# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2sak 121 2.92e-01 2sak d.15.5.1 37711 1wjxA 122 3.44e-01 1u7bA 261 9.33e-01 2ch8A 201 1.07e+00 1yvhA 329 1.41e+00 1mw7A 240 1.47e+00 e.39.1.1 79557 1q5hA 147 1.59e+00 b.85.4.1 95893 2b5iC 199 1.61e+00 2djkA 133 2.08e+00 1vetA 124 2.48e+00 d.110.7.1 108553 2fkiA 126 2.52e+00 1syxB 86 2.58e+00 1xs1A 193 2.84e+00 1go4A 205 2.92e+00 d.135.1.1 70292 2bsjA 133 2.95e+00 1aoeA 192 3.08e+00 1aoeA c.71.1.1 34923 1ig5A 75 3.16e+00 4icb a.39.1.1 62363 1ze3C 205 3.32e+00 2c1iA 431 3.33e+00 1unnC 115 3.66e+00 d.240.1.1 99680 2a1rA 430 3.79e+00 1whzA 70 3.92e+00 1uheA 97 3.99e+00 1o4rA 108 4.05e+00 d.93.1.1 92469 1mtpB 43 4.19e+00 1wi0A 113 4.44e+00 1vqoU 66 4.72e+00 1g5bA 221 5.07e+00 1g5bA d.159.1.3 60261 1k0wA 231 5.58e+00 c.74.1.1 77220 1f35A 162 5.77e+00 1f35A b.94.1.1 59628 1mg4A 113 6.57e+00 d.15.11.1 84953 1knwA 425 6.61e+00 b.49.2.3,c.1.6.1 90969,90970 2aj6A 159 6.66e+00 1qqrA 138 6.86e+00 1bmlC d.15.5.1 37721 1rwzA 245 7.03e+00 d.131.1.2,d.131.1.2 98005,98006 1jb0D 138 7.21e+00 1jb0D d.187.1.1 62823 1wmhA 89 7.28e+00 2fflA 756 7.43e+00 1at0 145 7.53e+00 1at0 b.86.1.1 28374 2bayA 61 7.62e+00 2f1lA 187 7.86e+00 2ey4C 82 7.96e+00 1ok7A 366 8.08e+00 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1khxA 227 8.59e+00 b.26.1.1 68631 1f7dA 136 9.16e+00 1dun b.85.4.1 28353 1iz5A 249 9.55e+00 d.131.1.2,d.131.1.2 83834,83835 1bfg 146 9.58e+00 1bfg b.42.1.1 25485 1gpr 162 9.80e+00 1gpr b.84.3.1 28267 1i3zA 103 9.86e+00 d.93.1.1 83667 2arcA 164 9.88e+00 2arcA b.82.4.1 28148 1lq8B 31 1.02e+01 1pcfA 66 1.06e+01 1pcfA d.18.1.1 38142 1tp9A 162 1.07e+01 1si2A 149 1.08e+01 b.34.14.1 105569 2f1kA 279 1.12e+01 2fsrA 195 1.20e+01 1flcB 175 1.21e+01 1flcB h.3.1.1 45716 2fz4A 237 1.21e+01 1cojA 212 1.23e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2axwA 134 1.24e+01 2gfaA 119 1.24e+01 1tzpA 255 1.29e+01 d.65.1.3 107520 1t8hA 277 1.31e+01 d.194.1.2 106664 1mml 265 1.33e+01 1mml e.8.1.2 43015 1gutA 68 1.33e+01 b.40.6.1 65576 1pz1A 333 1.34e+01 c.1.7.1 95390 1v05A 96 1.38e+01 1z1nX 560 1.40e+01 1ik9A 213 1.41e+01 b.59.1.1,h.1.11.1 66176,66177 1oo0A 147 1.43e+01 d.232.1.1 87182 2agaA 190 1.43e+01 2bkyA 97 1.45e+01 1azo 232 1.49e+01 1azo c.52.1.14 33329 1j55A 95 1.51e+01 a.39.1.2 77078 1r8eA 278 