.1 94963 1hlvA 131 1.15e+01 a.4.1.7,a.4.1.7 65854,65855 1gmyA 261 1.20e+01 d.3.1.1 76236 2sas 185 1.45e+01 2sas a.39.1.5 17258 1zljA 78 1.47e+01 1m2xA 223 1.59e+01 d.157.1.1 84764 1ok0A 74 1.71e+01 b.5.1.1 93191 1i2aA 219 1.72e+01 e.24.1.1 90660 1hoe 74 1.75e+01 1hoe b.5.1.1 22833 2bl0C 142 1.75e+01 1whzA 70 1.85e+01 1jjeA 222 1.87e+01 1a7tA d.157.1.1 63117 1tif 78 1.96e+01 1tif d.15.8.1 37836 1yovA 537 2.11e+01 1sqwA 188 2.25e+01 1zmaA 118 2.25e+01 2bwkA 121 2.30e+01 1jjtA 228 2.40e+01 1a7tA d.157.1.1 63139 1ygtA 111 2.46e+01 1fdr 248 2.55e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1kskA 234 2.57e+01 d.66.1.5,d.265.1.3 72920,90389 2fhxA 246 2.60e+01 1at3A 247 2.65e+01 1at3A b.57.1.1 27021 1cfr 285 2.75e+01 1cfr c.52.1.7 33312 1zvnA 99 2.86e+01 1go3E 187 2.88e+01 b.40.4.5,d.230.1.1 83054,83055 1fnd 314 2.96e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1el5A 389 2.98e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1u3oA 82 2.99e+01 1zuoA 186 2.99e+01 1obwA 175 3.03e+01 2prd b.40.5.1 25416 1yhpA 212 3.10e+01 1xtaA 221 3.13e+01 1wdcB 156 3.21e+01 1wdcB a.39.1.5 17302 1t5yA 190 3.24e+01 b.122.1.1,d.17.6.3 106495,106496 1m6yA 301 3.29e+01 a.60.13.1,c.66.1.23 78716,78717 1a4pA 96 3.36e+01 1b4cA a.39.1.2 17176 1fnc 314 3.43e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1ugnA 198 3.55e+01 b.1.1.4,b.1.1.4 107828,107829 1vsd 152 3.60e+01 1cxqA c.55.3.2 33625 1w2yA 229 3.60e+01 a.204.1.1 109140 1uldA 150 3.66e+01 b.29.1.3 99545 1ru8A 232 3.66e+01 c.26.2.1 97849 1cxqA 162 3.69e+01 1cxqA c.55.3.2 33621 1dz3A 130 3.72e+01 1dz3A c.23.1.1 31105 1bkf 107 3.74e+01 1fkj d.26.1.1 38382 1js8A 394 3.79e+01 a.86.1.1,b.112.1.1 67219,67220 1x4rA 99 3.80e+01 1v7pB 128 3.86e+01 d.169.1.1 108407 1v61A 132 4.01e+01 b.55.1.1 108389 1i40A 175 4.01e+01 b.40.5.1 66024 1fgkA 310 4.02e+01 1fgkA d.144.1.7 41693 1x8gA 227 4.11e+01 2cxaA 256 4.13e+01 1s1hC 192 4.24e+01 i.1.1.1 105156 1b7yB 785 4.32e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1yioA 208 4.35e+01 1jhfA 202 4.54e+01 a.4.5.2,b.87.1.1 63057,63058 1bx1A 314 4.57e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1vddA 228 4.61e+01 e.49.1.1 108519 1rwjA 82 4.63e+01 a.138.1.1 105114 1wi6A 88 4.63e+01 1kk8B 139 4.64e+01 a.39.1.5 77430 1yxcA 292 4.68e+01 1k9uA 78 4.72e+01 a.39.1.10 84348 1ew0A 130 4.85e+01 1drmA d.110.3.2 40905 1sz6B 263 4.98e+01 1qtnA 164 5.01e+01 1pauA c.17.1.1 30999 1q1vA 70 5.02e+01 a.159.4.1 104479 2bl0B 145 5.03e+01 1tit 98 5.18e+01 1tit b.1.1.4 21716 1fgyA 127 5.20e+01 1faoA