/projects/compbio/experiments/protein-predict/casp7/starter-directory/Make.main:725: SECONDARY_TARGET = T0311.t06.str2 mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0311.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.rdb sed -e s/XXX0000/T0311/ -e s/START_COL/1/ \ -e s/REAL_PDB/2icpA/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175144957 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.94625 sec, elapsed time= 5.12127 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 5.01624 sec, elapsed time= 5.2459 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0311 numbered 1 through 97 Created new target T0311 from T0311.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:2icpA expands to /projects/compbio/data/pdb/2icp.pdb.gz 2icpA:Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Read 87 residues and 672 atoms. # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.87395 sec, elapsed time= 7.17528 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 94 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -67.2414 # GDT_score(maxd=8,maxw=2.9)= -67.9922 # GDT_score(maxd=8,maxw=3.2)= -65.6985 # GDT_score(maxd=8,maxw=3.5)= -63.1088 # GDT_score(maxd=10,maxw=3.8)= -65.7559 # GDT_score(maxd=10,maxw=4)= -63.9436 # GDT_score(maxd=10,maxw=4.2)= -62.1225 # GDT_score(maxd=12,maxw=4.3)= -65.5378 # GDT_score(maxd=12,maxw=4.5)= -63.7296 # GDT_score(maxd=12,maxw=4.7)= -61.9345 # GDT_score(maxd=14,maxw=5.2)= -61.0089 # GDT_score(maxd=14,maxw=5.5)= -58.4191 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.0190000e+03 rmsd (weighted)= 6.8017459e+00 (unweighted)= 1.6481443e+01 superimposing iter= 1 total_weight= 2.9024722e+03 rmsd (weighted)= 2.8272165e+00 (unweighted)= 1.6485000e+01 superimposing iter= 2 total_weight= 1.3341847e+03 rmsd (weighted)= 1.9618323e+00 (unweighted)= 1.6558610e+01 superimposing iter= 3 total_weight= 8.3453886e+02 rmsd (weighted)= 1.7452091e+00 (unweighted)= 1.6606535e+01 superimposing iter= 4 total_weight= 7.2766428e+02 rmsd (weighted)= 1.6655856e+00 (unweighted)= 1.6641127e+01 superimposing iter= 5 total_weight= 7.0286479e+02 rmsd (weighted)= 1.6170859e+00 (unweighted)= 1.6668279e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2139992740.pdb -s /var/tmp/to_scwrl_2139992740.seq -o /var/tmp/from_scwrl_2139992740.pdb > /var/tmp/scwrl_2139992740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2139992740.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1 # GDT_score = -67.2414 # GDT_score(maxd=8,maxw=2.9)= -68.0433 # GDT_score(maxd=8,maxw=3.2)= -65.756 # GDT_score(maxd=8,maxw=3.5)= -63.1308 # GDT_score(maxd=10,maxw=3.8)= -65.7662 # GDT_score(maxd=10,maxw=4)= -63.9394 # GDT_score(maxd=10,maxw=4.2)= -62.1504 # GDT_score(maxd=12,maxw=4.3)= -65.5288 # GDT_score(maxd=12,maxw=4.5)= -63.7547 # GDT_score(maxd=12,maxw=4.7)= -62.0021 # GDT_score(maxd=14,maxw=5.2)= -61.1586 # GDT_score(maxd=14,maxw=5.5)= -58.5999 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1493945075.pdb -s /var/tmp/to_scwrl_1493945075.seq -o /var/tmp/from_scwrl_1493945075.pdb > /var/tmp/scwrl_1493945075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1493945075.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -66.954 # GDT_score(maxd=8,maxw=2.9)= -68.2707 # GDT_score(maxd=8,maxw=3.2)= -65.7821 # GDT_score(maxd=8,maxw=3.5)= -62.816 # GDT_score(maxd=10,maxw=3.8)= -65.3029 # GDT_score(maxd=10,maxw=4)= -63.4297 # GDT_score(maxd=10,maxw=4.2)= -61.6174 # GDT_score(maxd=12,maxw=4.3)= -64.7863 # GDT_score(maxd=12,maxw=4.5)= -62.9978 # GDT_score(maxd=12,maxw=4.7)= -61.1211 # GDT_score(maxd=14,maxw=5.2)= -60.0162 # GDT_score(maxd=14,maxw=5.5)= -57.3931 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1885412222.pdb -s /var/tmp/to_scwrl_1885412222.seq -o /var/tmp/from_scwrl_1885412222.pdb > /var/tmp/scwrl_1885412222.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1885412222.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -65.2299 # GDT_score(maxd=8,maxw=2.9)= -67.3283 # GDT_score(maxd=8,maxw=3.2)= -65.1448 # GDT_score(maxd=8,maxw=3.5)= -62.4469 # GDT_score(maxd=10,maxw=3.8)= -64.776 # GDT_score(maxd=10,maxw=4)= -62.984 # GDT_score(maxd=10,maxw=4.2)= -61.2093 # GDT_score(maxd=12,maxw=4.3)= -64.4648 # GDT_score(maxd=12,maxw=4.5)= -62.7194 # GDT_score(maxd=12,maxw=4.7)= -61.0096 # GDT_score(maxd=14,maxw=5.2)= -60.2032 # GDT_score(maxd=14,maxw=5.5)= -57.7271 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_977326601.pdb -s /var/tmp/to_scwrl_977326601.seq -o /var/tmp/from_scwrl_977326601.pdb > /var/tmp/scwrl_977326601.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_977326601.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -67.5287 # GDT_score(maxd=8,maxw=2.9)= -67.9948 # GDT_score(maxd=8,maxw=3.2)= -65.7533 # GDT_score(maxd=8,maxw=3.5)= -62.9845 # GDT_score(maxd=10,maxw=3.8)= -65.6901 # GDT_score(maxd=10,maxw=4)= -63.8567 # GDT_score(maxd=10,maxw=4.2)= -62.0447 # GDT_score(maxd=12,maxw=4.3)= -65.5173 # GDT_score(maxd=12,maxw=4.5)= -63.7241 # GDT_score(maxd=12,maxw=4.7)= -61.9733 # GDT_score(maxd=14,maxw=5.2)= -61.1207 # GDT_score(maxd=14,maxw=5.5)= -58.5923 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1806661309.pdb -s /var/tmp/to_scwrl_1806661309.seq -o /var/tmp/from_scwrl_1806661309.pdb > /var/tmp/scwrl_1806661309.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1806661309.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0311.try1-opt2.pdb looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -66.092 # GDT_score(maxd=8,maxw=2.9)= -67.4119 # GDT_score(maxd=8,maxw=3.2)= -64.9695 # GDT_score(maxd=8,maxw=3.5)= -62.0723 # GDT_score(maxd=10,maxw=3.8)= -64.5203 # GDT_score(maxd=10,maxw=4)= -62.7038 # GDT_score(maxd=10,maxw=4.2)= -60.9442 # GDT_score(maxd=12,maxw=4.3)= -64.1504 # GDT_score(maxd=12,maxw=4.5)= -62.4159 # GDT_score(maxd=12,maxw=4.7)= -60.7015 # GDT_score(maxd=14,maxw=5.2)= -59.8438 # GDT_score(maxd=14,maxw=5.5)= -57.3419 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 1.0190000e+03 rmsd (weighted)= 9.2637717e+00 (unweighted)= 1.8557121e+01 superimposing iter= 1 total_weight= 2.7706584e+03 rmsd (weighted)= 3.5571068e+00 (unweighted)= 1.9188499e+01 superimposing iter= 2 total_weight= 1.6251295e+03 rmsd (weighted)= 2.1258049e+00 (unweighted)= 1.9530154e+01 superimposing iter= 3 total_weight= 1.0449872e+03 rmsd (weighted)= 1.6553452e+00 (unweighted)= 1.9689479e+01 superimposing iter= 4 total_weight= 8.2889535e+02 rmsd (weighted)= 1.4575972e+00 (unweighted)= 1.9812750e+01 superimposing iter= 5 total_weight= 7.5992504e+02 rmsd (weighted)= 1.3400038e+00 (unweighted)= 1.9937489e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.62069 # GDT_score = -52.8736 # GDT_score(maxd=8,maxw=2.9)= -56.8713 # GDT_score(maxd=8,maxw=3.2)= -54.5204 # GDT_score(maxd=8,maxw=3.5)= -51.8742 # GDT_score(maxd=10,maxw=3.8)= -52.9245 # GDT_score(maxd=10,maxw=4)= -51.1736 # GDT_score(maxd=10,maxw=4.2)= -49.4839 # GDT_score(maxd=12,maxw=4.3)= -51.5385 # GDT_score(maxd=12,maxw=4.5)= -49.9358 # GDT_score(maxd=12,maxw=4.7)= -48.4467 # GDT_score(maxd=14,maxw=5.2)= -47.1805 # GDT_score(maxd=14,maxw=5.5)= -45.3202 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.747126 # GDT_score = -60.3448 # GDT_score(maxd=8,maxw=2.9)= -62.3523 # GDT_score(maxd=8,maxw=3.2)= -60.4696 # GDT_score(maxd=8,maxw=3.5)= -58.1431 # GDT_score(maxd=10,maxw=3.8)= -59.7231 # GDT_score(maxd=10,maxw=4)= -58.0623 # GDT_score(maxd=10,maxw=4.2)= -56.4008 # GDT_score(maxd=12,maxw=4.3)= -58.7892 # GDT_score(maxd=12,maxw=4.5)= -57.1866 # GDT_score(maxd=12,maxw=4.7)= -55.5713 # GDT_score(maxd=14,maxw=5.2)= -54.3175 # GDT_score(maxd=14,maxw=5.5)= -52.1222 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry1cTermRotAndCap.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry4breakatS75.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file helixDownFromTry6.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try8MoveCtermOutTake2.renum.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1utxA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1utxA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2b5aA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2b5aA # ReadConformPDB reading from PDB file ../dimer/decoys/try8MoveCtermOutTake2.renum.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//try8MoveCtermOutTake2.renum # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1639052397.pdb -s /var/tmp/to_scwrl_1639052397.seq -o /var/tmp/from_scwrl_1639052397.pdb > /var/tmp/scwrl_1639052397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1639052397.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_457639592.pdb -s /var/tmp/to_scwrl_457639592.seq -o /var/tmp/from_scwrl_457639592.pdb > /var/tmp/scwrl_457639592.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_457639592.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1990985034.pdb -s /var/tmp/to_scwrl_1990985034.seq -o /var/tmp/from_scwrl_1990985034.pdb > /var/tmp/scwrl_1990985034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1990985034.