# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1din 236 3.46e-01 1din c.69.1.9 34682 1zi8A 236 4.22e-01 1kshA 186 5.10e-01 c.37.1.8 72914 1q15A 503 1.73e+00 c.26.2.1,d.153.1.1 95538,95539 1vemA 516 2.49e+00 1o17A 345 3.34e+00 a.46.2.1,c.27.1.1 80765,80766 1qfxA 460 3.78e+00 1qfxA c.60.1.2 33994 1tfzA 424 4.12e+00 d.32.1.3,d.32.1.3 106886,106887 1jlyA 304 4.37e+00 1jlyA b.42.3.1,b.42.3.1 25587,25588 1bb8 71 6.55e+00 2bb8 d.10.1.1 37478 2f1kA 279 6.62e+00 2cb2A 318 7.60e+00 1sqsA 242 7.94e+00 c.23.5.5 98968 1nlfA 279 8.24e+00 c.37.1.11 85850 1xcbA 211 8.51e+00 a.4.5.38,c.2.1.12 109552,109553 1jmcA 246 8.80e+00 1jmcA b.40.4.3,b.40.4.3 25300,25301 1z8gA 372 9.51e+00 2agyA 361 9.92e+00 2cbuA 468 1.05e+01 1b35B 255 1.32e+01 1b35B b.121.4.1 23334 1yyaA 250 1.32e+01 1nnsA 326 1.33e+01 c.88.1.1 85910 1voqa 90 1.34e+01 2ew0A 192 1.41e+01 2chnA 716 1.44e+01 1yvhA 329 1.46e+01 1m22A 503 1.53e+01 c.117.1.1 78464 1o50A 157 1.61e+01 d.37.1.1,d.37.1.1 92478,92479 1f6bA 198 1.65e+01 c.37.1.8 64986 1ig5A 75 1.84e+01 4icb a.39.1.1 62363 1qzgA 187 1.96e+01 b.40.4.3 96643 1bf5A 545 1.98e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1t5bA 201 2.04e+01 c.23.5.3 106433 1wjxA 122 2.06e+01 3fib 249 2.11e+01 3fib d.171.1.1 42455 1uw4A 91 2.14e+01 d.58.7.4 100071 1f9zA 135 2.15e+01 1qipA d.32.1.1 38484 1nmoA 247 2.16e+01 c.135.1.1 91980 1awd 94 2.20e+01 1awd d.15.4.1 37673 2bh8A 101 2.22e+01 8dfr 189 2.35e+01 1aoeA c.71.1.1 34895 1rcqA 357 2.45e+01 b.49.2.2,c.1.6.1 104882,104883 1zd9A 188 2.51e+01 2a5dA 175 2.52e+01 1i3zA 103 2.72e+01 d.93.1.1 83667 1q0xH 221 2.72e+01 b.1.1.1,b.1.1.2 95517,95518 1t2jA 116 2.73e+01 1v72A 356 2.78e+01 1us5A 314 2.87e+01 c.94.1.1 99856 1jr7A 311 2.92e+01 b.82.2.3 63255 1t3qB 788 2.95e+01 d.41.1.1,d.133.1.1 106369,106370 1uv4A 293 3.04e+01 1r7lA 110 3.04e+01 d.277.1.1 104837 1exbA 332 3.08e+01 1qrqA c.1.7.1 28666 1o4rA 108 3.29e+01 d.93.1.1 92469 2choA 716 3.34e+01 1seiA 130 3.43e+01 1seiA d.140.1.1 41463 1gycA 499 3.48e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1xahA 354 3.50e+01 1r1qA 100 3.55e+01 d.93.1.1 104763 1e9pA 151 3.56e+01 1mfmA b.1.8.1 22215 1q0eA 152 3.60e+01 b.1.8.1 95504 1zy4A 303 3.62e+01 1si6X 282 3.63e+01 1em2A 229 3.65e+01 1em2A d.129.3.2 41321 1zt2B 212 3.70e+01 1r9fA 136 3.73e+01 d.255.1.1 97257 1el6A 219 3.76e+01 1el6B d.182.1.1 42606 1xrkA 124 3.79e+01 2aegA 268 3.88e+01 2gdzA 267 3.88e+01 1r8sA 164 3.93e+01 c.37.1.8 97247 2g8mA 264 3.98e+01 1rypL 212 3.99e+01 d.153.1.4 41880 1i5nA 146 4.02e+01 1i5nA a.24.10.3 61805 1nar 290 4.06e+01 1nar c.1.8.5 28988 2ag4A 164 4.10e+01 1sddA 306 4.20e+01 b.6.1.3,b.6.1.3 105431,105432 1zyiA 171 4.24e+01 1y6uA 70 4.27e+01 1wqaA 455 4.28e+01 1qqqA 264 4.28e+01 1bkpA d.117.1.1 40931 1cipA 353 4.30e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1ezwA 