# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1din 236 1.91e-01 1din c.69.1.9 34682 1zi8A 236 2.64e-01 1vemA 516 3.99e-01 2cb2A 318 4.67e-01 1yyaA 250 5.89e-01 1kshA 186 6.96e-01 c.37.1.8 72914 1o17A 345 1.08e+00 a.46.2.1,c.27.1.1 80765,80766 1o50A 157 1.33e+00 d.37.1.1,d.37.1.1 92478,92479 1voqa 90 1.81e+00 1b35B 255 2.66e+00 1b35B b.121.4.1 23334 1nmoA 247 2.90e+00 c.135.1.1 91980 1q15A 503 3.35e+00 c.26.2.1,d.153.1.1 95538,95539 1neiA 60 4.70e+00 d.253.1.1 91843 1jr7A 311 4.90e+00 b.82.2.3 63255 2bkdN 134 5.19e+00 2cbuA 468 5.28e+00 1oo0A 147 5.36e+00 d.232.1.1 87182 1txgA 335 5.45e+00 1bb8 71 5.68e+00 2bb8 d.10.1.1 37478 1ig5A 75 6.14e+00 4icb a.39.1.1 62363 1wzvA 155 7.32e+00 1sqsA 242 7.98e+00 c.23.5.5 98968 1bf5A 545 8.02e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1zbpA 273 8.20e+00 1v02A 565 8.25e+00 c.1.8.4 108194 2f9dA 125 8.48e+00 1jlyA 304 9.18e+00 1jlyA b.42.3.1,b.42.3.1 25587,25588 1mo9A 523 9.54e+00 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1jmcA 246 9.84e+00 1jmcA b.40.4.3,b.40.4.3 25300,25301 2brcA 214 1.03e+01 1mr7A 209 1.05e+01 b.81.1.3 91430 1uw4A 91 1.09e+01 d.58.7.4 100071 2agyA 361 1.10e+01 1sfxA 109 1.10e+01 a.4.5.50 105505 1nlfA 279 1.14e+01 c.37.1.11 85850 1z5zA 271 1.18e+01 2sak 121 1.23e+01 2sak d.15.5.1 37711 1wjxA 122 1.26e+01 1qfxA 460 1.27e+01 1qfxA c.60.1.2 33994 1xahA 354 1.40e+01 1t2jA 116 1.41e+01 1j55A 95 1.43e+01 a.39.1.2 77078 2fa8A 105 1.50e+01 1xrkA 124 1.51e+01 2a5dA 175 1.51e+01 2chnA 716 1.52e+01 1kolA 398 1.54e+01 b.35.1.2,c.2.1.1 77474,77475 2gu3A 136 1.54e+01 1f9zA 135 1.56e+01 1qipA d.32.1.1 38484 2cfaA 217 1.56e+01 1pcfA 66 1.70e+01 1pcfA d.18.1.1 38142 2choA 716 1.72e+01 2cn3A 737 1.80e+01 1a4pA 96 1.83e+01 1b4cA a.39.1.2 17176 2aegA 268 1.89e+01 1k20A 310 1.90e+01 c.107.1.1 68027 2dcyA 185 1.92e+01 1zt2B 212 1.92e+01 2ag4A 164 1.95e+01 1r7lA 110 1.95e+01 d.277.1.1 104837 1xniA 118 1.97e+01 2fm8A 135 1.99e+01 1y80A 210 2.01e+01 1fj2A 232 2.02e+01 1auoA c.69.1.14 34720 1xcbA 211 2.02e+01 a.4.5.38,c.2.1.12 109552,109553 1csn 298 2.12e+01 1csn d.144.1.7 41664 1kveB 77 2.16e+01 1kveB 2gtrA 261 2.16e+01 1ikpA 613 2.17e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2gfaA 119 2.19e+01 4pgaA 337 2.24e+01 4pgaA c.88.1.1 35565 1weoA 93 2.29e+01 1g2iA 166 2.30e+01 1g2iA c.23.16.2 31438 2bh1A 250 2.31e+01 1p4kA 295 2.33e+01 d.153.1.5 87772 1qzgA 187 2.44e+01 b.40.4.3 96643 1tfzA 424 2.45e+01 d.32.1.3,d.32.1.3 106886,106887 1zd9A 188 2.46e+01 1fy7A 278 2.48e+01 1fy7A d.108.1.1 40817 1i3zA 103 2.66e+01 d.93.1.1 83667 2ew0A 192 2.66e+01 1rypL 212 2.72e+01 d.153.1.4 41880 