# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1itcA 516 4.10e-01 b.3.1.1,c.1.8.1 83705,83706 1vemA 516 4.78e-01 2f1kA 279 5.56e-01 1yrvA 169 1.79e+00 1j1hA 144 1.80e+00 b.111.1.1 77056 1kshA 186 1.97e+00 c.37.1.8 72914 1w3jA 468 3.18e+00 c.1.8.4 109156 1o17A 345 3.31e+00 a.46.2.1,c.27.1.1 80765,80766 1din 236 4.22e+00 1din c.69.1.9 34682 1wjxA 122 5.02e+00 1zi8A 236 5.11e+00 1o50A 157 5.37e+00 d.37.1.1,d.37.1.1 92478,92479 2cb2A 318 6.72e+00 1lv7A 257 6.84e+00 c.37.1.20 78232 2cbuA 468 7.23e+00 1uw4A 91 8.80e+00 d.58.7.4 100071 1wzvA 155 9.13e+00 1q15A 503 1.06e+01 c.26.2.1,d.153.1.1 95538,95539 1csn 298 1.09e+01 1csn d.144.1.7 41664 1b35B 255 1.26e+01 1b35B b.121.4.1 23334 1n3gA 113 1.28e+01 d.204.1.1 79962 1zbpA 273 1.39e+01 1o7iA 119 1.40e+01 b.40.4.3 86642 1rlr 761 1.40e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1ghpA 258 1.41e+01 1btl e.3.1.1 60520 4icb 76 1.42e+01 4icb a.39.1.1 17145 1jlyA 304 1.46e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 2cblA 305 1.54e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1xs1A 193 1.58e+01 2ag9A 164 1.60e+01 1yvhA 329 1.61e+01 1hdmA 201 1.67e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1wcgA 464 1.75e+01 1bb8 71 1.93e+01 2bb8 d.10.1.1 37478 1q0eA 152 2.03e+01 b.1.8.1 95504 1qvbA 481 2.08e+01 1qvbA c.1.8.4 28983 1cbjA 151 2.21e+01 1mfmA b.1.8.1 22213 1voqa 90 2.25e+01 1y1uA 585 2.31e+01 1uurA 473 2.32e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1iicA 422 2.34e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1sqsA 242 2.46e+01 c.23.5.5 98968 2a5dA 175 2.47e+01 1k0sA 151 2.47e+01 b.40.7.1 67969 1to4A 156 2.54e+01 b.1.8.1 107162 1em2A 229 2.63e+01 1em2A d.129.3.2 41321 1d8hA 311 2.65e+01 1d8iA d.63.1.1 39544 1e9pA 151 2.69e+01 1mfmA b.1.8.1 22215 1pmd 675 2.79e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37491,37492,42562,42771 1z5zA 271 2.85e+01 1kevA 351 2.89e+01 1pedA b.35.1.2,c.2.1.1 24749,29765 1qmeA 702 2.93e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2gfaA 119 2.96e+01 1f9zA 135 2.97e+01 1qipA d.32.1.1 38484 2ag4A 164 2.99e+01 2fsrA 195 3.01e+01 1k0wA 231 3.03e+01 c.74.1.1 77220 1vg5A 73 3.04e+01 2breA 219 3.17e+01 1pbgA 468 3.19e+01 1e70M c.1.8.4 28946 1fa8A 135 3.21e+01 1qipA d.32.1.1 38486 1tw4A 125 3.39e+01 1crzA 403 3.42e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1ap6A 198 3.65e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1obdA 306 3.68e+01 d.143.1.1 86767 1pl4A 198 3.69e+01 a.2.11.1,d.44.1.1 94854,94855 1n0nA 199 3.70e+01 a.2.11.1,d.44.1.1 79750,79751 2agcA 162 3.71e+01 1g13A 162 3.76e+01 1g13A b.95.1.1 60194 1ig5A 75 3.91e+01 4icb a.39.1.1 62363 1uylA 236 4.00e+01 d.122.1.1 108147 1v52A 133 4.00e+01 2bkdN 134 4.07e+01 2cx5A 158 4.13e+01 