# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1din 236 6.26e-01 1din c.69.1.9 34682 2f1kA 279 7.78e-01 1zi8A 236 1.09e+00 1vemA 516 1.35e+00 1itcA 516 1.41e+00 b.3.1.1,c.1.8.1 83705,83706 1wjxA 122 2.14e+00 2cb2A 318 2.48e+00 2cbuA 468 3.27e+00 1kshA 186 4.81e+00 c.37.1.8 72914 1j1hA 144 4.85e+00 b.111.1.1 77056 1w3jA 468 5.78e+00 c.1.8.4 109156 2agcA 162 8.30e+00 2brcA 214 1.19e+01 2breA 219 1.20e+01 2fsrA 195 1.22e+01 1ah6 220 1.28e+01 1yer d.122.1.1 41094 1n3gA 113 1.29e+01 d.204.1.1 79962 1uz1A 468 1.37e+01 1dkuA 317 1.42e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1csn 298 1.66e+01 1csn d.144.1.7 41664 2b20A 403 1.70e+01 1at0 145 1.76e+01 1at0 b.86.1.1 28374 1k0sA 151 1.80e+01 b.40.7.1 67969 1pbgA 468 1.96e+01 1e70M c.1.8.4 28946 1ywnA 316 2.00e+01 1y1uA 585 2.08e+01 1q15A 503 2.28e+01 c.26.2.1,d.153.1.1 95538,95539 1l2uA 245 2.36e+01 c.1.2.3 73516 1o7iA 119 2.38e+01 b.40.4.3 86642 2c1iA 431 2.41e+01 1iicA 422 2.41e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 2agyA 361 2.46e+01 1voqa 90 2.50e+01 1innA 166 2.55e+01 1j98A d.185.1.2 62608 1vjeA 166 2.56e+01 d.185.1.2 100807 2cblA 305 2.67e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1em2A 229 2.70e+01 1em2A d.129.3.2 41321 1jlyA 304 2.72e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 1k0wA 231 2.75e+01 c.74.1.1 77220 1nlfA 279 2.77e+01 c.37.1.11 85850 2c1gA 431 2.78e+01 2fm8A 135 2.81e+01 1xcbA 211 2.84e+01 a.4.5.38,c.2.1.12 109552,109553 1yvhA 329 2.85e+01 1qmeA 702 2.86e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1yyaA 250 2.89e+01 2dcyA 185 2.92e+01 1crzA 403 2.96e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1xnb 185 2.97e+01 1axkA b.29.1.11 24308 1xxnA 185 2.97e+01 1nar 290 3.00e+01 1nar c.1.8.5 28988 1th8A 145 3.06e+01 d.122.1.3 106908 1b35B 255 3.22e+01 1b35B b.121.4.1 23334 1yzbA 182 3.39e+01 1g8yA 279 3.41e+01 1g8yA c.37.1.11 32302 1pu5A 164 3.42e+01 b.95.1.1 104310 1wzvA 155 3.43e+01 4icb 76 3.48e+01 4icb a.39.1.1 17145 1xs1A 193 3.62e+01 1w9yA 319 3.71e+01 1mg4A 113 3.79e+01 d.15.11.1 84953 1ig5A 75 3.87e+01 4icb a.39.1.1 62363 1uw4A 91 3.87e+01 d.58.7.4 100071 1nvpD 108 4.27e+01 a.32.1.1,b.56.1.1 92213,92214 1irsA 112 4.47e+01 1qqgA b.55.1.2 26991 1xfuA 747 4.51e+01 2gfaA 119 4.68e+01 1zt2B 212 4.88e+01 1v4pA 157 4.89e+01 1g13A 162 4.92e+01 1g13A b.95.1.1 60194 