# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vemA 516 1.45e+00 1ykhB 132 2.61e+00 1dszB 85 4.00e+00 2nllB g.39.1.2 45108 1xcbA 211 4.88e+00 a.4.5.38,c.2.1.12 109552,109553 1yewC 289 7.09e+00 1rfeA 162 7.49e+00 2ch8A 201 7.73e+00 1a4pA 96 7.77e+00 1b4cA a.39.1.2 17176 2ew0A 192 8.23e+00 1wbiA 129 8.69e+00 1y6uA 70 8.99e+00 2gu3A 136 1.12e+01 1oyjA 231 1.16e+01 a.45.1.1,c.47.1.5 87597,87598 1ig5A 75 1.19e+01 4icb a.39.1.1 62363 2btiA 63 1.24e+01 1zy4A 303 1.41e+01 2bh8A 101 1.76e+01 1g5bA 221 1.78e+01 1g5bA d.159.1.3 60261 1umqA 81 1.90e+01 a.4.1.12 99625 1lfc 25 1.94e+01 j.3.1.5 46074 1t3qB 788 2.00e+01 d.41.1.1,d.133.1.1 106369,106370 1p65A 73 2.01e+01 d.254.1.1 94156 1vkuA 100 2.05e+01 a.28.1.1 108690 1seiA 130 2.12e+01 1seiA d.140.1.1 41463 1sh0A 510 2.12e+01 e.8.1.4 98876 1syxB 86 2.28e+01 3bamA 213 2.38e+01 1bam c.52.1.3 33288 2gfaA 119 2.42e+01 2ezh 75 2.45e+01 2ezh a.4.1.2 16029 1w9yA 319 2.46e+01 2aj6A 159 2.59e+01 1yc9A 442 2.71e+01 1dd9A 338 2.81e+01 1dd9A e.13.1.1 43254 1t2bA 397 2.87e+01 1x6iA 91 3.20e+01 2bkdN 134 3.22e+01 1uheA 97 3.26e+01 1nlfA 279 3.48e+01 c.37.1.11 85850 1j55A 95 3.51e+01 a.39.1.2 77078 2ar0A 541 3.57e+01 2ao9A 155 3.59e+01 1v58A 241 3.61e+01 c.47.1.9,d.17.3.1 108371,108372 1mg4A 113 3.63e+01 d.15.11.1 84953 1ny4A 82 3.67e+01 b.40.4.5 92316 1ucsA 64 3.79e+01 b.85.1.1 88466 1jiwI 106 3.88e+01 1smpI b.61.2.1 63078 1v4pA 157 3.91e+01 1puc 105 3.95e+01 1puc d.97.1.1 40675 1oo2A 119 3.96e+01 b.3.4.1 93372 1je5A 206 4.02e+01 1je5A b.40.4.7 62909 1mrzA 293 4.21e+01 b.43.5.1,c.26.1.3 91452,91453 2d00A 109 4.33e+01 2bsjA 133 4.45e+01 1jb0D 138 4.54e+01 1jb0D d.187.1.1 62823 1vp7A 100 4.56e+01 1q5hA 147 4.59e+01 b.85.4.1 95893 1h1yA 228 4.65e+01 c.1.2.2 76506 2avyM 117 4.68e+01 1g8iA 190 4.75e+01 1rec a.39.1.5 60363 1cczA 171 4.95e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1at0 145 5.13e+01 1at0 b.86.1.1 28374 2ct7A 86 5.17e+01 1m3yA 413 5.62e+01 b.121.2.3,b.121.2.3 78579,78580 3fapB 94 5.63e+01 1nsgB a.24.7.1 16612 2conA 79 5.68e+01 1sknP 92 5.71e+01 1sknP a.37.1.1 17127 1xo1A 291 5.84e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1vqoI 162 5.93e+01 1ijxA 127 5.99e+01 1ijxA a.141.1.1 62511 1ofcX 304 6.25e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1sfxA 109 6.40e+01 a.4.5.50 105505 2aaoA 166 6.48e+01 1pvaA 110 6.52e+01 1a75A a.39.1.4 17207 1cixA 44 6.60e+01 g.3.6.2 70066 2dbbA 151 6.63e+01 2g1uA 155 6.71e+01 1bg1A 722 6.82e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1rcqA 357 6.90e+01 b.49.2.2,c.1.6.1 104882,104883 2fulA 178 7.26e+01 1gl2A 65 7.46e+01 h.1.15.1 65278 1sddA 306 7.47e+01 b.6.1.3,b.6.1.3 105431,105432 1usuB 170 7.49e+01 d.83.2.1 99886 2fc7A 82 7.55e+01 1pzlA 237 7.56e+01 a.123.1.1 104393 2ag4A 164 7.60e+01 1jfzA 154 7.60e+01 a.149.1.1 66655 1wjpA 107 7.70e+01 2fi9A 128 7.76e+01 2cb2A 318 7.95e+01 1jkxA 212 8.06e+01 c.65.1.1 66813 1yvhA 329 8.13e+01 1s5pA 235 8.14e+01 c.31.1.5 98569 1t5bA 201 8.27e+01 c.23.5.3 106433 1wzvA 155 8.28e+01 1jlyA 304 8.29e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1hw7A 255 8.32e+01 1i7fA d.193.1.1 61297 1pz1A 333 8.56e+01 c.1.7.1 95390 1cpt 412 8.62e+01 1cpt a.104.1.1 18968 1e0fI 57 8.62e+01 1e0fI g.3.15.2 44377 2c0nA 203 8.72e+01 1v32A 101 8.74e+01 a.42.1.1 100277 1tzyA 129 8.74e+01 a.22.1.1 107530 2gb7A 305 8.96e+01