1vjeA 166 4.17e+01 d.185.1.2 100807 1shbA 104 4.19e+01 1fmk d.93.1.1 40425 1innA 166 4.20e+01 1j98A d.185.1.2 62608 1qzgA 187 4.22e+01 b.40.4.3 96643 1q6zA 528 4.23e+01 1mg7A 417 4.31e+01 d.14.1.6,d.58.26.6 84954,84955 1o4rA 108 4.34e+01 d.93.1.1 92469 2ax4A 198 4.39e+01 2akzA 439 4.40e+01 1eyqA 222 4.42e+01 1eypA d.36.1.1 38534 1te6A 439 4.45e+01 c.1.11.1,d.54.1.1 106797,106798 1xniA 118 4.49e+01 1pu5A 164 4.57e+01 b.95.1.1 104310 1puc 105 4.57e+01 1puc d.97.1.1 40675 1jmmA 377 4.68e+01 b.30.6.1 71749 2agyA 361 4.71e+01 1uz1A 468 4.74e+01 1aerA 205 4.75e+01 1aerA d.166.1.1 42249 1ah6 220 4.78e+01 1yer d.122.1.1 41094 1y6uA 70 4.78e+01 1g5bA 221 4.80e+01 1g5bA d.159.1.3 60261 2brcA 214 4.85e+01 1a48 306 4.85e+01 1a48 d.143.1.1 41590 1zd9A 188 4.89e+01 1kveB 77 5.03e+01 1kveB 1vizA 240 5.08e+01 c.1.4.1 100784 1ieaA 192 5.18e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1j55A 95 5.21e+01 a.39.1.2 77078 1bfd 528 5.38e+01 1bfd c.31.1.3,c.36.1.5,c.36.1.9 31745,31801,31802 1neiA 60 5.39e+01 d.253.1.1 91843 1wba 175 5.47e+01 1wba b.42.4.1 25591 2agaA 190 5.48e+01 1tzpA 255 5.52e+01 d.65.1.3 107520 1yyaA 250 5.59e+01 1aw7A 194 5.63e+01 1aw7A b.40.2.2,d.15.6.1 25164,37753 1n2sA 299 5.65e+01 c.2.1.2 79857 1f35A 162 5.70e+01 1f35A b.94.1.1 59628 1rypL 212 5.82e+01 d.153.1.4 41880 1xu6A 80 5.93e+01 1th8A 145 5.99e+01 d.122.1.3 106908 2ftbA 125 6.03e+01 1nar 290 6.14e+01 1nar c.1.8.5 28988 1y80A 210 6.27e+01 2aj6A 159 6.38e+01 1vd3A 217 6.38e+01 1jcv 153 6.43e+01 1mfmA b.1.8.1 22279 2anxA 146 6.43e+01 1zt2B 212 6.62e+01 1bylA 125 6.66e+01 1bylA d.32.1.2 38495 1ikpA 613 6.82e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1o3yA 166 6.85e+01 c.37.1.8 86618 1byqA 228 6.89e+01 1yer d.122.1.1 41100 1rpyA 114 6.92e+01 d.93.1.1 97718 1o59A 355 6.97e+01 b.18.1.22,b.18.1.22 92495,92496 1dbqA 289 7.10e+01 1qpzA c.93.1.1 35666 1bbpA 173 7.13e+01 1bbpA b.60.1.1 27147 1byfA 125 7.25e+01 1byfA d.169.1.1 42419 1f3uA 118 7.30e+01 1f3uA b.65.1.1 27521 1xoyA 161 7.35e+01 1i3zA 103 7.41e+01 d.93.1.1 83667 2trxA 108 7.48e+01 1thx c.47.1.1 32719 1ir6A 424 7.54e+01 c.107.1.2 71342 2cayA 145 7.59e+01 1cf2O 337 7.66e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1xcbA 211 7.66e+01 a.4.5.38,c.2.1.12 109552,109553 1rypD 241 7.70e+01 1rypD d.153.1.4 41935 1f1gA 154 7.74e+01 b.1.8.1 76153 1qopB 396 7.79e+01 2tysB c.79.1.1 35270 1dkuA 317 7.91e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1mml 265 8.09e+01 1mml e.8.1.2 43015 1exbA 332 8.11e+01 1qrqA c.1.7.1 28666 1u3oA 82 8.19e+01 1nvpD 108 8.25e+01 a.32.1.1,b.56.1.1 92213,92214 2fibA 269 8.38e+01 3fib d.171.1.1 42457 2a0jA 149 8.38e+01 1m22A 503 8.62e+01 c.117.1.1 78464 1q3lA 69 8.84e+01 1y93A 159 8.89e+01 1skoA 143 8.89e+01 d.110.7.1 105676