b.55.1.1 26976 1vp6A 138 5.24e+01 1jmtA 104 5.25e+01 d.58.7.3 63180 1v88A 130 5.25e+01 b.55.1.1 108423 1hq3D 103 5.34e+01 1aoiB a.22.1.1 16464 1dhpA 292 5.40e+01 1dhpA c.1.10.1 29097 1xj4A 119 5.41e+01 1ml9A 302 5.48e+01 b.85.7.1 79282 1hjrA 158 5.70e+01 1hjrA c.55.3.6 33727 1p4xA 250 5.71e+01 a.4.5.28,a.4.5.28 87784,87785 1i58A 189 5.77e+01 1b3qA d.122.1.3 61773 5cytR 104 5.85e+01 1ycc a.3.1.1 15878 1zxkA 98 5.94e+01 1p30A 952 5.96e+01 b.121.2.2,b.121.2.2 93964,93965 1kx5B 102 5.99e+01 a.22.1.1 77594 1r7lA 110 6.08e+01 d.277.1.1 104837 2crvA 120 6.19e+01 2f5gA 133 6.22e+01 1ukmB 128 6.31e+01 d.169.1.1 99500 1lswA 131 6.39e+01 d.110.3.2 78181 1vhqA 232 6.46e+01 c.23.16.2 100696 1k78A 149 6.48e+01 a.4.1.5,a.4.1.5 68255,68256 1yaiA 151 6.48e+01 1yaiA b.1.8.1 22289 1mvwB 145 6.49e+01 i.15.1.1 79524 2a6nA 292 6.49e+01 1f5aA 513 6.49e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1ruxA 951 6.62e+01 1dhx 1s6cA 183 6.62e+01 a.39.1.5 98594 1tzyD 103 6.67e+01 a.22.1.1 107533 1gzsB 165 6.71e+01 a.168.1.1 76425 1ekgA 127 6.73e+01 1dlxA d.82.2.1 40021 1vk6A 269 6.82e+01 d.113.1.4,d.113.1.4 100851,100852 1vr5A 547 6.91e+01 1osyA 115 6.94e+01 b.1.21.1 93502 1j3mA 129 6.96e+01 d.129.7.1 103836 1zckA 154 7.04e+01 1ihjA 98 7.05e+01 1pdr b.36.1.1 62382 2g6fX 59 7.09e+01 1rc9A 221 7.11e+01 1yhfA 115 7.26e+01 1foeA 377 7.41e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1zn8A 180 7.42e+01 1zo0A 126 7.42e+01 2amxA 376 7.43e+01 1g6oA 330 7.44e+01 1g6oA c.37.1.11 32430 1iloA 77 7.45e+01 c.47.1.1 66205 1rwiA 270 7.45e+01 b.68.9.1 97987 1c44A 123 7.45e+01 1qndA d.106.1.1 40795 1a2pA 110 7.61e+01 1b20A d.1.1.2 36140 1j83A 180 7.65e+01 b.18.1.12 66430 2a8jA 420 7.76e+01 2a6lA 292 7.81e+01 1ebfA 358 7.84e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1p3jA 217 7.95e+01 c.37.1.1,g.41.2.1 94022,94023 1i0rA 169 8.12e+01 1i0rA b.45.1.2 61489 1rsy 152 8.16e+01 1rsy b.7.1.2 23192 1nrgA 261 8.21e+01 b.45.1.1 80694 1wkvA 389 8.26e+01 1wlfA 179 8.32e+01 b.52.2.3,d.31.1.1 109396,109397 1wu7A 434 8.40e+01 1i0sA 169 8.41e+01 1i0rA b.45.1.2 61491 1nw3A 416 8.43e+01 c.66.1.31 86288 5eau 548 8.46e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1tu1A 148 8.50e+01 d.107.1.3 107316 1q79A 514 8.51e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1gvp 87 8.57e+01 1gvp b.40.4.7 25369 2b95A 106 8.58e+01 1un3A 123 8.59e+01 d.5.1.1 99646 1ee6A 197 8.59e+01 1ee6A b.80.1.1 28024 1vkkA 154 8.63e+01 d.109.1.2 108669 1x42A 232 8.64e+01 1ws0A 156 8.88e+01 1hgxA 183 8.94e+01 1tc1A c.61.1.1 34027