# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o17A 345 7.84e-01 a.46.2.1,c.27.1.1 80765,80766 2f1kA 279 7.85e-01 1vemA 516 1.24e+00 2cb2A 318 1.83e+00 1kshA 186 2.28e+00 c.37.1.8 72914 1din 236 2.87e+00 1din c.69.1.9 34682 1zi8A 236 3.19e+00 1o7iA 119 5.44e+00 b.40.4.3 86642 1zbpA 273 6.32e+00 1ghpA 258 7.75e+00 1btl e.3.1.1 60520 1uw4A 91 9.51e+00 d.58.7.4 100071 1wjxA 122 9.94e+00 2cbuA 468 1.00e+01 1jlyA 304 1.22e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1q15A 503 1.25e+01 c.26.2.1,d.153.1.1 95538,95539 1q0eA 152 1.31e+01 b.1.8.1 95504 1csn 298 1.31e+01 1csn d.144.1.7 41664 1b35B 255 1.32e+01 1b35B b.121.4.1 23334 1wcgA 464 1.37e+01 1d8hA 311 1.42e+01 1d8iA d.63.1.1 39544 1wzvA 155 1.48e+01 1lv7A 257 1.55e+01 c.37.1.20 78232 1o50A 157 1.59e+01 d.37.1.1,d.37.1.1 92478,92479 1em2A 229 1.63e+01 1em2A d.129.3.2 41321 1e9pA 151 1.68e+01 1mfmA b.1.8.1 22215 1to4A 156 1.69e+01 b.1.8.1 107162 1uylA 236 1.72e+01 d.122.1.1 108147 1xs1A 193 1.74e+01 2ag4A 164 1.80e+01 1f35A 162 1.81e+01 1f35A b.94.1.1 59628 1mg7A 417 1.82e+01 d.14.1.6,d.58.26.6 84954,84955 1yvhA 329 1.91e+01 1k0wA 231 1.91e+01 c.74.1.1 77220 1pl4A 198 1.91e+01 a.2.11.1,d.44.1.1 94854,94855 2cnqA 306 2.02e+01 1g5bA 221 2.16e+01 1g5bA d.159.1.3 60261 2fsrA 195 2.31e+01 1iicA 422 2.32e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1rypD 241 2.33e+01 1rypD d.153.1.4 41935 2brcA 214 2.36e+01 1tzpA 255 2.62e+01 d.65.1.3 107520 2agyA 361 2.73e+01 1rlr 761 2.78e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 2d1eA 248 2.81e+01 2a5dA 175 2.82e+01 1bb8 71 2.97e+01 2bb8 d.10.1.1 37478 1n2sA 299 3.21e+01 c.2.1.2 79857 1vjeA 166 3.27e+01 d.185.1.2 100807 1ig5A 75 3.28e+01 4icb a.39.1.1 62363 1yyaA 250 3.35e+01 1o3yA 166 3.48e+01 c.37.1.8 86618 2trxA 108 3.67e+01 1thx c.47.1.1 32719 2fa8A 105 3.71e+01 1vizA 240 3.72e+01 c.1.4.1 100784 2b20A 403 3.85e+01 1f9zA 135 3.87e+01 1qipA d.32.1.1 38484 1z5zA 271 3.93e+01 1y80A 210 4.03e+01 1f3uA 118 4.09e+01 1f3uA b.65.1.1 27521 2gfaA 119 4.11e+01 1iq4A 179 4.11e+01 1iq4A d.77.1.1 62641 1gpr 162 4.12e+01 1gpr b.84.3.1 28267 1rypL 212 4.16e+01 d.153.1.4 41880 1hyhA 309 4.33e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1obdA 306 4.36e+01 d.143.1.1 86767 2aj6A 159 4.42e+01 1mml 265 4.54e+01 1mml e.8.1.2 43015 1xu6A 80 4.63e+01 1j55A 95 4.68e+01 a.39.1.2 77078 1puc 105 4.70e+01 1puc d.97.1.1 40675 2cx5A 158 4.76e+01 1zd9A 188 4.95e+01 1m22A 503 5.01e+01 c.117.1.1 78464 1xniA 118 5.05e+01 1zj6A 187 5.36e+01 1o4rA 108 5.45e+01 d.93.1.1 92469 2gnqA 336 5.46e+01 1mg4A 113 5.51e+01 d.15.11.1 84953 1o59A 355 5.72e+01 b.18.1.22,b.18.1.22 92495,92496 1w2fA 276 5.80e+01 d.143.1.3 109125 1f1gA 154 5.87e+01 b.1.8.1 76153 2ftbA 125 5.93e+01 1kveB 77 5.97e+01 1kveB 1crzA 403 6.04e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1lc5A 364 6.11e+01 c.67.1.1 73827 1ikpA 613 6.12e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1cojA 212 6.29e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1t0qC 86 6.32e+01 d.15.12.1 106222 1q3lA 69 6.57e+01 1pcfA 66 6.61e+01 1pcfA d.18.1.1 38142 1zhvA 134 6.73e+01 2awpA 198 6.76e+01 1r29A 127 6.78e+01 d.42.1.1 96856 1xahA 354 7.04e+01 1y93A 159 7.16e+01 1dbqA 289 7.17e+01 1qpzA c.93.1.1 35666 1zsxA 347 7.17e+01 1djtA 64 7.19e+01 1aho g.3.7.1 44132 1rypF 233 7.20e+01 1rypF d.153.1.4 41937 1qzgA 187 7.21e+01 b.40.4.3 96643 1exbA 332 7.23e+01 1qrqA c.1.7.1 28666 2anxA 146 7.58e+01 1zyiA 171 7.93e+01 2be1A 339 8.00e+01 1qmeA 702 8.01e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2cxaA 256 8.04e+01 1g2iA 166 8.22e+01 1g2iA c.23.16.2 31438 2cr4A 126 8.37e+01 2bkdN 134 8.39e+01 1t8hA 277 8.51e+01 d.194.1.2 106664 1rcqA 357 8.51e+01 b.49.2.2,c.1.6.1 104882,104883 2f57A 317 8.73e+01 2aegA 268 8.89e+01 2bw2A 140 8.94e+01 1q6zA 528 8.95e+01