1r9fA 136 2.73e+01 d.255.1.1 97257 1mml 265 2.77e+01 1mml e.8.1.2 43015 1vizA 240 2.78e+01 c.1.4.1 100784 1o5xA 248 2.78e+01 c.1.1.1 92528 2fd6U 276 2.79e+01 1yc9A 442 2.82e+01 2gaiA 633 2.82e+01 2bj7A 138 2.85e+01 1rypF 233 2.91e+01 1rypF d.153.1.4 41937 1zkpA 268 2.92e+01 1zfuA 40 2.93e+01 1whzA 70 2.99e+01 1uv4A 293 3.02e+01 1i0dA 332 3.03e+01 1pscA c.1.9.3 61487 2c1iA 431 3.06e+01 1r29A 127 3.11e+01 d.42.1.1 96856 2d1eA 248 3.15e+01 1ir6A 424 3.16e+01 c.107.1.2 71342 1o7iA 119 3.21e+01 b.40.4.3 86642 1flcA 432 3.25e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1qreA 247 3.25e+01 1qreA b.81.1.5 28066 1v72A 356 3.27e+01 1mkfA 382 3.28e+01 b.116.1.1 79232 1x75A 132 3.35e+01 2cxxA 190 3.40e+01 2f1kA 279 3.44e+01 2bmwA 304 3.48e+01 1cipA 353 3.48e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 2bh8A 101 3.51e+01 1zc6A 305 3.52e+01 2bwvA 440 3.61e+01 1g31A 111 3.61e+01 1g31A b.35.1.1 24656 1rqwA 207 3.77e+01 b.25.1.1 97781 1q5hA 147 3.77e+01 b.85.4.1 95893 1seiA 130 3.81e+01 1seiA d.140.1.1 41463 1wdyA 285 3.84e+01 2fcjA 119 3.85e+01 1upvA 257 3.96e+01 1ykhB 132 4.04e+01 2acaA 189 4.06e+01 1k1aA 241 4.07e+01 d.211.1.1 67992 1nar 290 4.15e+01 1nar c.1.8.5 28988 1w9yA 319 4.16e+01 1g38A 393 4.16e+01 2admA c.66.1.27 60235 1n2sA 299 4.21e+01 c.2.1.2 79857 1o3yA 166 4.24e+01 c.37.1.8 86618 2ftbA 125 4.25e+01 1rypI 222 4.27e+01 d.153.1.4 41877 1x54A 434 4.29e+01 1mwwA 128 4.36e+01 d.80.1.4 91483 1t3qB 788 4.43e+01 d.41.1.1,d.133.1.1 106369,106370 1jltA 122 4.47e+01 a.133.1.2 66867 2b7eA 59 4.49e+01 1suuA 312 4.62e+01 b.68.10.1 99006 1igqA 62 4.68e+01 b.34.1.3 66130 1z4eA 153 4.70e+01 1svsA 353 4.70e+01 c.37.1.8 106051 1exbA 332 4.74e+01 1qrqA c.1.7.1 28666 1rcqA 357 4.75e+01 b.49.2.2,c.1.6.1 104882,104883 1xypA 190 4.82e+01 1axkA b.29.1.11 24327 2cz1A 206 4.84e+01 1kqpA 271 4.89e+01 c.26.2.1 72883 2h03A 291 4.92e+01 1ogiA 303 4.92e+01 b.43.4.2,c.25.1.1 92914,92915 1d8wA 426 4.95e+01 1de5A c.1.15.2 29394 1wp5A 323 4.96e+01 2evrA 246 4.99e+01 1x0vA 354 5.03e+01 1cojA 212 5.05e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1zsxA 347 5.05e+01 2ey4C 82 5.06e+01 1azo 232 5.06e+01 1azo c.52.1.14 33329 1jykA 254 5.10e+01 c.68.1.13 67458 1v5iB 76 5.14e+01 1yfnA 118 5.19e+01 1twfC 318 5.19e+01 1uzvA 114 5.19e+01 1uwsA 489 5.28e+01 c.1.8.4 108073 1izcA 339 5.28e+01 c.1.12.5 83838 2f9zC 159 5.31e+01 1gpr 162 5.37e+01 1gpr b.84.3.1 28267 1kmoA 774 5.37e+01 f.4.3.3 72753 1e0fI 57 5.38e+01 1e0fI g.3.15.2 44377 1eiwA 111 5.40e+01 1eiwA c.23.3.1 31130 1wpiA 133 5.41e+01 2pgd 482 5.43e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 2bsjA 