1.52e+01 a.6.1.3,d.60.1.1 104843,104844 1rypJ 204 1.57e+01 d.153.1.4 41878 1mzbA 136 1.65e+01 a.4.5.42 91497 1sqhA 312 1.71e+01 d.108.1.5 98966 1bueA 265 1.71e+01 1btl e.3.1.1 42727 1v4pA 157 1.79e+01 1k7cA 233 1.79e+01 c.23.10.4 68267 1n5nA 180 1.80e+01 d.167.1.1 85336 1p65A 73 1.83e+01 d.254.1.1 94156 2agyA 361 1.86e+01 1fr3A 67 1.88e+01 1fr3A b.40.6.1 25436 2cfxA 144 1.92e+01 1vq0A 302 1.93e+01 1wi6A 88 2.01e+01 1lfc 25 2.02e+01 j.3.1.5 46074 1zowA 313 2.04e+01 1krs 120 2.06e+01 1krs b.40.4.1 25256 1m40A 263 2.06e+01 e.3.1.1 74437 1vpkA 378 2.08e+01 1xewX 182 2.10e+01 1r7aA 504 2.10e+01 b.71.1.1,c.1.8.1 97192,97193 1wi5A 119 2.11e+01 1jiwI 106 2.11e+01 1smpI b.61.2.1 63078 1obdA 306 2.11e+01 d.143.1.1 86767 2fe7A 166 2.15e+01 1gjwA 637 2.21e+01 b.71.1.1,c.1.8.1 60582,60583 1ud9A 245 2.25e+01 d.131.1.2,d.131.1.2 107768,107769 1ucsA 64 2.28e+01 b.85.1.1 88466 1xu6A 80 2.30e+01 1o54A 277 2.38e+01 c.66.1.13 92482 1n9bA 265 2.42e+01 e.3.1.1 85463 2bh8A 101 2.42e+01 1euwA 152 2.46e+01 1dupA b.85.4.1 28349 1m93C 41 2.46e+01 1q0xH 221 2.48e+01 b.1.1.1,b.1.1.2 95517,95518 2gqrA 237 2.50e+01 2cb2A 318 2.51e+01 1r1qA 100 2.51e+01 d.93.1.1 104763 1gxuA 91 2.60e+01 d.58.10.1 76378 2b20A 403 2.64e+01 1vi6A 208 2.65e+01 c.23.15.1 100736 1q15A 503 2.67e+01 c.26.2.1,d.153.1.1 95538,95539 1x93A 55 2.68e+01 1a8y 367 2.70e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1vkiA 181 2.71e+01 d.116.1.1 108664 1jhdA 396 2.74e+01 b.122.1.3,c.26.1.5 66712,66713 1ecrA 309 2.76e+01 1ecrA e.2.1.1 42678 2trxA 108 2.78e+01 1thx c.47.1.1 32719 1nixA 34 2.81e+01 g.3.6.2 80541 1cmcA 104 2.82e+01 1cmbA a.43.1.5 17462 1rypL 212 2.83e+01 d.153.1.4 41880 2g2kA 170 2.86e+01 1f3uA 118 2.92e+01 1f3uA b.65.1.1 27521 2evbA 74 3.08e+01 2ct0A 74 3.08e+01 1qy6A 274 3.09e+01 b.47.1.1 96574 1kgcE 242 3.12e+01 b.1.1.1,b.1.1.2 77386,77387 1zdrA 164 3.19e+01 1u07A 90 3.20e+01 1jkeA 145 3.35e+01 c.110.1.1 66791 2cqeA 98 3.38e+01 1h6fA 193 3.39e+01 b.2.5.4 70901 1twiA 434 3.40e+01 b.49.2.3,c.1.6.1 107399,107400 1v8cA 168 3.48e+01 d.15.3.1,d.129.5.1 100495,100496 1jsdB 176 3.51e+01 h.3.1.1 63259 1o17A 345 3.53e+01 a.46.2.1,c.27.1.1 80765,80766 1c96A 753 3.59e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1ifrA 121 3.61e+01 b.1.16.1 71203 1kafA 108 3.66e+01 d.199.1.1 68372 