# List of top-scoring protein chains for T0313.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bg2 325 1.06e-48 1bg2 c.37.1.9 32189 1mkjA 349 1.07e-48 c.37.1.9 79239 1gojA 355 2.65e-47 c.37.1.9 65419 1i6iA 366 4.47e-47 1bg2 c.37.1.9 61844 1i5sA 367 4.47e-47 1bg2 c.37.1.9 61822 1ia0K 394 4.58e-47 i.10.1.1 71167 1vfvA 366 5.35e-47 c.37.1.9 108592 1x88A 359 9.92e-46 1q0bA 367 9.98e-46 c.37.1.9 95502 1ii6A 368 9.99e-46 1bg2 c.37.1.9 62413 1sdmA 369 1.98e-45 c.37.1.9 105438 1t5cA 349 2.43e-45 1cz7A 406 3.18e-43 1bg2 c.37.1.9 32194 2ncdA 420 3.21e-43 1bg2 c.37.1.9 32193 1n6mA 409 7.21e-43 c.37.1.9 91688 3kar 346 1.62e-42 1bg2 c.37.1.9 32198 1f9tA 358 1.82e-42 1bg2 c.37.1.9 59743 1f9uA 347 3.50e-42 1bg2 c.37.1.9 59744 1f9vA 347 4.03e-42 1bg2 c.37.1.9 59745 1f9wA 347 4.13e-42 1bg2 c.37.1.9 59746 2gryA 420 1.16e-41 1v8kA 410 1.22e-41 c.37.1.9 100510 1ry6A 360 2.37e-38 c.37.1.9 98090 2kinA 238 1.64e-34 1bg2 c.37.1.9 32190 2kinB 100 1.08e-14 3kinB 3kinB 117 3.90e-14 3kinB 1l8qA 324 2.45e-01 a.4.12.2,c.37.1.20 77809,77810 1d9xA 658 4.50e-01 1d2mA c.37.1.19,c.37.1.19 32419,32420 1t5lA 658 4.53e-01 c.37.1.19,c.37.1.19 106455,106456 1d9zA 657 4.57e-01 1d2mA c.37.1.19,c.37.1.19 32421,32422 2fdcA 658 4.67e-01 1p9rA 418 6.52e-01 c.37.1.11 94399 1qf9A 194 1.02e+00 1zin c.37.1.1 31848 1sxjC 340 1.04e+00 a.80.1.1,c.37.1.20 106085,106086 1d2mA 665 1.37e+00 1d2mA c.37.1.19,c.37.1.19 32417,32418 1c4oA 664 1.42e+00 1d2mA c.37.1.19,c.37.1.19 32415,32416 2d7dA 661 1.57e+00 1odfA 290 1.59e+00 c.37.1.6 92782 1um8A 376 2.47e+00 c.37.1.20 99580 1f60A 458 3.03e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1htjF 210 3.81e+00 1htjF a.91.1.1 61254 1qzxA 440 4.36e+00 a.24.13.1,a.36.1.1,c.37.1.10 96711,96712,96713 2cdnA 201 4.42e+00 1g291 372 6.31e+00 1g291 1sxjD 353 6.49e+00 a.80.1.1,c.37.1.20 106087,106088 1mr3F 181 6.55e+00 c.37.1.8 79422 1xw8A 252 6.68e+00 1g8pA 350 7.52e+00 1g8pA c.37.1.20 60376 1xwiA 322 9.41e+00 2ng1 293 9.68e+00 1ng1 a.24.13.1,c.37.1.10 16962,32273 1ffh 294 9.88e+00 1ng1 a.24.13.1,c.37.1.10 16960,32271 1ng1 294 1.04e+01 1ng1 a.24.13.1,c.37.1.10 16961,32272 1ls1A 295 1.06e+01 a.24.13.1,c.37.1.10 78170,78171 1jpnA 296 1.09e+01 a.24.13.1,c.37.1.10 67039,67040 1rj9B 300 1.12e+01 a.24.13.1,c.37.1.10 97555,97556 1o87A 297 1.12e+01 a.24.13.1,c.37.1.10 92640,92641 1ji0A 240 1.12e+01 c.37.1.12 71665 1jx2B 315 1.12e+01 c.37.1.8 67404 2d62A 375 1.20e+01 3adk 195 1.30e+01 1zin c.37.1.1 31885 2a5yB 549 1.36e+01 1lv7A 257 1.38e+01 c.37.1.20 78232 1mozA 183 1.49e+01 c.37.1.8 79368 1g6oA 330 1.53e+01 1g6oA c.37.1.11 32430 2ffhA 425 1.54e+01 1ng1 