349 4.32e+01 1ezwA c.1.16.3 29558 1t92A 116 4.34e+01 2fcjA 119 4.49e+01 1zsxA 347 4.61e+01 1reqA 727 4.61e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1zx8A 136 4.73e+01 1x0vA 354 4.76e+01 2f9dA 125 4.81e+01 1pcfA 66 4.85e+01 1pcfA d.18.1.1 38142 1v4pA 157 4.85e+01 1ds1A 324 4.88e+01 1drtA b.82.2.2 28127 1mr3F 181 4.89e+01 c.37.1.8 79422 1yc9A 442 4.91e+01 1xniA 118 4.93e+01 1gpr 162 4.99e+01 1gpr b.84.3.1 28267 2g8oA 264 5.10e+01 1wzvA 155 5.13e+01 1hz6A 72 5.17e+01 2ptl d.15.7.1 61429 2gu3A 136 5.21e+01 1tw9A 206 5.27e+01 a.45.1.1,c.47.1.5 107381,107382 2b20A 403 5.29e+01 2fp7B 172 5.35e+01 2cxxA 190 5.37e+01 1j09A 468 5.38e+01 a.97.1.1,c.26.1.1 77025,77026 1mo9A 523 5.43e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1apyA 162 5.48e+01 1apyA d.153.1.5 42004 2go8A 122 5.49e+01 1g66A 207 5.49e+01 1bs9 c.69.1.30 31329 1r29A 127 5.57e+01 d.42.1.1 96856 1ti5A 46 5.63e+01 1zfuA 40 5.63e+01 1ebfA 358 5.70e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 2calA 154 5.71e+01 1nqkA 381 5.81e+01 c.1.16.4 92050 1zd0A 150 5.85e+01 1a2zA 220 5.94e+01 1a2zA c.56.4.1 33794 1a4pA 96 6.01e+01 1b4cA a.39.1.2 17176 1t2bA 397 6.03e+01 1rypF 233 6.17e+01 1rypF d.153.1.4 41937 1svsA 353 6.19e+01 c.37.1.8 106051 1ycdA 243 6.26e+01 2cn3A 737 6.27e+01 1y80A 210 6.30e+01 1ois 223 6.33e+01 1a36A e.15.1.1 43267 1oo0A 147 6.33e+01 d.232.1.1 87182 1ntvA 152 6.36e+01 b.55.1.2 86168 2a7uA 22 6.40e+01 4pgaA 337 6.49e+01 4pgaA c.88.1.1 35565 1sgoA 139 6.54e+01 d.82.3.1 98857 1ifrA 121 6.70e+01 b.1.16.1 71203 2sak 121 6.73e+01 2sak d.15.5.1 37711 2bh1A 250 6.81e+01 1o7iA 119 6.84e+01 b.40.4.3 86642 1kolA 398 6.84e+01 b.35.1.2,c.2.1.1 77474,77475 2gnqA 336 6.87e+01 1oo2A 119 6.93e+01 b.3.4.1 93372 1fy7A 278 7.05e+01 1fy7A d.108.1.1 40817 2ap1A 327 7.07e+01 1vprA 374 7.20e+01 1j3bA 529 7.32e+01 c.91.1.1,c.109.1.1 77071,77072 1g8sA 230 7.32e+01 c.66.1.3 90507 2gqrA 237 7.41e+01 2bsjA 133 7.42e+01 1q33A 292 7.44e+01 d.113.1.1 95657 1wpnA 188 7.46e+01 2d7nA 93 7.46e+01 2gauA 232 7.69e+01 1kveB 77 7.70e+01 1kveB 2b5iC 199 7.70e+01 1v5iB 76 7.78e+01 1x75A 132 7.85e+01 2gtrA 261 7.87e+01 1to4A 156 7.87e+01 b.1.8.1 107162 2fz4A 237 7.92e+01 1y7wA 291 7.94e+01 1n2sA 299 7.94e+01 c.2.1.2 79857 1lfc 25 7.97e+01 j.3.1.5 46074 1mr7A 209 8.01e+01 b.81.1.3 91430 2fa8A 105 8.04e+01 2gm3A 175 8.12e+01 1gq6A 313 8.16e+01 c.42.1.1 70341 1upvA 257 8.21e+01 2bhoA 130 8.24e+01 1r6jA 82 8.27e+01 b.36.1.1 97151 2evrA 246 8.28e+01 2cx5A 158 8.33e+01 1i0dA 332 8.34e+01 1pscA c.1.9.3 61487 1x38A 602 8.36e+01 1w2wB 191 8.40e+01 2d48A 129 8.42e+01 1hziA 129 8.60e+01 1rcb a.26.1.2 61449 2dg5B 190 8.73e+01 1kqfC 217 8.78e+01 f.21.1.1 72874 1sseB 86 8.79e+01 1zarA 282 8.80e+01 1i9zA 347 8.85e+01 1i9yA d.151.1.2 62102 1d8wA 426 8.94e+01 1de5A c.1.15.2 29394