# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f1kA 279 1.37e+00 1ggvA 232 1.87e+00 1din c.69.1.9 34683 1din 236 1.92e+00 1din c.69.1.9 34682 2cb2A 318 2.08e+00 1zi8A 236 2.53e+00 1o17A 345 4.34e+00 a.46.2.1,c.27.1.1 80765,80766 1avgL 41 4.62e+00 1ppbL b.47.1.2 26216 1htjF 210 5.88e+00 1htjF a.91.1.1 61254 1nmtA 392 6.36e+00 1nmtA d.108.1.2,d.108.1.2 40823,40824 2ucz 165 6.85e+00 1u9aA d.20.1.1 38330 1kshA 186 7.13e+00 c.37.1.8 72914 1vemA 516 8.67e+00 1g2iA 166 8.81e+00 1g2iA c.23.16.2 31438 1itcA 516 8.95e+00 b.3.1.1,c.1.8.1 83705,83706 1b9zA 516 1.09e+01 1b9zA b.3.1.1,c.1.8.1 22528,28798 1iicA 422 1.28e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1g5bA 221 1.31e+01 1g5bA d.159.1.3 60261 1uw4A 91 1.45e+01 d.58.7.4 100071 2agcA 162 1.53e+01 1cbjA 151 1.55e+01 1mfmA b.1.8.1 22213 1q0eA 152 1.56e+01 b.1.8.1 95504 1yyaA 250 1.56e+01 1b47A 304 1.56e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1to4A 156 1.71e+01 b.1.8.1 107162 2cblA 305 1.77e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1n1mA 728 1.81e+01 b.70.3.1,c.69.1.24 79815,79816 1vjeA 166 1.90e+01 d.185.1.2 100807 1yvhA 329 1.95e+01 5bcaA 516 1.98e+01 1b9zA b.3.1.1,c.1.8.1 22529,28799 1e9pA 151 2.00e+01 1mfmA b.1.8.1 22215 2sodB 152 2.19e+01 1mfmA b.1.8.1 22242 1jlyA 304 2.24e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1a5mC 566 2.46e+01 1ubpC b.92.1.1,c.1.9.2 28423,29045 1b35B 255 2.47e+01 1b35B b.121.4.1 23334 1b1gA 75 2.65e+01 1psrA a.39.1.1 17151 2ax4A 198 2.68e+01 1o7iA 119 2.80e+01 b.40.4.3 86642 1innA 166 2.82e+01 1j98A d.185.1.2 62608 4icb 76 2.87e+01 4icb a.39.1.1 17145 1azo 232 2.88e+01 1azo c.52.1.14 33329 1ab2 109 2.90e+01 1lckA d.93.1.1 40506 1jlxA 304 2.95e+01 1jlyA b.42.3.1,b.42.3.1 25583,25584 1f9zA 135 2.96e+01 1qipA d.32.1.1 38484 1b4tA 153 3.12e+01 1mfmA b.1.8.1 22283 1wzvA 155 3.23e+01 1fa8A 135 3.28e+01 1qipA d.32.1.1 38486 1yadA 221 3.31e+01 1uwsA 489 3.54e+01 c.1.8.4 108073 1ig5A 75 3.55e+01 4icb a.39.1.1 62363 1bmr 68 3.56e+01 1aho g.3.7.1 44144 1ih8A 271 3.59e+01 2nsyA c.26.2.1 62377 2fg9A 178 3.59e+01 1azvA 153 3.60e+01 1mfmA b.1.8.1 22247 1k0wA 231 3.63e+01 c.74.1.1 77220 1pbgA 468 3.74e+01 1e70M c.1.8.4 28946 1jfzA 154 3.80e+01 a.149.1.1 66655 1jdiA 231 3.81e+01 c.74.1.1 66551 1yrvA 169 3.81e+01 2cxxA 190 3.88e+01 1f2fA 104 3.92e+01 1fmk d.93.1.1 40455 1bb8 71 3.99e+01 2bb8 d.10.1.1 37478 1ub4C 85 4.16e+01 b.129.1.1 88401 1xorA 349 4.22e+01 1f1gA 154 4.23e+01 b.1.8.1 76153 