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_258796448.pdb -s /var/tmp/to_scwrl_258796448.seq -o /var/tmp/from_scwrl_258796448.pdb > /var/tmp/scwrl_258796448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_258796448.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1773077180.pdb -s /var/tmp/to_scwrl_1773077180.seq -o /var/tmp/from_scwrl_1773077180.pdb > /var/tmp/scwrl_1773077180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773077180.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2074927498.pdb -s /var/tmp/to_scwrl_2074927498.seq -o /var/tmp/from_scwrl_2074927498.pdb > /var/tmp/scwrl_2074927498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074927498.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1463505068.pdb -s /var/tmp/to_scwrl_1463505068.seq -o /var/tmp/from_scwrl_1463505068.pdb > /var/tmp/scwrl_1463505068.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463505068.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1976979688.pdb -s /var/tmp/to_scwrl_1976979688.seq -o /var/tmp/from_scwrl_1976979688.pdb > /var/tmp/scwrl_1976979688.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1976979688.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1044483535.pdb -s /var/tmp/to_scwrl_1044483535.seq -o /var/tmp/from_scwrl_1044483535.pdb > /var/tmp/scwrl_1044483535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1044483535.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_900233456.pdb -s /var/tmp/to_scwrl_900233456.seq -o /var/tmp/from_scwrl_900233456.pdb > /var/tmp/scwrl_900233456.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_900233456.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_16247906.pdb -s /var/tmp/to_scwrl_16247906.seq -o /var/tmp/from_scwrl_16247906.pdb > /var/tmp/scwrl_16247906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16247906.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_43796382.pdb -s /var/tmp/to_scwrl_43796382.seq -o /var/tmp/from_scwrl_43796382.pdb > /var/tmp/scwrl_43796382.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43796382.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_668710703.pdb -s /var/tmp/to_scwrl_668710703.seq -o /var/tmp/from_scwrl_668710703.pdb > /var/tmp/scwrl_668710703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_668710703.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1192232768.pdb -s /var/tmp/to_scwrl_1192232768.seq -o /var/tmp/from_scwrl_1192232768.pdb > /var/tmp/scwrl_1192232768.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1192232768.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_901968407.pdb -s /var/tmp/to_scwrl_901968407.seq -o /var/tmp/from_scwrl_901968407.pdb > /var/tmp/scwrl_901968407.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_901968407.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_222635240.pdb -s /var/tmp/to_scwrl_222635240.seq -o /var/tmp/from_scwrl_222635240.pdb > /var/tmp/scwrl_222635240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_222635240.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_515788486.pdb -s /var/tmp/to_scwrl_515788486.seq -o /var/tmp/from_scwrl_515788486.pdb > /var/tmp/scwrl_515788486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_515788486.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_108591250.pdb -s /var/tmp/to_scwrl_108591250.seq -o /var/tmp/from_scwrl_108591250.pdb > /var/tmp/scwrl_108591250.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_108591250.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_690620948.pdb -s /var/tmp/to_scwrl_690620948.seq -o /var/tmp/from_scwrl_690620948.pdb > /var/tmp/scwrl_690620948.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_690620948.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1673602538.pdb -s /var/tmp/to_scwrl_1673602538.seq -o /var/tmp/from_scwrl_1673602538.pdb > /var/tmp/scwrl_1673602538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673602538.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1575122578.pdb -s /var/tmp/to_scwrl_1575122578.seq -o /var/tmp/from_scwrl_1575122578.pdb > /var/tmp/scwrl_1575122578.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1575122578.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1248578697.pdb -s /var/tmp/to_scwrl_1248578697.seq -o /var/tmp/from_scwrl_1248578697.pdb > /var/tmp/scwrl_1248578697.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1248578697.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_270753241.pdb -s /var/tmp/to_scwrl_270753241.seq -o /var/tmp/from_scwrl_270753241.pdb > /var/tmp/scwrl_270753241.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_270753241.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_488285139.pdb -s /var/tmp/to_scwrl_488285139.seq -o /var/tmp/from_scwrl_488285139.pdb > /var/tmp/scwrl_488285139.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_488285139.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_456107672.pdb -s /var/tmp/to_scwrl_456107672.seq -o /var/tmp/from_scwrl_456107672.pdb > /var/tmp/scwrl_456107672.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456107672.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2045077745.pdb -s /var/tmp/to_scwrl_2045077745.seq -o /var/tmp/from_scwrl_2045077745.pdb > /var/tmp/scwrl_2045077745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045077745.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_480794233.pdb -s /var/tmp/to_scwrl_480794233.seq -o /var/tmp/from_scwrl_480794233.pdb > /var/tmp/scwrl_480794233.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_480794233.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1950052747.pdb -s /var/tmp/to_scwrl_1950052747.seq -o /var/tmp/from_scwrl_1950052747.pdb > /var/tmp/scwrl_1950052747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1950052747.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1783006321.pdb -s /var/tmp/to_scwrl_1783006321.seq -o /var/tmp/from_scwrl_1783006321.pdb > /var/tmp/scwrl_1783006321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1783006321.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1458120833.pdb -s /var/tmp/to_scwrl_1458120833.seq -o /var/tmp/from_scwrl_1458120833.pdb > /var/tmp/scwrl_1458120833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1458120833.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1609230409.pdb -s /var/tmp/to_scwrl_1609230409.seq -o /var/tmp/from_scwrl_1609230409.pdb > /var/tmp/scwrl_1609230409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609230409.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1274575071.pdb -s /var/tmp/to_scwrl_1274575071.seq -o /var/tmp/from_scwrl_1274575071.pdb > /var/tmp/scwrl_1274575071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1274575071.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1915760425.pdb -s /var/tmp/to_scwrl_1915760425.seq -o /var/tmp/from_scwrl_1915760425.pdb > /var/tmp/scwrl_1915760425.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1915760425.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1452731797.pdb -s /var/tmp/to_scwrl_1452731797.seq -o /var/tmp/from_scwrl_1452731797.pdb > /var/tmp/scwrl_1452731797.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1452731797.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1533371519.pdb -s /var/tmp/to_scwrl_1533371519.seq -o /var/tmp/from_scwrl_1533371519.pdb > /var/tmp/scwrl_1533371519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1533371519.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1541353958.pdb -s /var/tmp/to_scwrl_1541353958.seq -o /var/tmp/from_scwrl_1541353958.pdb > /var/tmp/scwrl_1541353958.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1541353958.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1380175648.pdb -s /var/tmp/to_scwrl_1380175648.seq -o /var/tmp/from_scwrl_1380175648.pdb > /var/tmp/scwrl_1380175648.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1380175648.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_849392941.pdb -s /var/tmp/to_scwrl_849392941.seq -o /var/tmp/from_scwrl_849392941.pdb > /var/tmp/scwrl_849392941.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_849392941.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1370850000.pdb -s /var/tmp/to_scwrl_1370850000.seq -o /var/tmp/from_scwrl_1370850000.pdb > /var/tmp/scwrl_1370850000.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1370850000.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_277175537.pdb -s /var/tmp/to_scwrl_277175537.seq -o /var/tmp/from_scwrl_277175537.pdb > /var/tmp/scwrl_277175537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277175537.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1749626397.pdb -s /var/tmp/to_scwrl_1749626397.seq -o /var/tmp/from_scwrl_1749626397.pdb > /var/tmp/scwrl_1749626397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749626397.