# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vemA 516 6.73e-01 1kshA 186 8.59e-01 c.37.1.8 72914 2f1kA 279 1.24e+00 1din 236 1.83e+00 1din c.69.1.9 34682 2cb2A 318 2.04e+00 1zi8A 236 2.21e+00 1o17A 345 2.87e+00 a.46.2.1,c.27.1.1 80765,80766 1wjxA 122 4.21e+00 1o7iA 119 5.37e+00 b.40.4.3 86642 1oo0A 147 7.60e+00 d.232.1.1 87182 2agyA 361 8.16e+00 1yvhA 329 9.70e+00 1nzyA 269 9.89e+00 1nzyA c.14.1.3 30903 1jftA 340 1.11e+01 a.35.1.5,c.93.1.1 66652,66653 1uw4A 91 1.11e+01 d.58.7.4 100071 1dbqA 289 1.13e+01 1qpzA c.93.1.1 35666 2cbuA 468 1.36e+01 1jlyA 304 1.36e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1zd9A 188 1.47e+01 1azo 232 1.50e+01 1azo c.52.1.14 33329 1f6bA 198 1.53e+01 c.37.1.8 64986 2a5dA 175 1.55e+01 1q15A 503 1.75e+01 c.26.2.1,d.153.1.1 95538,95539 1iicA 422 1.78e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1rypD 241 1.88e+01 1rypD d.153.1.4 41935 1k0wA 231 1.91e+01 c.74.1.1 77220 1b35B 255 1.92e+01 1b35B b.121.4.1 23334 2fsrA 195 2.00e+01 1q0eA 152 2.09e+01 b.1.8.1 95504 1ig5A 75 2.15e+01 4icb a.39.1.1 62363 1ghpA 258 2.52e+01 1btl e.3.1.1 60520 1f9zA 135 2.66e+01 1qipA d.32.1.1 38484 1at0 145 2.69e+01 1at0 b.86.1.1 28374 1obdA 306 2.74e+01 d.143.1.1 86767 1pl4A 198 2.87e+01 a.2.11.1,d.44.1.1 94854,94855 1f3uA 118 2.88e+01 1f3uA b.65.1.1 27521 2trxA 108 2.89e+01 1thx c.47.1.1 32719 1m40A 263 2.91e+01 e.3.1.1 74437 1d8wA 426 2.92e+01 1de5A c.1.15.2 29394 2b20A 403 2.93e+01 1mg4A 113 2.93e+01 d.15.11.1 84953 2fm8A 135 3.08e+01 1zbpA 273 3.13e+01 1m22A 503 3.14e+01 c.117.1.1 78464 1iq4A 179 3.15e+01 1iq4A d.77.1.1 62641 1i3zA 103 3.23e+01 d.93.1.1 83667 1e9pA 151 3.23e+01 1mfmA b.1.8.1 22215 1q0xH 221 3.24e+01 b.1.1.1,b.1.1.2 95517,95518 1wzvA 155 3.26e+01 1o3yA 166 3.27e+01 c.37.1.8 86618 1g2iA 166 3.28e+01 1g2iA c.23.16.2 31438 1y80A 210 3.34e+01 1sqsA 242 3.34e+01 c.23.5.5 98968 2gfaA 119 3.36e+01 2b5iC 199 3.42e+01 1ifrA 121 3.74e+01 b.1.16.1 71203 2cx5A 158 3.82e+01 2fepA 289 3.85e+01 1f35A 162 3.87e+01 1f35A b.94.1.1 59628 1bb8 71 3.93e+01 2bb8 d.10.1.1 37478 1csn 298 3.96e+01 1csn d.144.1.7 41664 1lv7A 257 4.03e+01 c.37.1.20 78232 1nlfA 279 4.08e+01 c.37.1.11 85850 1krs 120 4.08e+01 1krs b.40.4.1 25256 1to4A 156 4.15e+01 b.1.8.1 107162 1o7fA 469 4.19e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2cnqA 306 4.21e+01 1kveB 77 4.34e+01 1kveB 1ejxC 567 4.38e+01 b.92.1.1,c.1.9.2 83184,83185 1o59A 355 4.41e+01 b.18.1.22,b.18.1.22 92495,92496 1uylA 236 4.45e+01 d.122.1.1 108147 1wcgA 464 4.75e+01 2dcyA 185 4.78e+01 1n2sA 299 4.87e+01 c.2.1.2 79857 1mg7A 417 4.97e+01 d.14.1.6,d.58.26.6 84954,84955 1f60A 458 5.08e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1ir6A 424 5.13e+01 c.107.1.2 71342 2acaA 189 5.16e+01 1zm8A 259 5.26e+01 1g5bA 221 5.44e+01 1g5bA d.159.1.3 60261 1o4rA 108 5.50e+01 d.93.1.1 92469 1k92A 455 5.52e+01 c.26.2.1,d.210.1.1 68325,68326 2gwnA 452 5.57e+01 1gpr 162 5.58e+01 1gpr b.84.3.1 28267 1qfxA 460 5.63e+01 1qfxA c.60.1.2 33994 2cr4A 126 5.65e+01 1t8hA 277 5.72e+01 d.194.1.2 106664 1jmcA 246 5.73e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1w2fA 276 5.82e+01 d.143.1.3 109125 1xniA 118 5.82e+01 1qzgA 187 6.01e+01 b.40.4.3 96643 1em2A 229 6.18e+01 1em2A d.129.3.2 41321 1r7mA 235 6.25e+01 1yrbA 262 6.34e+01 1voqa 90 6.44e+01 2ey4C 82 6.47e+01 2aegA 268 6.51e+01 2c1iA 431 6.57e+01 1e44B 96 6.61e+01 1e44B b.101.1.1 59220 1rypJ 204 6.62e+01 d.153.1.4 41878 1u24A 337 6.79e+01 1mr3F 181 6.83e+01 c.37.1.8 79422 3fib 249 6.91e+01 3fib d.171.1.1 42455 1xs1A 193 7.05e+01 1pcfA 66 7.08e+01 1pcfA d.18.1.1 38142 1th0A 226 7.19e+01 d.3.1.7 106903 1xk5A 204 7.21e+01 1crzA 403 7.22e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1dkuA 317 7.23e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1j55A 95 7.24e+01 a.39.1.2 77078 1wmhA 89 7.35e+01 2ftbA 125 7.43e+01 1p4oA 322 7.61e+01 d.144.1.7 87775 1zyiA 171 7.82e+01 1a8y 367 7.86e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1sjiA 350 7.93e+01 2aieP 203 7.96e+01 1i4yA 114 7.99e+01 2mhr a.24.4.1 61738 1cojA 212 8.01e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1r9fA 136 8.01e+01 d.255.1.1 97257 1ywnA 316 8.11e+01 1wi0A 113 8.12e+01 1jyoA 130 8.17e+01 d.198.1.1 67483 2brcA 214 8.17e+01 1qy6A 274 8.28e+01 b.47.1.1 96574 2agaA 190 8.28e+01 1wl8A 189 8.32e+01 1k7cA 233 8.35e+01 c.23.10.4 68267 1fdr 248 8.38e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1w9yA 319 8.39e+01 1knwA 425 8.49e+01 b.49.2.3,c.1.6.1 90969,90970 2fa8A 105 8.49e+01 1nmoA 247 8.51e+01 c.135.1.1 91980 1y9qA 192 8.53e+01 1twiA 434 8.54e+01 b.49.2.3,c.1.6.1 107399,107400 1mml 265 8.81e+01 1mml e.8.1.2 43015