# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bg2 325 1.90e-55 1bg2 c.37.1.9 32189 1x88A 359 3.32e-50 1vfvA 366 2.11e-49 c.37.1.9 108592 1f9vA 347 5.78e-47 1bg2 c.37.1.9 59745 1ry6A 360 7.92e-45 c.37.1.9 98090 2akaB 299 1.51e-02 1odfA 290 2.41e-02 c.37.1.6 92782 1d2mA 665 4.00e-02 1d2mA c.37.1.19,c.37.1.19 32417,32418 1dq3A 454 8.42e-02 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1z47A 355 1.49e-01 1qf9A 194 2.53e-01 1zin c.37.1.1 31848 1c4oA 664 2.94e-01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1ihuA 589 3.33e-01 c.37.1.10,c.37.1.10 62394,62395 1j8mF 297 4.36e-01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1g291 372 4.79e-01 1g291 2fji1 399 5.08e-01 1yrbA 262 5.08e-01 2cdnA 201 6.39e-01 2fx0A 201 7.08e-01 1f5nA 592 1.03e+00 1dg3A a.114.1.1,c.37.1.8 19077,32152 1eu1A 780 1.11e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1tq4A 413 1.55e+00 c.37.1.8 107201 1f60A 458 1.69e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 3tmkA 216 1.85e+00 3tmkA c.37.1.1 31920 1xw8A 252 2.11e+00 1ls1A 295 2.74e+00 a.24.13.1,c.37.1.10 78170,78171 1w7jA 795 2.81e+00 1kqpA 271 2.82e+00 c.26.2.1 72883 1g8pA 350 2.88e+00 1g8pA c.37.1.20 60376 1i9gA 280 2.98e+00 c.66.1.13 62090 1zu4A 320 3.03e+00 1k0dA 260 3.32e+00 a.45.1.1,c.47.1.5 67930,67931 1ooyA 481 3.50e+00 c.124.1.3,c.124.1.2 93388,93389 1u8xX 472 3.52e+00 c.2.1.5,d.162.1.2 107741,107742 1hf8A 289 3.53e+00 1hg5A a.7.8.2,a.118.9.3 90354,90355 1wdtA 665 3.63e+00 1w9iA 770 3.97e+00 1sq5A 308 4.14e+00 c.37.1.6 105882 2fnaA 357 4.51e+00 1u9iA 519 4.64e+00 1oywA 523 4.78e+00 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2aiqA 231 5.28e+00 1e9rA 437 5.62e+00 c.37.1.11 64827 1yqtA 538 5.72e+00 1g2rA 100 5.72e+00 1g2rA d.192.1.1 60231 2bdeA 470 5.85e+00 1h65A 270 5.93e+00 c.37.1.8 65640 1gwiA 411 6.22e+00 a.104.1.1 76364 1m7gA 211 6.76e+00 c.37.1.4 78724 2ghpA 292 7.20e+00 1qhfA 240 7.64e+00 1qhfA c.60.1.1 33960 2fpmA 322 7.69e+00 1xfsA 178 7.81e+00 d.129.3.5 109589 1d2nA 272 8.11e+00 1d2nA c.37.1.20 32428 1u94A 356 8.78e+00 c.37.1.11,d.48.1.1 107743,107744 1fgyA 127 8.83e+00 1faoA b.55.1.1 26976 2bd0A 244 9.26e+00 1jpzA 473 9.50e+00 a.104.1.1 67069 2atrA 138 9.59e+00 1u69A 163 9.67e+00 d.32.1.7 107699 2a5yB 549 9.69e+00 1b7yB 785 1.06e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1ok7A 366 1.08e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1ycdA 243 1.08e+01 1fcdA 401 1.09e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1w36B 1180 1.11e+01 1fp2A 352 1.11e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2gfoA 396 1.14e+01 1vf8A 377 1.17e+01 1viaA 175 1.23e+01 c.37.1.2 100754 1ve1A 304 1.24e+01 1mwvA 714 1.25e+01 a.93.1.3,a.93.1.3 85161,85162 1z83A 196 1.29e+01 1xd8A 289 1.32e+01 1qwtA 255 1.42e+01 b.26.1.3 96501 1hl2A 297 1.59e+01 c.1.10.1 83581 1x6vA 630 1.60e+01 2b8wA 328 1.64e+01 1q5dA 419 1.67e+01 a.104.1.1 95891 1bif 469 1.69e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1czyA 168 1.78e+01 1d0aB b.8.1.1,h.1.2.1 23220,45427 1mj5A 302 1.78e+01 c.69.1.8 91285 1o98A 511 1.83e+01 c.105.1.1,c.76.1.3 86684,86685 1gvnB 287 1.83e+01 c.37.1.21 76354 2c1lA 358 1.90e+01 1jyaA 130 1.96e+01 d.198.1.1 67453 1xrjA 261 1.98e+01 1fnnA 389 1.98e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1vg8A 207 1.99e+01 