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1387097906.pdb -s /var/tmp/to_scwrl_1387097906.seq -o /var/tmp/from_scwrl_1387097906.pdb > /var/tmp/scwrl_1387097906.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1387097906.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_320971919.pdb -s /var/tmp/to_scwrl_320971919.seq -o /var/tmp/from_scwrl_320971919.pdb > /var/tmp/scwrl_320971919.log Error: Couldn't open file /var/tmp/from_scwrl_320971919.pdb or /var/tmp/from_scwrl_320971919.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_320971919_b.pdb or decoys//var/tmp/from_scwrl_320971919_b.pdb.gz for input Trying /var/tmp/from_scwrl_320971919_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_320971919_b.pdb or /var/tmp/from_scwrl_320971919_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_320971919_a.pdb or decoys//var/tmp/from_scwrl_320971919_a.pdb.gz for input Trying /var/tmp/from_scwrl_320971919_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_320971919_a.pdb or /var/tmp/from_scwrl_320971919_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_320971919.pdb or /var/tmp/from_scwrl_320971919_b.pdb or /var/tmp/from_scwrl_320971919_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_270853453.pdb -s /var/tmp/to_scwrl_270853453.seq -o /var/tmp/from_scwrl_270853453.pdb > /var/tmp/scwrl_270853453.log Error: Couldn't open file /var/tmp/from_scwrl_270853453.pdb or /var/tmp/from_scwrl_270853453.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_270853453_b.pdb or decoys//var/tmp/from_scwrl_270853453_b.pdb.gz for input Trying /var/tmp/from_scwrl_270853453_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_270853453_b.pdb or /var/tmp/from_scwrl_270853453_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_270853453_a.pdb or decoys//var/tmp/from_scwrl_270853453_a.pdb.gz for input Trying /var/tmp/from_scwrl_270853453_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_270853453_a.pdb or /var/tmp/from_scwrl_270853453_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_270853453.pdb or /var/tmp/from_scwrl_270853453_b.pdb or /var/tmp/from_scwrl_270853453_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_431847028.pdb -s /var/tmp/to_scwrl_431847028.seq -o /var/tmp/from_scwrl_431847028.pdb > /var/tmp/scwrl_431847028.log Error: Couldn't open file /var/tmp/from_scwrl_431847028.pdb or /var/tmp/from_scwrl_431847028.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_431847028_b.pdb or decoys//var/tmp/from_scwrl_431847028_b.pdb.gz for input Trying /var/tmp/from_scwrl_431847028_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_431847028_b.pdb or /var/tmp/from_scwrl_431847028_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_431847028_a.pdb or decoys//var/tmp/from_scwrl_431847028_a.pdb.gz for input Trying /var/tmp/from_scwrl_431847028_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_431847028_a.pdb or /var/tmp/from_scwrl_431847028_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_431847028.pdb or /var/tmp/from_scwrl_431847028_b.pdb or /var/tmp/from_scwrl_431847028_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1222940325.pdb -s /var/tmp/to_scwrl_1222940325.seq -o /var/tmp/from_scwrl_1222940325.pdb > /var/tmp/scwrl_1222940325.log Error: Couldn't open file /var/tmp/from_scwrl_1222940325.pdb or /var/tmp/from_scwrl_1222940325.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1222940325_b.pdb or decoys//var/tmp/from_scwrl_1222940325_b.pdb.gz for input Trying /var/tmp/from_scwrl_1222940325_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1222940325_b.pdb or /var/tmp/from_scwrl_1222940325_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1222940325_a.pdb or decoys//var/tmp/from_scwrl_1222940325_a.pdb.gz for input Trying /var/tmp/from_scwrl_1222940325_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1222940325_a.pdb or /var/tmp/from_scwrl_1222940325_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1222940325.pdb or /var/tmp/from_scwrl_1222940325_b.pdb or /var/tmp/from_scwrl_1222940325_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_493488694.pdb -s /var/tmp/to_scwrl_493488694.seq -o /var/tmp/from_scwrl_493488694.pdb > /var/tmp/scwrl_493488694.log Error: Couldn't open file /var/tmp/from_scwrl_493488694.pdb or /var/tmp/from_scwrl_493488694.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_493488694_b.pdb or decoys//var/tmp/from_scwrl_493488694_b.pdb.gz for input Trying /var/tmp/from_scwrl_493488694_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_493488694_b.pdb or /var/tmp/from_scwrl_493488694_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_493488694_a.pdb or decoys//var/tmp/from_scwrl_493488694_a.pdb.gz for input Trying /var/tmp/from_scwrl_493488694_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_493488694_a.pdb or /var/tmp/from_scwrl_493488694_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_493488694.pdb or /var/tmp/from_scwrl_493488694_b.pdb or /var/tmp/from_scwrl_493488694_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_947635514.pdb -s /var/tmp/to_scwrl_947635514.seq -o /var/tmp/from_scwrl_947635514.pdb > /var/tmp/scwrl_947635514.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_947635514.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1331531575.pdb -s /var/tmp/to_scwrl_1331531575.seq -o /var/tmp/from_scwrl_1331531575.pdb > /var/tmp/scwrl_1331531575.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1331531575.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1184109641.pdb -s /var/tmp/to_scwrl_1184109641.seq -o /var/tmp/from_scwrl_1184109641.pdb > /var/tmp/scwrl_1184109641.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1184109641.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_473754405.pdb -s /var/tmp/to_scwrl_473754405.seq -o /var/tmp/from_scwrl_473754405.pdb > /var/tmp/scwrl_473754405.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_473754405.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_759170508.pdb -s /var/tmp/to_scwrl_759170508.seq -o /var/tmp/from_scwrl_759170508.pdb > /var/tmp/scwrl_759170508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759170508.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_285204692.pdb -s /var/tmp/to_scwrl_285204692.seq -o /var/tmp/from_scwrl_285204692.pdb > /var/tmp/scwrl_285204692.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285204692.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_744507647.pdb -s /var/tmp/to_scwrl_744507647.seq -o /var/tmp/from_scwrl_744507647.pdb > /var/tmp/scwrl_744507647.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_744507647.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1247455646.pdb -s /var/tmp/to_scwrl_1247455646.seq -o /var/tmp/from_scwrl_1247455646.pdb > /var/tmp/scwrl_1247455646.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1247455646.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_741312364.pdb -s /var/tmp/to_scwrl_741312364.seq -o /var/tmp/from_scwrl_741312364.pdb > /var/tmp/scwrl_741312364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741312364.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_642101745.pdb -s /var/tmp/to_scwrl_642101745.seq -o /var/tmp/from_scwrl_642101745.pdb > /var/tmp/scwrl_642101745.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_642101745.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1728249879.pdb -s /var/tmp/to_scwrl_1728249879.seq -o /var/tmp/from_scwrl_1728249879.pdb > /var/tmp/scwrl_1728249879.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1728249879.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_543881464.pdb -s /var/tmp/to_scwrl_543881464.seq -o /var/tmp/from_scwrl_543881464.pdb > /var/tmp/scwrl_543881464.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_543881464.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_277624419.pdb -s /var/tmp/to_scwrl_277624419.seq -o /var/tmp/from_scwrl_277624419.pdb > /var/tmp/scwrl_277624419.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_277624419.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1038887067.pdb -s /var/tmp/to_scwrl_1038887067.seq -o /var/tmp/from_scwrl_1038887067.pdb > /var/tmp/scwrl_1038887067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1038887067.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_5628227.pdb -s /var/tmp/to_scwrl_5628227.seq -o /var/tmp/from_scwrl_5628227.pdb > /var/tmp/scwrl_5628227.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_5628227.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1552199490.pdb -s /var/tmp/to_scwrl_1552199490.seq -o /var/tmp/from_scwrl_1552199490.pdb > /var/tmp/scwrl_1552199490.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1552199490.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_807163845.pdb -s /var/tmp/to_scwrl_807163845.seq -o /var/tmp/from_scwrl_807163845.pdb > /var/tmp/scwrl_807163845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_807163845.