# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1itcA 516 1.23e+00 b.3.1.1,c.1.8.1 83705,83706 1vemA 516 2.17e+00 1yyvA 131 5.49e+00 1a4pA 96 6.41e+00 1b4cA a.39.1.2 17176 1seiA 130 6.59e+00 1seiA d.140.1.1 41463 1p65A 73 6.91e+00 d.254.1.1 94156 1y6uA 70 8.05e+00 1dszB 85 8.10e+00 2nllB g.39.1.2 45108 1rfeA 162 9.13e+00 2btiA 63 9.33e+00 1wbiA 129 9.99e+00 2aj6A 159 1.13e+01 1n3gA 113 1.17e+01 d.204.1.1 79962 1ig5A 75 1.19e+01 4icb a.39.1.1 62363 1g5bA 221 1.29e+01 1g5bA d.159.1.3 60261 1yewC 289 1.36e+01 1oyjA 231 1.46e+01 a.45.1.1,c.47.1.5 87597,87598 1lfc 25 1.71e+01 j.3.1.5 46074 1umqA 81 1.75e+01 a.4.1.12 99625 1syxB 86 1.80e+01 1fjgB 256 1.81e+01 1fjfB c.23.15.1 31400 2ew0A 192 1.84e+01 1vpzA 73 2.12e+01 1zy4A 303 2.15e+01 1h1yA 228 2.17e+01 c.1.2.2 76506 1pjqA 457 2.19e+01 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2bh8A 101 2.32e+01 2agcA 162 2.33e+01 1w9yA 319 2.34e+01 4icb 76 2.39e+01 4icb a.39.1.1 17145 1nlfA 279 2.49e+01 c.37.1.11 85850 2ezh 75 2.49e+01 2ezh a.4.1.2 16029 2byoA 207 2.66e+01 1v64A 108 2.72e+01 a.21.1.1 108392 1y43A 39 2.74e+01 1htjF 210 2.91e+01 1htjF a.91.1.1 61254 1ykhB 132 2.93e+01 1bylA 125 2.94e+01 1bylA d.32.1.2 38495 3bamA 213 2.94e+01 1bam c.52.1.3 33288 1uheA 97 3.03e+01 1t3qB 788 3.03e+01 d.41.1.1,d.133.1.1 106369,106370 1g8iA 190 3.14e+01 1rec a.39.1.5 60363 2ag4A 164 3.24e+01 1s72I 162 3.28e+01 a.4.7.1 105328 2ag9A 164 3.46e+01 1j55A 95 3.57e+01 a.39.1.2 77078 1jfzA 154 3.58e+01 a.149.1.1 66655 1xcbA 211 3.61e+01 a.4.5.38,c.2.1.12 109552,109553 1vp7A 100 3.70e+01 3fapB 94 3.74e+01 1nsgB a.24.7.1 16612 2gfaA 119 3.82e+01 2ar0A 541 3.93e+01 1hleB 31 4.08e+01 1hleB 1nvpD 108 4.08e+01 a.32.1.1,b.56.1.1 92213,92214 1sh0A 510 4.19e+01 e.8.1.4 98876 1irsA 112 4.22e+01 1qqgA b.55.1.2 26991 1vqoI 162 4.32e+01 1a17 166 4.32e+01 1a17 a.118.8.1 19206 1jt6A 188 4.45e+01 a.4.1.9,a.121.1.1 67247,67248 1rcqA 357 4.54e+01 b.49.2.2,c.1.6.1 104882,104883 2ao9A 155 4.66e+01 1rz4A 226 4.69e+01 a.4.5.53,a.118.1.18 105131,105132 1e0fI 57 4.82e+01 1e0fI g.3.15.2 44377 1ny4A 82 4.84e+01 b.40.4.5 92316 2b43A 526 5.00e+01 1adn 92 5.12e+01 1adn g.48.1.1 45348 1ihnA 113 5.21e+01 1ihnA c.103.1.1 62388 1tzyA 129 5.23e+01 a.22.1.1 107530 1ut8A 291 5.27e+01 a.60.7.1,c.120.1.2 99908,99909 1ofcX 304 5.32e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1xs1A 193 5.32e+01 1cczA 171 5.52e+01 1cczA b.1.1.1,b.1.1.3 19758,21683 1hq3A 129 5.53e+01 1aoiC a.22.1.1 16434 2fulA 178 5.56e+01 1y7qA 98 5.60e+01 1ef1A 294 5.67e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1xo1A 291 5.69e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 2avyM 117 5.90e+01 2bkdN 134 5.91e+01 1t98A 287 5.94e+01 2aaoA 166 5.94e+01 1mg4A 113 6.04e+01 d.15.11.1 84953 1at0 145 6.14e+01 1at0 b.86.1.1 28374 1x6iA 91 6.24e+01 1rmd 116 6.24e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1gyfA 62 6.25e+01 1gyfA d.76.1.1 39749 1pu5A 164 6.36e+01 b.95.1.1 104310 1oo2A 119 6.39e+01 b.3.4.1 93372 1ucsA 64 6.43e+01 b.85.1.1 88466 2fifB 70 6.52e+01 1puc 105 6.53e+01 1puc d.97.1.1 40675 1pz1A 333 6.62e+01 c.1.7.1 95390 2d00A 109 6.69e+01 1jiwI 106 6.77e+01 1smpI b.61.2.1 63078 1n93X 375 6.78e+01 a.206.1.1 91707 2a73B 991 6.84e+01 2ct7A 86 6.84e+01 1cixA 44 6.86e+01 g.3.6.2 70066 1wp5A 323 6.86e+01 1sknP 92 6.98e+01 1sknP a.37.1.1 17127 2cblA 305 7.05e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1hcd 118 7.40e+01 1hce b.42.5.2 25624 1njqA 39 7.43e+01 g.37.1.3 85822 1v52A 133 7.45e+01 1g13A 162 7.49e+01 1g13A b.95.1.1 60194 1gl2A 65 7.57e+01 h.1.15.1 65278 1xouA 192 7.68e+01 1jkxA 212 7.74e+01 c.65.1.1 66813 2c7nA 74 7.74e+01 1q5hA 147 7.80e+01 b.85.4.1 95893 1usuB 170 7.88e+01 d.83.2.1 99886 1dd9A 338 8.05e+01 1dd9A e.13.1.1 43254 1garA 212 8.08e+01 2gar c.65.1.1 34162 1oaiA 59 8.22e+01 a.5.2.3 81255 1l2pA 61 8.22e+01 f.23.21.1 73509 1yopA 83 8.31e+01 1yvhA 329 8.34e+01 1t5bA 201 8.46e+01 c.23.5.3 106433 1jlyA 304 8.49e+01 1jlyA b.42.3.1,b.42.3.1 25587,25588 2adbA 148 8.55e+01 2eu9A 355 8.64e+01 1v4pA 157 8.67e+01 1wzvA 155 8.72e+01 7taa 478 8.77e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1upvA 257 8.81e+01 2ez6A 221 8.83e+01 1hdmA 201 8.86e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 2cb2A 318 8.92e+01