;  SAM: prettyalign v3.5 (July 15, 2005) compiled 05/31/06_11:54:01
;  (c) 1992-2001 Regents of the University of California, Santa Cruz
;
;          Sequence Alignment and Modeling Software System
;         http://www.cse.ucsc.edu/research/compbio/sam.html
;
; ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
; R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
;  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
; K. Karplus, et al., What is the value added by human intervention in protein
;  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
; A. Krogh et al., Hidden Markov models in computational biology:
;  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
; ---------------------------------------------------------------------
                              10        20        30             40   
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T0314 M.............SIT...STDICQAADALKGFVGFNRKTGRYIVRFSEDSFG.....MDVAD
1oapA LqqnnivyfdldkyDIRsdfAQMLDAHANFLRS-----NPSYKVTVEGHADERGtpeyn-----


           50        60           70          80                      
            |         |            |           |                      
T0314 DSITPTSEFVWSSVRDDVMRLG...REQLQILLEQN.I.NERLNI.....GEP...........
1oapA ------------------ISLGerrANAVKMYLQGKgVsADQISIvsygkEKPavlghdeaays


          90       100      
           |         |      
T0314 ..LLVYLRRQDLPEITAQRQLR
1oapA knRRAVLV-------------Y