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1458360024.pdb -s /var/tmp/to_scwrl_1458360024.seq -o /var/tmp/from_scwrl_1458360024.pdb > /var/tmp/scwrl_1458360024.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1458360024.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_938087364.pdb -s /var/tmp/to_scwrl_938087364.seq -o /var/tmp/from_scwrl_938087364.pdb > /var/tmp/scwrl_938087364.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_938087364.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_201034157.pdb -s /var/tmp/to_scwrl_201034157.seq -o /var/tmp/from_scwrl_201034157.pdb > /var/tmp/scwrl_201034157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_201034157.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_691052026.pdb -s /var/tmp/to_scwrl_691052026.seq -o /var/tmp/from_scwrl_691052026.pdb > /var/tmp/scwrl_691052026.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691052026.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1787480304.pdb -s /var/tmp/to_scwrl_1787480304.seq -o /var/tmp/from_scwrl_1787480304.pdb > /var/tmp/scwrl_1787480304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787480304.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1571884157.pdb -s /var/tmp/to_scwrl_1571884157.seq -o /var/tmp/from_scwrl_1571884157.pdb > /var/tmp/scwrl_1571884157.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1571884157.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_968227563.pdb -s /var/tmp/to_scwrl_968227563.seq -o /var/tmp/from_scwrl_968227563.pdb > /var/tmp/scwrl_968227563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968227563.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1389623054.pdb -s /var/tmp/to_scwrl_1389623054.seq -o /var/tmp/from_scwrl_1389623054.pdb > /var/tmp/scwrl_1389623054.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1389623054.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_811498417.pdb -s /var/tmp/to_scwrl_811498417.seq -o /var/tmp/from_scwrl_811498417.pdb > /var/tmp/scwrl_811498417.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_811498417.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1289199481.pdb -s /var/tmp/to_scwrl_1289199481.seq -o /var/tmp/from_scwrl_1289199481.pdb > /var/tmp/scwrl_1289199481.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1289199481.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1660476508.pdb -s /var/tmp/to_scwrl_1660476508.seq -o /var/tmp/from_scwrl_1660476508.pdb > /var/tmp/scwrl_1660476508.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1660476508.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1243345444.pdb -s /var/tmp/to_scwrl_1243345444.seq -o /var/tmp/from_scwrl_1243345444.pdb > /var/tmp/scwrl_1243345444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243345444.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_364656161.pdb -s /var/tmp/to_scwrl_364656161.seq -o /var/tmp/from_scwrl_364656161.pdb > /var/tmp/scwrl_364656161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364656161.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_6481555.pdb -s /var/tmp/to_scwrl_6481555.seq -o /var/tmp/from_scwrl_6481555.pdb > /var/tmp/scwrl_6481555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_6481555.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_43497312.pdb -s /var/tmp/to_scwrl_43497312.seq -o /var/tmp/from_scwrl_43497312.pdb > /var/tmp/scwrl_43497312.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_43497312.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1696187736.pdb -s /var/tmp/to_scwrl_1696187736.seq -o /var/tmp/from_scwrl_1696187736.pdb > /var/tmp/scwrl_1696187736.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1696187736.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1190591196.pdb -s /var/tmp/to_scwrl_1190591196.seq -o /var/tmp/from_scwrl_1190591196.pdb > /var/tmp/scwrl_1190591196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190591196.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_517251717.pdb -s /var/tmp/to_scwrl_517251717.seq -o /var/tmp/from_scwrl_517251717.pdb > /var/tmp/scwrl_517251717.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_517251717.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_307874597.pdb -s /var/tmp/to_scwrl_307874597.seq -o /var/tmp/from_scwrl_307874597.pdb > /var/tmp/scwrl_307874597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307874597.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1475795888.pdb -s /var/tmp/to_scwrl_1475795888.seq -o /var/tmp/from_scwrl_1475795888.pdb > /var/tmp/scwrl_1475795888.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1475795888.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1261759363.pdb -s /var/tmp/to_scwrl_1261759363.seq -o /var/tmp/from_scwrl_1261759363.pdb > /var/tmp/scwrl_1261759363.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1261759363.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1555330244.pdb -s /var/tmp/to_scwrl_1555330244.seq -o /var/tmp/from_scwrl_1555330244.pdb > /var/tmp/scwrl_1555330244.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1555330244.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_69624606.pdb -s /var/tmp/to_scwrl_69624606.seq -o /var/tmp/from_scwrl_69624606.pdb > /var/tmp/scwrl_69624606.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_69624606.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1903861109.pdb -s /var/tmp/to_scwrl_1903861109.seq -o /var/tmp/from_scwrl_1903861109.pdb > /var/tmp/scwrl_1903861109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1903861109.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1136096476.pdb -s /var/tmp/to_scwrl_1136096476.seq -o /var/tmp/from_scwrl_1136096476.pdb > /var/tmp/scwrl_1136096476.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1136096476.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_613506070.pdb -s /var/tmp/to_scwrl_613506070.seq -o /var/tmp/from_scwrl_613506070.pdb > /var/tmp/scwrl_613506070.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613506070.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_34001881.pdb -s /var/tmp/to_scwrl_34001881.seq -o /var/tmp/from_scwrl_34001881.pdb > /var/tmp/scwrl_34001881.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_34001881.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_27499896.pdb -s /var/tmp/to_scwrl_27499896.seq -o /var/tmp/from_scwrl_27499896.pdb > /var/tmp/scwrl_27499896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_27499896.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_619134297.pdb -s /var/tmp/to_scwrl_619134297.seq -o /var/tmp/from_scwrl_619134297.pdb > /var/tmp/scwrl_619134297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_619134297.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1586201372.pdb -s /var/tmp/to_scwrl_1586201372.seq -o /var/tmp/from_scwrl_1586201372.pdb > /var/tmp/scwrl_1586201372.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1586201372.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_834663742.pdb -s /var/tmp/to_scwrl_834663742.seq -o /var/tmp/from_scwrl_834663742.pdb > /var/tmp/scwrl_834663742.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_834663742.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2077494321.pdb -s /var/tmp/to_scwrl_2077494321.seq -o /var/tmp/from_scwrl_2077494321.pdb > /var/tmp/scwrl_2077494321.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077494321.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_376805089.pdb -s /var/tmp/to_scwrl_376805089.seq -o /var/tmp/from_scwrl_376805089.pdb > /var/tmp/scwrl_376805089.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_376805089.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1035697899.pdb -s /var/tmp/to_scwrl_1035697899.seq -o /var/tmp/from_scwrl_1035697899.pdb > /var/tmp/scwrl_1035697899.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1035697899.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_621062701.pdb -s /var/tmp/to_scwrl_621062701.seq -o /var/tmp/from_scwrl_621062701.pdb > /var/tmp/scwrl_621062701.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_621062701.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_16801746.pdb -s /var/tmp/to_scwrl_16801746.seq -o /var/tmp/from_scwrl_16801746.pdb > /var/tmp/scwrl_16801746.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_16801746.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_460098409.pdb -s /var/tmp/to_scwrl_460098409.seq -o /var/tmp/from_scwrl_460098409.pdb > /var/tmp/scwrl_460098409.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_460098409.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1589290263.pdb -s /var/tmp/to_scwrl_1589290263.seq -o /var/tmp/from_scwrl_1589290263.pdb > /var/tmp/scwrl_1589290263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1589290263.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1406424801.pdb -s /var/tmp/to_scwrl_1406424801.seq -o /var/tmp/from_scwrl_1406424801.pdb > /var/tmp/scwrl_1406424801.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406424801.