133 5.44e+01 1g5bA 221 5.53e+01 1g5bA d.159.1.3 60261 1zm8A 259 5.61e+01 1t2bA 397 5.64e+01 2bkyA 97 5.79e+01 2btvA 901 5.82e+01 2btvA e.28.1.1 43376 1mg7A 417 5.90e+01 d.14.1.6,d.58.26.6 84954,84955 1v66A 65 6.04e+01 1t1gA 364 6.13e+01 c.41.1.2 106246 2f57A 317 6.18e+01 1i5nA 146 6.19e+01 1i5nA a.24.10.3 61805 1nw1A 429 6.31e+01 d.144.1.8 86286 2fsrA 195 6.42e+01 2basA 431 6.42e+01 1vqoS 85 6.43e+01 2fz4A 237 6.47e+01 1krs 120 6.49e+01 1krs b.40.4.1 25256 1z8gA 372 6.49e+01 1osdA 72 6.49e+01 d.58.17.1 104022 1sg7A 96 6.52e+01 1qcsA 211 6.62e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1lc5A 364 6.62e+01 c.67.1.1 73827 2b69A 343 6.64e+01 1htwA 158 6.72e+01 c.37.1.18 71083 1pv0A 46 6.80e+01 a.2.12.1 95141 1f32A 149 6.81e+01 1f32A d.62.1.1 39539 1lv7A 257 6.83e+01 c.37.1.20 78232 1f6bA 198 6.88e+01 c.37.1.8 64986 1ehs 48 6.90e+01 1ehs g.2.1.1 43998 1vjeA 166 6.91e+01 d.185.1.2 100807 2fdiA 211 6.98e+01 1ycdA 243 7.01e+01 1m1sA 116 7.11e+01 b.1.11.2 84747 1pl4A 198 7.11e+01 a.2.11.1,d.44.1.1 94854,94855 2asbA 251 7.14e+01 1zl0A 311 7.16e+01 1wwzA 159 7.16e+01 1rlzA 369 7.17e+01 c.31.1.1 104989 1m22A 503 7.18e+01 c.117.1.1 78464 1r8sA 164 7.26e+01 c.37.1.8 97247 1jb0D 138 7.27e+01 1jb0D d.187.1.1 62823 1n71A 180 7.28e+01 d.108.1.1 85370 1wmmA 145 7.30e+01 1rrmA 386 7.35e+01 e.22.1.2 105081 1whsB 153 7.37e+01 1whtB 1k55A 246 7.37e+01 e.3.1.1 68156 1wyxA 69 7.39e+01 1jfzA 154 7.42e+01 a.149.1.1 66655 1wnaA 131 7.44e+01 1at0 145 7.47e+01 1at0 b.86.1.1 28374 1ywnA 316 7.50e+01 2f5yA 91 7.53e+01 1sf8A 126 7.58e+01 d.271.1.1 105472 1q3lA 69 7.61e+01 1sseB 86 7.62e+01 1tzyA 129 7.64e+01 a.22.1.1 107530 1iicA 422 7.77e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1y14B 171 7.78e+01 2fp7B 172 7.80e+01 1v93A 296 7.83e+01 c.1.23.1 100532 1zhvA 134 7.87e+01 1lfc 25 7.92e+01 j.3.1.5 46074 1r6jA 82 7.95e+01 b.36.1.1 97151 1oh0A 131 8.01e+01 d.17.4.3 87004 2bvcA 486 8.03e+01 1fqjC 42 8.05e+01 1fqjC j.51.1.1 46332 1y4lA 121 8.08e+01 1mtzA 293 8.11e+01 c.69.1.7 79467 1dabA 539 8.20e+01 1dabA b.80.1.7 28049 1xs1A 193 8.28e+01 1awd 94 8.32e+01 1awd d.15.4.1 37673 1uylA 236 8.35e+01 d.122.1.1 108147 2bkkA 264 8.36e+01 2gqrA 237 8.36e+01 2go8A 122 8.48e+01 1p0fA 373 8.48e+01 b.35.1.2,c.2.1.1 87642,87643 1zx8A 136 8.49e+01 1nz0A 118 8.53e+01 d.14.1.2 86433 1s21A 206 8.81e+01 d.166.1.4 105222 2ervA 150 8.83e+01 1juhA 350 8.83e+01 b.82.1.5 71884 2cx5A 158 8.86e+01 1zbxB 141 8.88e+01 1q0xH 221 8.88e+01 b.1.1.1,b.1.1.2 95517,95518 1sgoA 139 8.91e+01 d.82.3.1 98857 1xqwA 293 8.96e+01 1kutA 230 8.97e+01 d.143.1.1 73017 1j1tA 233 9.00e+01 b.29.1.18 90771