a.24.13.1,a.36.1.1,c.37.1.10 16965,17122,32276 1z83A 196 1.75e+01 2bwjA 199 1.80e+01 1iy2A 278 1.86e+01 c.37.1.20 76941 1ixzA 254 1.87e+01 c.37.1.20 76938 1k5cA 335 1.88e+01 b.80.1.3 72076 1bouB 302 1.93e+01 1bouB c.56.6.1 33859 1iduA 609 1.95e+01 1vns a.111.1.3 62303 1ko7A 314 1.97e+01 c.98.2.1,c.91.1.2 72797,72798 1vnh 609 2.00e+01 1vns a.111.1.3 19062 1v3eA 431 2.02e+01 b.68.1.1 100287 1vnf 609 2.05e+01 1vns a.111.1.3 19067 1vns 609 2.05e+01 1vns a.111.1.3 19061 1vng 609 2.06e+01 1vns a.111.1.3 19066 1vne 609 2.06e+01 1vns a.111.1.3 19063 1rj9A 304 2.07e+01 a.24.13.1,c.37.1.10 97553,97554 1eqfA 280 2.09e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1okkD 303 2.26e+01 a.24.13.1,c.37.1.10 93261,93262 2chlA 351 2.28e+01 1dtp 190 2.30e+01 1ddt d.166.1.1 42248 1fnnA 389 2.39e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1f0lA 535 2.41e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1p4sA 181 2.44e+01 c.37.1.1 94117 1xk9A 215 2.50e+01 1dmaA 214 2.53e+01 1aerA d.166.1.1 42251 1wxqA 397 2.55e+01 1f5nA 592 2.66e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1aerA 211 2.67e+01 1aerA d.166.1.1 42249 1z6tA 591 2.71e+01 1zm9B 207 2.82e+01 1yobA 179 2.94e+01 1aerB 201 2.99e+01 1aerA d.166.1.1 42250 1sifA 88 3.10e+01 d.15.1.1 105574 1fuuA 394 3.16e+01 1qvaA c.37.1.19 32412 1cjl 312 3.19e+01 1cs8A d.3.1.1 37066 2bhuA 602 3.47e+01 1r8qA 181 3.68e+01 c.37.1.8 97243 1tevA 196 3.70e+01 c.37.1.1 106817 2a9sA 171 3.84e+01 2gbjA 84 3.91e+01 1gl6A 436 3.96e+01 c.37.1.11 70259 1jgnA 98 4.01e+01 a.144.1.1 84170 1e9rA 437 4.01e+01 c.37.1.11 64827 1np2A 436 4.11e+01 c.1.8.4 85944 1hurA 180 4.18e+01 1hurA c.37.1.8 32052 1ltdA 506 4.23e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1m7sA 484 4.29e+01 e.5.1.1 74574 1lcoA 511 4.34e+01 1gox c.1.4.1,d.120.1.1 28624,41088 1szfA 511 4.35e+01 c.1.4.1 106153 1kbiA 511 4.36e+01 c.1.4.1,d.120.1.1 72277,72278 1szeA 511 4.36e+01 c.1.4.1 106151 1h65A 270 4.48e+01 c.37.1.8 65640 1eu1A 780 4.52e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1lurA 339 4.53e+01 b.30.5.4 84717 1j8mF 297 4.57e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1vdc 333 4.62e+01 1trb c.3.1.5,c.3.1.5 30545,30546 2fx0A 201 4.69e+01 1hv8A 367 4.78e+01 1hv8A c.37.1.19,c.37.1.19 32405,32406 2bcjQ 353 4.85e+01 2b34A 199 4.87e+01 1ii8A 195 4.90e+01 1f2tA c.37.1.12 62417 1m2oB 190 4.94e+01 c.37.1.8 78485 1thtA 305 4.96e+01 1thtA c.69.1.13 34711 1vciA 373 5.17e+01 1f42A 306 5.25e+01 1f42A b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1mg2A 390 5.28e+01 b.69.2.1 79059 1g8sA 230 5.30e+01 c.66.1.3 90507 1v43A 