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1271596825.pdb -s /var/tmp/to_scwrl_1271596825.seq -o /var/tmp/from_scwrl_1271596825.pdb > /var/tmp/scwrl_1271596825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271596825.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_731006099.pdb -s /var/tmp/to_scwrl_731006099.seq -o /var/tmp/from_scwrl_731006099.pdb > /var/tmp/scwrl_731006099.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_731006099.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_919417663.pdb -s /var/tmp/to_scwrl_919417663.seq -o /var/tmp/from_scwrl_919417663.pdb > /var/tmp/scwrl_919417663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_919417663.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_367458623.pdb -s /var/tmp/to_scwrl_367458623.seq -o /var/tmp/from_scwrl_367458623.pdb > /var/tmp/scwrl_367458623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_367458623.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1095662259.pdb -s /var/tmp/to_scwrl_1095662259.seq -o /var/tmp/from_scwrl_1095662259.pdb > /var/tmp/scwrl_1095662259.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1095662259.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_925899218.pdb -s /var/tmp/to_scwrl_925899218.seq -o /var/tmp/from_scwrl_925899218.pdb > /var/tmp/scwrl_925899218.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925899218.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_410955935.pdb -s /var/tmp/to_scwrl_410955935.seq -o /var/tmp/from_scwrl_410955935.pdb > /var/tmp/scwrl_410955935.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_410955935.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_644366349.pdb -s /var/tmp/to_scwrl_644366349.seq -o /var/tmp/from_scwrl_644366349.pdb > /var/tmp/scwrl_644366349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_644366349.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2116490414.pdb -s /var/tmp/to_scwrl_2116490414.seq -o /var/tmp/from_scwrl_2116490414.pdb > /var/tmp/scwrl_2116490414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2116490414.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_928207653.pdb -s /var/tmp/to_scwrl_928207653.seq -o /var/tmp/from_scwrl_928207653.pdb > /var/tmp/scwrl_928207653.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_928207653.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_952240947.pdb -s /var/tmp/to_scwrl_952240947.seq -o /var/tmp/from_scwrl_952240947.pdb > /var/tmp/scwrl_952240947.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_952240947.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1444802655.pdb -s /var/tmp/to_scwrl_1444802655.seq -o /var/tmp/from_scwrl_1444802655.pdb > /var/tmp/scwrl_1444802655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444802655.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_42483369.pdb -s /var/tmp/to_scwrl_42483369.seq -o /var/tmp/from_scwrl_42483369.pdb > /var/tmp/scwrl_42483369.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42483369.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_360087544.pdb -s /var/tmp/to_scwrl_360087544.seq -o /var/tmp/from_scwrl_360087544.pdb > /var/tmp/scwrl_360087544.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_360087544.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1514427261.pdb -s /var/tmp/to_scwrl_1514427261.seq -o /var/tmp/from_scwrl_1514427261.pdb > /var/tmp/scwrl_1514427261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1514427261.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1946344478.pdb -s /var/tmp/to_scwrl_1946344478.seq -o /var/tmp/from_scwrl_1946344478.pdb > /var/tmp/scwrl_1946344478.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1946344478.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1496184020.pdb -s /var/tmp/to_scwrl_1496184020.seq -o /var/tmp/from_scwrl_1496184020.pdb > /var/tmp/scwrl_1496184020.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1496184020.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2127933332.pdb -s /var/tmp/to_scwrl_2127933332.seq -o /var/tmp/from_scwrl_2127933332.pdb > /var/tmp/scwrl_2127933332.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2127933332.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1980346360.pdb -s /var/tmp/to_scwrl_1980346360.seq -o /var/tmp/from_scwrl_1980346360.pdb > /var/tmp/scwrl_1980346360.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1980346360.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1523683917.pdb -s /var/tmp/to_scwrl_1523683917.seq -o /var/tmp/from_scwrl_1523683917.pdb > /var/tmp/scwrl_1523683917.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1523683917.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_599583982.pdb -s /var/tmp/to_scwrl_599583982.seq -o /var/tmp/from_scwrl_599583982.pdb > /var/tmp/scwrl_599583982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_599583982.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1419064085.pdb -s /var/tmp/to_scwrl_1419064085.seq -o /var/tmp/from_scwrl_1419064085.pdb > /var/tmp/scwrl_1419064085.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1419064085.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_210864012.pdb -s /var/tmp/to_scwrl_210864012.seq -o /var/tmp/from_scwrl_210864012.pdb > /var/tmp/scwrl_210864012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_210864012.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_529594657.pdb -s /var/tmp/to_scwrl_529594657.seq -o /var/tmp/from_scwrl_529594657.pdb > /var/tmp/scwrl_529594657.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_529594657.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1795869174.pdb -s /var/tmp/to_scwrl_1795869174.seq -o /var/tmp/from_scwrl_1795869174.pdb > /var/tmp/scwrl_1795869174.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795869174.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1246561910.pdb -s /var/tmp/to_scwrl_1246561910.seq -o /var/tmp/from_scwrl_1246561910.pdb > /var/tmp/scwrl_1246561910.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246561910.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1150657357.pdb -s /var/tmp/to_scwrl_1150657357.seq -o /var/tmp/from_scwrl_1150657357.pdb > /var/tmp/scwrl_1150657357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150657357.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1812670920.pdb -s /var/tmp/to_scwrl_1812670920.seq -o /var/tmp/from_scwrl_1812670920.pdb > /var/tmp/scwrl_1812670920.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1812670920.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1706660319.pdb -s /var/tmp/to_scwrl_1706660319.seq -o /var/tmp/from_scwrl_1706660319.pdb > /var/tmp/scwrl_1706660319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1706660319.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_592463974.pdb -s /var/tmp/to_scwrl_592463974.seq -o /var/tmp/from_scwrl_592463974.pdb > /var/tmp/scwrl_592463974.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_592463974.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1071612075.pdb -s /var/tmp/to_scwrl_1071612075.seq -o /var/tmp/from_scwrl_1071612075.pdb > /var/tmp/scwrl_1071612075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1071612075.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_830773498.pdb -s /var/tmp/to_scwrl_830773498.seq -o /var/tmp/from_scwrl_830773498.pdb > /var/tmp/scwrl_830773498.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_830773498.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1323470072.pdb -s /var/tmp/to_scwrl_1323470072.seq -o /var/tmp/from_scwrl_1323470072.pdb > /var/tmp/scwrl_1323470072.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1323470072.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1991029737.pdb -s /var/tmp/to_scwrl_1991029737.seq -o /var/tmp/from_scwrl_1991029737.pdb > /var/tmp/scwrl_1991029737.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1991029737.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1198232120.pdb -s /var/tmp/to_scwrl_1198232120.seq -o /var/tmp/from_scwrl_1198232120.pdb > /var/tmp/scwrl_1198232120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198232120.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_271648685.pdb -s /var/tmp/to_scwrl_271648685.seq -o /var/tmp/from_scwrl_271648685.pdb > /var/tmp/scwrl_271648685.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_271648685.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_769445308.pdb -s /var/tmp/to_scwrl_769445308.seq -o /var/tmp/from_scwrl_769445308.pdb > /var/tmp/scwrl_769445308.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769445308.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1609188056.pdb -s /var/tmp/to_scwrl_1609188056.seq -o /var/tmp/from_scwrl_1609188056.pdb > /var/tmp/scwrl_1609188056.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1609188056.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_916015035.pdb -s /var/tmp/to_scwrl_916015035.seq -o /var/tmp/from_scwrl_916015035.pdb > /var/tmp/scwrl_916015035.