1ibsA 317 4.31e+01 c.61.1.2,c.61.1.2 66107,66108 1shaA 104 4.32e+01 1fmk d.93.1.1 40424 3icb 75 4.33e+01 4icb a.39.1.1 17147 1gowA 489 4.34e+01 1qvbA c.1.8.4 28981 2bb8 71 4.36e+01 2bb8 d.10.1.1 37480 1shbA 104 4.40e+01 1fmk d.93.1.1 40425 1ffkP 84 4.42e+01 1ffkP d.12.1.1 37493 1ejxC 567 4.43e+01 b.92.1.1,c.1.9.2 83184,83185 2fm8A 135 4.52e+01 1y1uA 585 4.57e+01 1o4rA 108 4.59e+01 d.93.1.1 92469 1cpzA 68 4.62e+01 1aw0 d.58.17.1 39351 1fwcC 567 4.64e+01 1ubpC b.92.1.1,c.1.9.2 28410,29032 1yumA 242 4.64e+01 1rpyA 114 4.66e+01 d.93.1.1 97718 1tbbA 332 4.67e+01 a.211.1.2 106741 1jcv 153 4.67e+01 1mfmA b.1.8.1 22279 1w3jA 468 4.72e+01 c.1.8.4 109156 1ny9A 143 5.00e+01 a.181.1.1 86401 1i4sA 147 5.10e+01 a.149.1.1 66026 1b69A 69 5.24e+01 2bb8 d.10.1.1 37479 1pbuA 162 5.35e+01 d.58.46.1 88030 2ag4A 164 5.38e+01 2cbuA 468 5.39e+01 2b7eA 59 5.40e+01 2bjbA 462 5.50e+01 1jkxA 212 5.64e+01 c.65.1.1 66813 1vg5A 73 5.78e+01 1q15A 503 5.98e+01 c.26.2.1,d.153.1.1 95538,95539 1qrjB 199 6.06e+01 1qrjB a.28.3.1 16952 1i3zA 103 6.15e+01 d.93.1.1 83667 1zd9A 188 6.26e+01 1vzoA 355 6.27e+01 d.144.1.7 108971 1nmoA 247 6.33e+01 c.135.1.1 91980 2d2jA 329 6.42e+01 1x0vA 354 6.54e+01 1y2kA 349 6.56e+01 1ju5A 109 6.62e+01 d.93.1.1 77173 1t0qC 86 6.70e+01 d.15.12.1 106222 1zy4A 303 6.77e+01 1xahA 354 6.79e+01 1dkrA 317 6.81e+01 1dkuA c.61.1.2,c.61.1.2 34114,34115 1g8yA 279 6.88e+01 1g8yA c.37.1.11 32302 2agyA 361 6.89e+01 1sqrA 95 6.89e+01 3pbgA 468 6.98e+01 1e70M c.1.8.4 28951 1nzjA 298 7.10e+01 c.26.1.1 92377 1x9zA 188 7.27e+01 1kolA 398 7.27e+01 b.35.1.2,c.2.1.1 77474,77475 1i4yA 114 7.34e+01 2mhr a.24.4.1 61738 1uurA 473 7.54e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1g8iA 190 7.63e+01 1rec a.39.1.5 60363 1a1aA 107 7.68e+01 1fmk d.93.1.1 40449 2a19B 284 7.77e+01 1a5kC 566 7.79e+01 1ubpC b.92.1.1,c.1.9.2 28425,29047 2ez6A 221 7.89e+01 2ag9A 164 7.94e+01 1j7iA 264 7.94e+01 1j7iA d.144.1.6 62694 2aieP 203 7.99e+01 1m2kA 249 8.10e+01 c.31.1.5 84754 1a87 321 8.12e+01 1a87 f.1.1.1 43380 1dkuA 317 8.25e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1zhvA 134 8.32e+01 1nlfA 279 8.36e+01 c.37.1.11 85850 1qvbA 481 8.46e+01 1qvbA c.1.8.4 28983 1b9rA 105 8.61e+01 1ayfA d.15.4.1 37683 1k1gA 131 8.61e+01 d.51.1.1 68015 1garA 212 8.74e+01 2gar c.65.1.1 34162 1ejrC 567 8.77e+01 1ubpC b.92.1.1,c.1.9.2 28420,29042 1t6t1 118 8.80e+01 1jm7B 117 8.86e+01 g.44.1.1 66881 1lv7A 257 8.91e+01 c.37.1.20 78232 1y9lA 115 8.99e+01