372 5.32e+01 2bkaA 242 5.36e+01 1powA 585 5.42e+01 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31733,31797,31798 1h4hA 209 5.43e+01 b.29.1.11 70865 1cs8A 316 5.45e+01 1cs8A d.3.1.1 37065 1m1uA 195 5.46e+01 c.62.1.1 74421 1f6bA 198 5.47e+01 c.37.1.8 64986 2f9dA 125 5.54e+01 2fji1 399 5.60e+01 1va6A 518 5.62e+01 1poxA 585 5.62e+01 1poxA c.31.1.3,c.36.1.5,c.36.1.9 31731,31793,31794 1qcwA 410 5.63e+01 1gox c.1.4.1 28622 2ce7A 476 5.65e+01 1ido 189 5.67e+01 1ido c.62.1.1 34139 1f4jA 527 5.67e+01 1cf9A e.5.1.1 42798 1nxmA 197 5.74e+01 b.82.1.1 86385 1do0A 442 5.75e+01 1do0A c.37.1.20 32432 2f9jA 125 5.75e+01 1lj9A 144 5.79e+01 a.4.5.28 78035 1g4aE 443 5.80e+01 1do0A c.37.1.20 32444 1np3A 338 5.81e+01 a.100.1.2,c.2.1.6 85946,85947 2bf1A 316 5.82e+01 1kkmA 205 5.86e+01 c.91.1.2 72654 1us8A 147 5.88e+01 c.37.1.12 99859 1kbjA 412 5.88e+01 c.1.4.1 72280 1f2tA 149 5.89e+01 1f2tA c.37.1.12 32373 1e94E 449 5.98e+01 1do0A c.37.1.20 32442 2ghpA 292 6.10e+01 2g0tA 350 6.49e+01 1r0oA 86 6.59e+01 g.39.1.2 96732 1zo1I 501 6.61e+01 1v39 322 6.63e+01 3mag c.66.1.25 34206 1av6A 295 6.77e+01 3mag c.66.1.25 34218 1vp3 348 6.78e+01 3mag c.66.1.25 34209 1uoeA 366 6.79e+01 c.119.1.2 107972 1n9zA 192 6.79e+01 c.62.1.1 85478 2bbjA 354 6.80e+01 1eqa 297 6.85e+01 3mag c.66.1.25 34216 1oi2A 366 6.85e+01 c.119.1.2 103802 3mct 297 6.87e+01 3mag c.66.1.25 34215 1eamA 307 6.89e+01 3mag c.66.1.25 34212 1jteA 307 6.90e+01 c.66.1.25 71860 1c4zA 358 6.94e+01 1c4zA d.148.1.1 41766 3mag 307 6.97e+01 3mag c.66.1.25 34205 1knxA 312 7.06e+01 c.98.2.1,c.91.1.2 77459,77460 2ez9A 603 7.10e+01 2mtaH 373 7.18e+01 2bbkH b.69.2.1 27636 1jlm 192 7.22e+01 1ido c.62.1.1 34140 2ax4A 198 7.23e+01 1y9dA 603 7.23e+01 1g6eA 87 7.27e+01 1g6eA b.11.1.6 60317 1fts 295 7.50e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 2b9zA 74 7.63e+01 1ukz 203 7.66e+01 1zin c.37.1.1 31840 1ltqA 301 7.69e+01 c.108.1.9,c.37.1.1 78208,78209 1z5zA 271 7.71e+01 1rm1C 286 7.83e+01 1mvwA 840 7.84e+01 i.15.1.1 79523 1ykdA 398 7.84e+01 1p3jA 217 7.85e+01 c.37.1.1,g.41.2.1 94022,94023 2mysA 843 7.91e+01 1lvk b.34.3.1,c.37.1.9 24557,32154 1rniA 216 7.94e+01 d.264.1.2 97663 2rig 144 8.09e+01 1d9cA a.26.1.3 16921 1idn1 190 8.16e+01 1ido 1vfoA 585 8.29e+01 1mf7A 194 8.40e+01 c.62.1.1 84937 1e69A 322 8.45e+01 1e69B c.37.1.12 32376 1hzjA 348 8.47e+01 1xel c.2.1.2 61450 1i3kA 348 8.63e+01 1xel c.2.1.2 61595 1dwaM 499 8.76e+01 1e70M c.1.8.4 28928 4dcg 307 8.85e+01 3mag c.66.1.25 34208 1tf7A 525 8.89e+01 c.37.1.11,c.37.1.11 106838,106839 1a7j 290 8.91e+01 1a7j c.37.1.6 31952 1ug6A 431 8.95e+01 c.1.8.4 88490