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_916015035.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_738452075.pdb -s /var/tmp/to_scwrl_738452075.seq -o /var/tmp/from_scwrl_738452075.pdb > /var/tmp/scwrl_738452075.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_738452075.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_389912062.pdb -s /var/tmp/to_scwrl_389912062.seq -o /var/tmp/from_scwrl_389912062.pdb > /var/tmp/scwrl_389912062.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389912062.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1868255981.pdb -s /var/tmp/to_scwrl_1868255981.seq -o /var/tmp/from_scwrl_1868255981.pdb > /var/tmp/scwrl_1868255981.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868255981.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_35771084.pdb -s /var/tmp/to_scwrl_35771084.seq -o /var/tmp/from_scwrl_35771084.pdb > /var/tmp/scwrl_35771084.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_35771084.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_432395431.pdb -s /var/tmp/to_scwrl_432395431.seq -o /var/tmp/from_scwrl_432395431.pdb > /var/tmp/scwrl_432395431.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_432395431.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_80859878.pdb -s /var/tmp/to_scwrl_80859878.seq -o /var/tmp/from_scwrl_80859878.pdb > /var/tmp/scwrl_80859878.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_80859878.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1550198345.pdb -s /var/tmp/to_scwrl_1550198345.seq -o /var/tmp/from_scwrl_1550198345.pdb > /var/tmp/scwrl_1550198345.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1550198345.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_231256263.pdb -s /var/tmp/to_scwrl_231256263.seq -o /var/tmp/from_scwrl_231256263.pdb > /var/tmp/scwrl_231256263.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_231256263.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1577043898.pdb -s /var/tmp/to_scwrl_1577043898.seq -o /var/tmp/from_scwrl_1577043898.pdb > /var/tmp/scwrl_1577043898.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1577043898.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1530648030.pdb -s /var/tmp/to_scwrl_1530648030.seq -o /var/tmp/from_scwrl_1530648030.pdb > /var/tmp/scwrl_1530648030.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1530648030.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_64118976.pdb -s /var/tmp/to_scwrl_64118976.seq -o /var/tmp/from_scwrl_64118976.pdb > /var/tmp/scwrl_64118976.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_64118976.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_953244169.pdb -s /var/tmp/to_scwrl_953244169.seq -o /var/tmp/from_scwrl_953244169.pdb > /var/tmp/scwrl_953244169.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_953244169.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2130232013.pdb -s /var/tmp/to_scwrl_2130232013.seq -o /var/tmp/from_scwrl_2130232013.pdb > /var/tmp/scwrl_2130232013.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2130232013.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1483183061.pdb -s /var/tmp/to_scwrl_1483183061.seq -o /var/tmp/from_scwrl_1483183061.pdb > /var/tmp/scwrl_1483183061.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1483183061.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1164108180.pdb -s /var/tmp/to_scwrl_1164108180.seq -o /var/tmp/from_scwrl_1164108180.pdb > /var/tmp/scwrl_1164108180.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1164108180.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_512343023.pdb -s /var/tmp/to_scwrl_512343023.seq -o /var/tmp/from_scwrl_512343023.pdb > /var/tmp/scwrl_512343023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_512343023.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1131568588.pdb -s /var/tmp/to_scwrl_1131568588.seq -o /var/tmp/from_scwrl_1131568588.pdb > /var/tmp/scwrl_1131568588.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1131568588.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_263186444.pdb -s /var/tmp/to_scwrl_263186444.seq -o /var/tmp/from_scwrl_263186444.pdb > /var/tmp/scwrl_263186444.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_263186444.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1663000380.pdb -s /var/tmp/to_scwrl_1663000380.seq -o /var/tmp/from_scwrl_1663000380.pdb > /var/tmp/scwrl_1663000380.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663000380.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_796755862.pdb -s /var/tmp/to_scwrl_796755862.seq -o /var/tmp/from_scwrl_796755862.pdb > /var/tmp/scwrl_796755862.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_796755862.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1969846763.pdb -s /var/tmp/to_scwrl_1969846763.seq -o /var/tmp/from_scwrl_1969846763.pdb > /var/tmp/scwrl_1969846763.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1969846763.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_107980707.pdb -s /var/tmp/to_scwrl_107980707.seq -o /var/tmp/from_scwrl_107980707.pdb > /var/tmp/scwrl_107980707.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_107980707.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1868367937.pdb -s /var/tmp/to_scwrl_1868367937.seq -o /var/tmp/from_scwrl_1868367937.pdb > /var/tmp/scwrl_1868367937.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1868367937.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_653136614.pdb -s /var/tmp/to_scwrl_653136614.seq -o /var/tmp/from_scwrl_653136614.pdb > /var/tmp/scwrl_653136614.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_653136614.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1431450780.pdb -s /var/tmp/to_scwrl_1431450780.seq -o /var/tmp/from_scwrl_1431450780.pdb > /var/tmp/scwrl_1431450780.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1431450780.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1711914027.pdb -s /var/tmp/to_scwrl_1711914027.seq -o /var/tmp/from_scwrl_1711914027.pdb > /var/tmp/scwrl_1711914027.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1711914027.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1851368735.pdb -s /var/tmp/to_scwrl_1851368735.seq -o /var/tmp/from_scwrl_1851368735.pdb > /var/tmp/scwrl_1851368735.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1851368735.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1703099465.pdb -s /var/tmp/to_scwrl_1703099465.seq -o /var/tmp/from_scwrl_1703099465.pdb > /var/tmp/scwrl_1703099465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1703099465.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_333875689.pdb -s /var/tmp/to_scwrl_333875689.seq -o /var/tmp/from_scwrl_333875689.pdb > /var/tmp/scwrl_333875689.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_333875689.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1313073144.pdb -s /var/tmp/to_scwrl_1313073144.seq -o /var/tmp/from_scwrl_1313073144.pdb > /var/tmp/scwrl_1313073144.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1313073144.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_471630853.pdb -s /var/tmp/to_scwrl_471630853.seq -o /var/tmp/from_scwrl_471630853.pdb > /var/tmp/scwrl_471630853.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_471630853.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1072327764.pdb -s /var/tmp/to_scwrl_1072327764.seq -o /var/tmp/from_scwrl_1072327764.pdb > /var/tmp/scwrl_1072327764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072327764.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1702985206.pdb -s /var/tmp/to_scwrl_1702985206.seq -o /var/tmp/from_scwrl_1702985206.pdb > /var/tmp/scwrl_1702985206.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1702985206.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_192403187.pdb -s /var/tmp/to_scwrl_192403187.seq -o /var/tmp/from_scwrl_192403187.pdb > /var/tmp/scwrl_192403187.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_192403187.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1108098847.pdb -s /var/tmp/to_scwrl_1108098847.seq -o /var/tmp/from_scwrl_1108098847.pdb > /var/tmp/scwrl_1108098847.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1108098847.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2135380637.pdb -s /var/tmp/to_scwrl_2135380637.seq -o /var/tmp/from_scwrl_2135380637.pdb > /var/tmp/scwrl_2135380637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135380637.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_273263065.pdb -s /var/tmp/to_scwrl_273263065.seq -o /var/tmp/from_scwrl_273263065.pdb > /var/tmp/scwrl_273263065.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_273263065.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_510813547.pdb -s /var/tmp/to_scwrl_510813547.seq -o /var/tmp/from_scwrl_510813547.pdb > /var/tmp/scwrl_510813547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_510813547.