c.37.1.8 108606 1m33A 258 2.11e+01 c.69.1.26 78514 1x13A 401 2.16e+01 1idpA 172 2.20e+01 d.17.4.1 83685 1qfjA 232 2.21e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1ed1A 135 2.21e+01 1hiwA a.61.1.1 18130 1oi7A 288 2.23e+01 c.2.1.8,c.23.4.1 87049,87050 1cipA 353 2.24e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1tzfA 259 2.27e+01 c.68.1.13 107476 2ahuA 531 2.31e+01 1cfzA 162 2.36e+01 1cfzA c.56.1.1 33754 1xnfA 275 2.38e+01 1vflA 356 2.38e+01 1xq6A 253 2.39e+01 1vhrA 184 2.39e+01 1vhrA c.45.1.1 32651 1g6hA 257 2.43e+01 1gajA c.37.1.12 60318 1qdeA 224 2.48e+01 1qvaA c.37.1.19 32410 1rlzA 369 2.50e+01 c.31.1.1 104989 1yzsA 121 2.55e+01 1k4iA 233 2.65e+01 d.115.1.2 72056 1pmmA 466 2.66e+01 c.67.1.6 94901 1ujnA 348 2.67e+01 e.22.1.1 99460 2gdjA 264 2.67e+01 2fqxA 318 2.69e+01 1vplA 256 2.75e+01 1pzgA 331 2.77e+01 c.2.1.5,d.162.1.1 95425,95426 1g7sA 594 2.79e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2bbsA 290 2.82e+01 1fjhA 257 2.88e+01 1fjhB c.2.1.2 29870 1dekA 241 2.99e+01 1dekA c.37.1.1 31842 1ehiA 377 3.02e+01 1iow c.30.1.2,d.142.1.1 31716,41484 1jflA 228 3.04e+01 c.78.2.1,c.78.2.1 71656,71657 1lv7A 257 3.18e+01 c.37.1.20 78232 1q8iA 783 3.21e+01 c.55.3.5,e.8.1.1 96208,96209 1bdmA 327 3.22e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1ulyA 192 3.22e+01 1ivnA 190 3.26e+01 c.23.10.5 83719 1o6dA 163 3.28e+01 c.116.1.3 92567 1tn6A 382 3.29e+01 2db3A 434 3.34e+01 1fmcA 255 3.35e+01 1cydA c.2.1.2 29856 1uj2A 252 3.36e+01 c.37.1.6 99452 1dg9A 157 3.37e+01 1dg9A c.44.1.1 32637 1svsA 353 3.39e+01 c.37.1.8 106051 1q0uA 219 3.46e+01 c.37.1.19 95512 1z0wA 207 3.48e+01 2furA 209 3.50e+01 1oyc 400 3.55e+01 1oyc c.1.4.1 28603 1dmgA 225 3.56e+01 1dmgA c.22.1.1 31036 1gadO 330 3.59e+01 1dssG c.2.1.3,d.81.1.1 29950,39865 1eswA 500 3.61e+01 1cwyA c.1.8.1 59500 1jbkA 195 3.62e+01 c.37.1.20 71631 1wohA 305 3.63e+01 c.42.1.1 109446 1vjzA 341 3.68e+01 c.1.8.3 100838 1l2tA 235 3.89e+01 c.37.1.12 73514 2cbzA 237 3.92e+01 1i6pA 220 3.95e+01 1ddzA c.53.2.1 61848 1yf2A 425 3.98e+01 1tmxA 293 4.00e+01 2a1iA 146 4.01e+01 2btoA 473 4.13e+01 2ak3A 226 4.14e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1rdfA 267 4.16e+01 c.108.1.3 104884 1xw3A 110 4.16e+01 1v5mA 136 4.22e+01 b.55.1.1 108379 2aq4A 434 4.24e+01 1w5fA 353 4.25e+01 1mkyA 439 4.29e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2g2cA 167 4.31e+01 1lldA 319 4.44e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1wer 334 4.46e+01 1wer a.116.1.2 19108 1qnrA 344 4.46e+01 1qnoA c.1.8.3 28834 2gi3A 476 4.46e+01 1xszA 356 4.49e+01 2bycA 137 4.54e+01 1xrsA 516 4.54e+01 1cs8A 316 4.57e+01 1cs8A d.3.1.1 37065 1h2eA 207 4.59e+01 c.60.1.1 70857 1w4tA 299 4.64e+01 1z5zA 271 4.67e+01 1tueA 212 4.72e+01 c.37.1.20 107323 1wmaA 276 4.74e+01 1sgwA 214 4.79e+01 c.37.1.12 105541 2cr9A 139 4.87e+01 1swvA 267 4.87e+01 2bkaA 242 4.92e+01 1hyp 80 4.97e+01 1hyp a.52.1.1 17806 2f7fA 494 4.98e+01 1ywzA 175 5.01e+01 1agjA 242 5.01e+01 1agjA b.47.1.1 25827 1dljA 402 5.02e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1ukgA 252 5.09e+01 b.29.1.1 99489 1vhtA 218 5.12e+01 c.37.1.1 100700 1v5eA 590 5.14e+01 1in4A 334 5.18e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1epwA 1290 5.19e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2pia 321 