1vlrA 350 3.73e+01 d.13.1.3,d.246.1.1 108860,108861 1vc3B 97 3.75e+01 1pkhA 204 3.77e+01 b.85.4.1 94832 1yukA 103 3.82e+01 1quqB 121 3.84e+01 1quqB b.40.4.3 25305 1idpA 172 3.85e+01 d.17.4.1 83685 1v8qA 85 3.87e+01 b.84.4.1 108428 1weoA 93 3.92e+01 1div 149 3.92e+01 1div d.99.1.1,d.100.1.1 40692,40693 2gpiA 91 3.98e+01 1owxA 121 3.99e+01 d.58.7.1 87494 1qy5A 269 4.02e+01 d.122.1.1 96573 1ty9A 222 4.03e+01 1e4fT 419 4.09e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1o7fA 469 4.10e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1y93A 159 4.18e+01 2ftbA 125 4.24e+01 1g38A 393 4.28e+01 2admA c.66.1.27 60235 1lkkA 105 4.42e+01 1lckA d.93.1.1 40412 1voqa 90 4.43e+01 1wmhB 86 4.46e+01 1l5pA 93 4.47e+01 d.15.4.1 73598 2cfaA 217 4.49e+01 2cx1A 187 4.52e+01 2dcyA 185 4.53e+01 1pbuA 162 4.63e+01 d.58.46.1 88030 1tbxA 99 4.63e+01 a.4.5.48 106748 1qzgA 187 4.67e+01 b.40.4.3 96643 1e0fI 57 4.68e+01 1e0fI g.3.15.2 44377 1v76A 96 4.77e+01 1widA 130 4.80e+01 1v3wA 173 4.81e+01 b.81.1.5 100291 1ct9A 553 4.82e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 3dfr 162 4.83e+01 3dfr c.71.1.1 34880 1wimA 94 4.84e+01 1vkbA 161 4.86e+01 d.269.1.1 108643 1puc 105 4.92e+01 1puc d.97.1.1 40675 3fruA 269 4.94e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1avqA 228 4.99e+01 1avqA c.52.1.13 33326 2f96A 224 5.15e+01 3eipA 84 5.16e+01 3eipA d.26.2.1 38434 2cs2A 134 5.23e+01 1ekgA 127 5.30e+01 1dlxA d.82.2.1 40021 1ehxA 94 5.34e+01 1ehxA b.1.18.13 21950 1vqoI 162 5.35e+01 2g58A 121 5.35e+01 1x3eA 165 5.36e+01 1apyB 141 5.39e+01 1apyB 2exnA 136 5.41e+01 2fcjA 119 5.43e+01 1yloA 348 5.45e+01 1osdA 72 5.49e+01 d.58.17.1 104022 1f39A 101 5.51e+01 1umuA b.87.1.1 28386 1jnrB 150 5.62e+01 d.58.1.5 66969 1p7gA 222 5.66e+01 a.2.11.1,d.44.1.1 94223,94224 1lhpA 312 5.68e+01 c.72.1.5 77960 1hg7A 66 5.69e+01 1msi b.85.1.1 28280 1bdo 80 5.71e+01 1bdo b.84.1.1 28214 1s96A 219 5.74e+01 c.37.1.1 98740 2brcA 214 5.77e+01 1sh8A 154 5.83e+01 d.38.1.5 105549 1uocA 289 5.89e+01 c.55.3.9 99686 1rypD 241 5.94e+01 1rypD d.153.1.4 41935 2atrA 138 5.97e+01 1x8vA 455 6.00e+01 1xqaA 113 6.04e+01 1zxfA 155 6.06e+01 2tgi 112 6.13e+01 2tgi g.17.1.2 44777 1wba 175 6.20e+01 1wba b.42.4.1 25591 1sg4A 260 6.23e+01 1i25A 37 6.27e+01 1i25A g.3.6.2 44115 1wb9A 800 6.27e+01 1w2fA 