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_219153253.pdb -s /var/tmp/to_scwrl_219153253.seq -o /var/tmp/from_scwrl_219153253.pdb > /var/tmp/scwrl_219153253.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_219153253.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1850306964.pdb -s /var/tmp/to_scwrl_1850306964.seq -o /var/tmp/from_scwrl_1850306964.pdb > /var/tmp/scwrl_1850306964.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1850306964.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2041461577.pdb -s /var/tmp/to_scwrl_2041461577.seq -o /var/tmp/from_scwrl_2041461577.pdb > /var/tmp/scwrl_2041461577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2041461577.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_283272229.pdb -s /var/tmp/to_scwrl_283272229.seq -o /var/tmp/from_scwrl_283272229.pdb > /var/tmp/scwrl_283272229.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_283272229.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_656067486.pdb -s /var/tmp/to_scwrl_656067486.seq -o /var/tmp/from_scwrl_656067486.pdb > /var/tmp/scwrl_656067486.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_656067486.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 43, because occupancy 1.0000000e+00 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2024209943.pdb -s /var/tmp/to_scwrl_2024209943.seq -o /var/tmp/from_scwrl_2024209943.pdb > /var/tmp/scwrl_2024209943.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2024209943.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1766455290.pdb -s /var/tmp/to_scwrl_1766455290.seq -o /var/tmp/from_scwrl_1766455290.pdb > /var/tmp/scwrl_1766455290.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1766455290.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1820175667.pdb -s /var/tmp/to_scwrl_1820175667.seq -o /var/tmp/from_scwrl_1820175667.pdb > /var/tmp/scwrl_1820175667.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820175667.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_389069319.pdb -s /var/tmp/to_scwrl_389069319.seq -o /var/tmp/from_scwrl_389069319.pdb > /var/tmp/scwrl_389069319.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_389069319.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_750540232.pdb -s /var/tmp/to_scwrl_750540232.seq -o /var/tmp/from_scwrl_750540232.pdb > /var/tmp/scwrl_750540232.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_750540232.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2083362111.pdb -s /var/tmp/to_scwrl_2083362111.seq -o /var/tmp/from_scwrl_2083362111.pdb > /var/tmp/scwrl_2083362111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083362111.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2052069699.pdb -s /var/tmp/to_scwrl_2052069699.seq -o /var/tmp/from_scwrl_2052069699.pdb > /var/tmp/scwrl_2052069699.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2052069699.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1547296094.pdb -s /var/tmp/to_scwrl_1547296094.seq -o /var/tmp/from_scwrl_1547296094.pdb > /var/tmp/scwrl_1547296094.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1547296094.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1905725228.pdb -s /var/tmp/to_scwrl_1905725228.seq -o /var/tmp/from_scwrl_1905725228.pdb > /var/tmp/scwrl_1905725228.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1905725228.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_12566760.pdb -s /var/tmp/to_scwrl_12566760.seq -o /var/tmp/from_scwrl_12566760.pdb > /var/tmp/scwrl_12566760.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12566760.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1268180384.pdb -s /var/tmp/to_scwrl_1268180384.seq -o /var/tmp/from_scwrl_1268180384.pdb > /var/tmp/scwrl_1268180384.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268180384.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_411378195.pdb -s /var/tmp/to_scwrl_411378195.seq -o /var/tmp/from_scwrl_411378195.pdb > /var/tmp/scwrl_411378195.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_411378195.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1444017540.pdb -s /var/tmp/to_scwrl_1444017540.seq -o /var/tmp/from_scwrl_1444017540.pdb > /var/tmp/scwrl_1444017540.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1444017540.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_832610765.pdb -s /var/tmp/to_scwrl_832610765.seq -o /var/tmp/from_scwrl_832610765.pdb > /var/tmp/scwrl_832610765.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_832610765.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_115263283.pdb -s /var/tmp/to_scwrl_115263283.seq -o /var/tmp/from_scwrl_115263283.pdb > /var/tmp/scwrl_115263283.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_115263283.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_999633359.pdb -s /var/tmp/to_scwrl_999633359.seq -o /var/tmp/from_scwrl_999633359.pdb > /var/tmp/scwrl_999633359.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_999633359.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1166486453.pdb -s /var/tmp/to_scwrl_1166486453.seq -o /var/tmp/from_scwrl_1166486453.pdb > /var/tmp/scwrl_1166486453.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1166486453.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1428336427.pdb -s /var/tmp/to_scwrl_1428336427.seq -o /var/tmp/from_scwrl_1428336427.pdb > /var/tmp/scwrl_1428336427.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1428336427.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1471264212.pdb -s /var/tmp/to_scwrl_1471264212.seq -o /var/tmp/from_scwrl_1471264212.pdb > /var/tmp/scwrl_1471264212.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1471264212.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_91330571.pdb -s /var/tmp/to_scwrl_91330571.seq -o /var/tmp/from_scwrl_91330571.pdb > /var/tmp/scwrl_91330571.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_91330571.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_983837987.pdb -s /var/tmp/to_scwrl_983837987.seq -o /var/tmp/from_scwrl_983837987.pdb > /var/tmp/scwrl_983837987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_983837987.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1663667399.pdb -s /var/tmp/to_scwrl_1663667399.seq -o /var/tmp/from_scwrl_1663667399.pdb > /var/tmp/scwrl_1663667399.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1663667399.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1199429418.pdb -s /var/tmp/to_scwrl_1199429418.seq -o /var/tmp/from_scwrl_1199429418.pdb > /var/tmp/scwrl_1199429418.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1199429418.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_971734978.pdb -s /var/tmp/to_scwrl_971734978.seq -o /var/tmp/from_scwrl_971734978.pdb > /var/tmp/scwrl_971734978.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_971734978.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1936930465.pdb -s /var/tmp/to_scwrl_1936930465.seq -o /var/tmp/from_scwrl_1936930465.pdb > /var/tmp/scwrl_1936930465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1936930465.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1710242965.pdb -s /var/tmp/to_scwrl_1710242965.seq -o /var/tmp/from_scwrl_1710242965.pdb > /var/tmp/scwrl_1710242965.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1710242965.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1190888230.pdb -s /var/tmp/to_scwrl_1190888230.seq -o /var/tmp/from_scwrl_1190888230.pdb > /var/tmp/scwrl_1190888230.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1190888230.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1639753782.pdb -s /var/tmp/to_scwrl_1639753782.seq -o /var/tmp/from_scwrl_1639753782.pdb > /var/tmp/scwrl_1639753782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1639753782.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1604220896.pdb -s /var/tmp/to_scwrl_1604220896.seq -o /var/tmp/from_scwrl_1604220896.pdb > /var/tmp/scwrl_1604220896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1604220896.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1474160460.pdb -s /var/tmp/to_scwrl_1474160460.seq -o /var/tmp/from_scwrl_1474160460.pdb > /var/tmp/scwrl_1474160460.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1474160460.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_148337621.pdb -s /var/tmp/to_scwrl_148337621.seq -o /var/tmp/from_scwrl_148337621.pdb > /var/tmp/scwrl_148337621.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_148337621.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1480947192.pdb -s /var/tmp/to_scwrl_1480947192.seq -o /var/tmp/from_scwrl_1480947192.pdb > /var/tmp/scwrl_1480947192.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1480947192.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1093132103.pdb -s /var/tmp/to_scwrl_1093132103.seq -o /var/tmp/from_scwrl_1093132103.pdb > /var/tmp/scwrl_1093132103.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1093132103.