5.20e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2a9uA 144 5.32e+01 1vqqA 646 5.34e+01 1d5tA 433 5.37e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1ky3A 182 5.37e+01 c.37.1.8 73193 1u2pA 163 5.42e+01 2gjsA 176 5.45e+01 1v8bA 479 5.47e+01 1h6kZ 98 5.49e+01 d.58.7.1 60686 1jalA 363 5.56e+01 c.37.1.8,d.15.10.2 84138,84139 1ezfA 340 5.65e+01 1ezfA a.128.1.2 19440 1wzcA 249 5.66e+01 1qmgA 524 5.67e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1vmaA 306 5.77e+01 a.24.13.1,c.37.1.10 108887,108888 1kjwA 295 5.79e+01 b.34.2.1,c.37.1.1 68643,68644 1usyA 275 5.79e+01 1e58A 249 5.82e+01 1qhfA c.60.1.1 59262 1w0pA 781 5.89e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2gcc 70 5.92e+01 2gcc d.10.1.2 37484 1wi6A 88 5.94e+01 1tw9A 206 5.94e+01 a.45.1.1,c.47.1.5 107381,107382 1oheA 348 6.01e+01 c.45.1.1,c.45.1.1 87013,87014 1zin 217 6.01e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1uhkA 191 6.02e+01 1ohtA 215 6.05e+01 d.118.1.1 87036 1in6A 334 6.06e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1oxxK 353 6.08e+01 b.40.6.3,c.37.1.12 93715,93716 1wf3A 301 6.13e+01 1xkyA 301 6.14e+01 1rq2A 382 6.17e+01 c.32.1.1,d.79.2.1 105048,105049 2foyA 260 6.18e+01 1knqA 175 6.22e+01 c.37.1.17 72786 1lh0A 213 6.25e+01 c.61.1.1 73896 1z0jA 170 6.29e+01 1huw 166 6.34e+01 1huw a.26.1.1 16831 1n3lA 372 6.42e+01 c.26.1.1 79966 1i4dA 224 6.45e+01 h.4.7.1 61682 1qqp2 218 6.49e+01 1qqp2 4tmkA 213 6.51e+01 5tmpA c.37.1.1 31930 1w61A 414 6.63e+01 1kk1A 410 6.73e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1pjr 724 6.80e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1cp2A 269 6.82e+01 1cp2A c.37.1.10 32269 1np3A 338 6.83e+01 a.100.1.2,c.2.1.6 85946,85947 2c78A 405 6.84e+01 2cvhA 220 6.87e+01 2g39A 497 6.88e+01 1tkiA 321 7.05e+01 1tkiA d.144.1.7 41638 1xkwA 665 7.05e+01 1pz1A 333 7.05e+01 c.1.7.1 95390 1nijA 318 7.16e+01 c.37.1.10,d.237.1.1 85741,85742 1uluA 261 7.19e+01 1oxwA 373 7.27e+01 c.19.1.3 87539 2bcgG 453 7.29e+01 1wcgA 464 7.33e+01 2af4C 333 7.38e+01 1upaA 573 7.40e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1hm9A 468 7.41e+01 b.81.1.4,c.68.1.5 65866,65867 1c7qA 445 7.46e+01 2pgi c.80.1.2 35307 2yhx 457 7.47e+01 2yhx i.12.1.1 46024 1v0eA 666 7.52e+01 2ae6A 166 7.55e+01 2a4aA 281 7.56e+01 2ccjA 205 7.57e+01 1riiA 265 7.60e+01 2cbuA 468 7.65e+01 1noyA 388 7.67e+01 1clqA c.55.3.5 33713 2bvlA 543 7.72e+01 1u9kA 114 7.74e+01 2bcgY 206 7.86e+01 2f2hA 773 7.95e+01 1eqfA 280 7.96e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1itbB 315 8.05e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1mv8A 436 8.11e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1i1nA 226 8.21e+01 c.66.1.7 71102 1ig3A 263 8.24e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 1b0uA 262 8.25e+01 1b0uA c.37.1.12 32370 1eq2A 310 8.29e+01 1eq2A c.2.1.2 29814 2azjA 289 8.34e+01 1w7lA 422 8.37e+01 c.67.1.1 109226 1yhtA 367 8.55e+01 1w6uA 302 8.55e+01 1gpjA 404 8.60e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1efvA 315 8.63e+01 1efvA c.26.2.3,c.31.1.2 31633,31728 1uptA 171 8.64e+01 c.37.1.8 99767 1mr3F 181 8.65e+01 c.37.1.8 79422 1qhlA 227 8.81e+01 1qhlA c.37.1.12 32382 1uayA 242 8.86e+01 c.2.1.2 88390 1hdcA 253 8.93e+01 1e6wA c.2.1.2 29862 1iznA 286 8.94e+01 e.43.1.1 83847 1omhA 293 8.94e+01 d.89.1.5 93348