276 6.33e+01 d.143.1.3 109125 1zi8A 236 6.40e+01 1vemA 516 6.40e+01 1p0zA 131 6.43e+01 d.110.6.1 93882 1h09A 338 6.45e+01 b.109.1.1,c.1.8.8 83420,83421 1x75A 132 6.46e+01 1vd3A 217 6.47e+01 2bgcA 238 6.47e+01 1vqoC 246 6.55e+01 2fdiA 211 6.58e+01 1nfp 228 6.62e+01 1nfp c.1.16.2 29555 1usyA 275 6.64e+01 1r9fA 136 6.70e+01 d.255.1.1 97257 1floA 422 6.75e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1ogaE 252 6.77e+01 b.1.1.1,b.1.1.2 86992,86993 1uylA 236 6.84e+01 d.122.1.1 108147 1rutX 188 6.91e+01 1qx2A 76 6.99e+01 a.39.1.1 104622 1j5pA 253 7.06e+01 d.81.1.3,c.2.1.3 71577,83092 2fkbA 180 7.11e+01 1nlfA 279 7.13e+01 c.37.1.11 85850 1kgdA 180 7.16e+01 c.37.1.1 68582 2ch4A 320 7.18e+01 1z2wA 192 7.22e+01 1vetB 125 7.22e+01 d.110.7.1 108554 1wzvA 155 7.31e+01 1eg3A 261 7.36e+01 1eg3A a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 2bf5A 98 7.37e+01 1ghpA 258 7.37e+01 1btl e.3.1.1 60520 2bvfA 459 7.40e+01 1ywyA 74 7.46e+01 2fymA 431 7.50e+01 1xrkA 124 7.57e+01 2cx5A 158 7.64e+01 1auuA 55 7.68e+01 1auuA b.35.2.1 24769 1b34B 118 7.69e+01 1b34B b.38.1.1 24797 2gatA 66 7.79e+01 1gatA g.39.1.1 45102 2avtA 378 7.79e+01 1szoA 257 7.79e+01 c.14.1.3 106164 2f0aA 98 7.80e+01 1rhs 296 7.83e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1hl9A 449 8.00e+01 b.71.1.3,c.1.8.11 90650,90651 2gfgA 193 8.05e+01 1vqoY 241 8.09e+01 1vckA 115 8.12e+01 1o6sB 105 8.12e+01 b.1.6.1 81096 2bw2A 140 8.12e+01 1u24A 337 8.20e+01 1ojqA 212 8.31e+01 d.166.1.1 93146 1t6sA 162 8.32e+01 1zd0A 150 8.33e+01 1df7A 159 8.33e+01 3dfr c.71.1.1 34885 1qg3A 195 8.33e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1bf2 750 8.45e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1sjyA 159 8.56e+01 d.113.1.1 98900 1e0tA 470 8.58e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1hqsA 423 8.59e+01 1iso c.77.1.1 61154 1ppjI 78 8.60e+01 d.184.1.3 104265 2aw4R 103 8.61e+01 2cc3A 150 8.63e+01 1b06A 210 8.66e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1te0A 318 8.70e+01 1kutA 230 8.72e+01 d.143.1.1 73017 1ifc 132 8.76e+01 b.60.1.2 27173 1w2xA 758 8.78e+01 c.14.1.4,c.14.1.4 109134,109135 1us5A 314 8.85e+01 c.94.1.1 99856 1thx 115 8.88e+01 1thx c.47.1.1 32732 2bnuB 241 8.93e+01 1r1hA 696 8.95e+01 d.92.1.4 104756 1wpiA 133 8.96e+01 1ykhB 132 9.00e+01