2ag4A 164 4.94e+01 1m22A 503 5.04e+01 c.117.1.1 78464 1obdA 306 5.07e+01 d.143.1.1 86767 1q0eA 152 5.08e+01 b.1.8.1 95504 1yrvA 169 5.12e+01 2trxA 108 5.16e+01 1thx c.47.1.1 32719 1d8wA 426 5.21e+01 1de5A c.1.15.2 29394 1a48 306 5.28e+01 1a48 d.143.1.1 41590 1ap6A 198 5.47e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 2cnqA 306 5.55e+01 1o17A 345 5.56e+01 a.46.2.1,c.27.1.1 80765,80766 1n0nA 199 5.57e+01 a.2.11.1,d.44.1.1 79750,79751 1rcqA 357 5.57e+01 b.49.2.2,c.1.6.1 104882,104883 1pl4A 198 5.59e+01 a.2.11.1,d.44.1.1 94854,94855 1p4kA 295 5.59e+01 d.153.1.5 87772 1rypF 233 5.60e+01 1rypF d.153.1.4 41937 9gafA 295 5.62e+01 1apyA d.153.1.5 42008 1r9fA 136 5.66e+01 d.255.1.1 97257 2ag9A 164 5.70e+01 1oo0A 147 5.85e+01 d.232.1.1 87182 1cbjA 151 5.93e+01 1mfmA b.1.8.1 22213 1hyhA 309 6.05e+01 1hyhA c.2.1.5,d.162.1.1 30150,42117 1r29A 127 6.07e+01 d.42.1.1 96856 3fib 249 6.09e+01 3fib d.171.1.1 42455 1uurA 473 6.30e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1yh6A 179 6.59e+01 1btl 263 6.69e+01 1btl e.3.1.1 42691 1f9zA 135 6.71e+01 1qipA d.32.1.1 38484 1f3uA 118 6.78e+01 1f3uA b.65.1.1 27521 1y93A 159 6.82e+01 1j55A 95 6.85e+01 a.39.1.2 77078 1to4A 156 6.98e+01 b.1.8.1 107162 2f0aA 98 6.98e+01 1kveB 77 7.11e+01 1kveB 1l6oA 95 7.15e+01 b.36.1.1 84534 1nmoA 247 7.22e+01 c.135.1.1 91980 1nzyA 269 7.24e+01 1nzyA c.14.1.3 30903 1o50A 157 7.25e+01 d.37.1.1,d.37.1.1 92478,92479 2ca6A 386 7.34e+01 1fa8A 135 7.46e+01 1qipA d.32.1.1 38486 1rypD 241 7.55e+01 1rypD d.153.1.4 41935 2bkdN 134 7.62e+01 1suuA 312 7.68e+01 b.68.10.1 99006 2ax4A 198 7.70e+01 2aegA 268 7.71e+01 1xahA 354 7.76e+01 1krs 120 7.80e+01 1krs b.40.4.1 25256 1i3zA 103 7.82e+01 d.93.1.1 83667 1shbA 104 7.90e+01 1fmk d.93.1.1 40425 1x3pA 54 7.96e+01 1mrzA 293 8.00e+01 b.43.5.1,c.26.1.3 91452,91453 1v7oA 165 8.24e+01 d.67.1.2 100480 1f35A 162 8.26e+01 1f35A b.94.1.1 59628 1vg5A 73 8.26e+01 1x0vA 354 8.31e+01 1p4oA 322 8.36e+01 d.144.1.7 87775 1g5bA 221 8.40e+01 1g5bA d.159.1.3 60261 2fibA 269 8.45e+01 3fib d.171.1.1 42457 1t2jA 116 8.56e+01 1nnsA 326 8.58e+01 c.88.1.1 85910 1b9rA 105 8.64e+01 1ayfA d.15.4.1 37683 2bj0A 203 8.72e+01 1qzgA 187 8.77e+01 b.40.4.3 96643 1o4rA 108 8.81e+01 d.93.1.1 92469 1y3tA 337 8.92e+01 1bmtA 246 8.93e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1qvbA 481 8.93e+01 1qvbA c.1.8.4 28983