Best Alignments for T0312

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xv2A/T0312-1xv2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xv2A/T0312-1xv2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9435e-031.04e-13
2al3A/T0312-2al3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2al3A/T0312-2al3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0810e+001.70e-07
1c1yB/T0312-1c1yB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c1yB/T0312-1c1yB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8539e+001.14e-05 1c1yB d.15.1.5
1ys7A/T0312-1ys7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ys7A/T0312-1ys7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8579e+004.79e-05
1wrvA/T0312-1wrvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wrvA/T0312-1wrvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.3804e+002.00e-07
1m1hA/T0312-1m1hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m1hA/T0312-1m1hA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3135e+017.60e-11 b.114.1.1
d.58.42.1
1iyeA/T0312-1iyeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iyeA/T0312-1iyeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7313e+011.38e-05 e.17.1.1
1wn2A/T0312-1wn2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wn2A/T0312-1wn2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9361e+018.97e-05
1vcoA/T0312-1vcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vcoA/T0312-1vcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9850e+014.97e-06 c.23.16.1
c.37.1.10
1fukA/T0312-1fukA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fukA/T0312-1fukA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2613e+011.67e-05 1fukA c.37.1.19

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001