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1968513288.pdb -s /var/tmp/to_scwrl_1968513288.seq -o /var/tmp/from_scwrl_1968513288.pdb > /var/tmp/scwrl_1968513288.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1968513288.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1870016512.pdb -s /var/tmp/to_scwrl_1870016512.seq -o /var/tmp/from_scwrl_1870016512.pdb > /var/tmp/scwrl_1870016512.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1870016512.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1843672336.pdb -s /var/tmp/to_scwrl_1843672336.seq -o /var/tmp/from_scwrl_1843672336.pdb > /var/tmp/scwrl_1843672336.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1843672336.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1904391753.pdb -s /var/tmp/to_scwrl_1904391753.seq -o /var/tmp/from_scwrl_1904391753.pdb > /var/tmp/scwrl_1904391753.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904391753.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1774602564.pdb -s /var/tmp/to_scwrl_1774602564.seq -o /var/tmp/from_scwrl_1774602564.pdb > /var/tmp/scwrl_1774602564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1774602564.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1243484783.pdb -s /var/tmp/to_scwrl_1243484783.seq -o /var/tmp/from_scwrl_1243484783.pdb > /var/tmp/scwrl_1243484783.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1243484783.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1662633334.pdb -s /var/tmp/to_scwrl_1662633334.seq -o /var/tmp/from_scwrl_1662633334.pdb > /var/tmp/scwrl_1662633334.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1662633334.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1787169324.pdb -s /var/tmp/to_scwrl_1787169324.seq -o /var/tmp/from_scwrl_1787169324.pdb > /var/tmp/scwrl_1787169324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1787169324.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_364181521.pdb -s /var/tmp/to_scwrl_364181521.seq -o /var/tmp/from_scwrl_364181521.pdb > /var/tmp/scwrl_364181521.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364181521.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2074011529.pdb -s /var/tmp/to_scwrl_2074011529.seq -o /var/tmp/from_scwrl_2074011529.pdb > /var/tmp/scwrl_2074011529.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2074011529.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1083703217.pdb -s /var/tmp/to_scwrl_1083703217.seq -o /var/tmp/from_scwrl_1083703217.pdb > /var/tmp/scwrl_1083703217.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1083703217.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1196792285.pdb -s /var/tmp/to_scwrl_1196792285.seq -o /var/tmp/from_scwrl_1196792285.pdb > /var/tmp/scwrl_1196792285.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1196792285.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_41791166.pdb -s /var/tmp/to_scwrl_41791166.seq -o /var/tmp/from_scwrl_41791166.pdb > /var/tmp/scwrl_41791166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_41791166.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2083336577.pdb -s /var/tmp/to_scwrl_2083336577.seq -o /var/tmp/from_scwrl_2083336577.pdb > /var/tmp/scwrl_2083336577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2083336577.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_215795093.pdb -s /var/tmp/to_scwrl_215795093.seq -o /var/tmp/from_scwrl_215795093.pdb > /var/tmp/scwrl_215795093.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_215795093.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1470127593.pdb -s /var/tmp/to_scwrl_1470127593.seq -o /var/tmp/from_scwrl_1470127593.pdb > /var/tmp/scwrl_1470127593.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1470127593.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1407117142.pdb -s /var/tmp/to_scwrl_1407117142.seq -o /var/tmp/from_scwrl_1407117142.pdb > /var/tmp/scwrl_1407117142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1407117142.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_307125664.pdb -s /var/tmp/to_scwrl_307125664.seq -o /var/tmp/from_scwrl_307125664.pdb > /var/tmp/scwrl_307125664.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_307125664.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_306481934.pdb -s /var/tmp/to_scwrl_306481934.seq -o /var/tmp/from_scwrl_306481934.pdb > /var/tmp/scwrl_306481934.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_306481934.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_923300895.pdb -s /var/tmp/to_scwrl_923300895.seq -o /var/tmp/from_scwrl_923300895.pdb > /var/tmp/scwrl_923300895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_923300895.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1506555082.pdb -s /var/tmp/to_scwrl_1506555082.seq -o /var/tmp/from_scwrl_1506555082.pdb > /var/tmp/scwrl_1506555082.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1506555082.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1278216911.pdb -s /var/tmp/to_scwrl_1278216911.seq -o /var/tmp/from_scwrl_1278216911.pdb > /var/tmp/scwrl_1278216911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1278216911.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_712747713.pdb -s /var/tmp/to_scwrl_712747713.seq -o /var/tmp/from_scwrl_712747713.pdb > /var/tmp/scwrl_712747713.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_712747713.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)D84.O and (T0311)V85.N only 0.000 apart, marking (T0311)V85.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1069314402.pdb -s /var/tmp/to_scwrl_1069314402.seq -o /var/tmp/from_scwrl_1069314402.pdb > /var/tmp/scwrl_1069314402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1069314402.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)V22.O and (T0311)S23.N only 0.000 apart, marking (T0311)S23.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_321621495.pdb -s /var/tmp/to_scwrl_321621495.seq -o /var/tmp/from_scwrl_321621495.pdb > /var/tmp/scwrl_321621495.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_321621495.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_205017848.pdb -s /var/tmp/to_scwrl_205017848.seq -o /var/tmp/from_scwrl_205017848.pdb > /var/tmp/scwrl_205017848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_205017848.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_526051651.pdb -s /var/tmp/to_scwrl_526051651.seq -o /var/tmp/from_scwrl_526051651.pdb > /var/tmp/scwrl_526051651.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_526051651.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1795781955.pdb -s /var/tmp/to_scwrl_1795781955.seq -o /var/tmp/from_scwrl_1795781955.pdb > /var/tmp/scwrl_1795781955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1795781955.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_353355470.pdb -s /var/tmp/to_scwrl_353355470.seq -o /var/tmp/from_scwrl_353355470.pdb > /var/tmp/scwrl_353355470.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_353355470.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2006998843.pdb -s /var/tmp/to_scwrl_2006998843.seq -o /var/tmp/from_scwrl_2006998843.pdb > /var/tmp/scwrl_2006998843.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006998843.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_741430413.pdb -s /var/tmp/to_scwrl_741430413.seq -o /var/tmp/from_scwrl_741430413.pdb > /var/tmp/scwrl_741430413.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_741430413.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_174385111.pdb -s /var/tmp/to_scwrl_174385111.seq -o /var/tmp/from_scwrl_174385111.pdb > /var/tmp/scwrl_174385111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_174385111.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1729531708.pdb -s /var/tmp/to_scwrl_1729531708.seq -o /var/tmp/from_scwrl_1729531708.pdb > /var/tmp/scwrl_1729531708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1729531708.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_437619102.pdb -s /var/tmp/to_scwrl_437619102.seq -o /var/tmp/from_scwrl_437619102.pdb > /var/tmp/scwrl_437619102.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437619102.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2078776864.pdb -s /var/tmp/to_scwrl_2078776864.seq -o /var/tmp/from_scwrl_2078776864.pdb > /var/tmp/scwrl_2078776864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2078776864.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1356650626.pdb -s /var/tmp/to_scwrl_1356650626.seq -o /var/tmp/from_scwrl_1356650626.pdb > /var/tmp/scwrl_1356650626.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1356650626.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1681103885.pdb -s /var/tmp/to_scwrl_1681103885.seq -o /var/tmp/from_scwrl_1681103885.pdb > /var/tmp/scwrl_1681103885.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681103885.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1593926551.pdb -s /var/tmp/to_scwrl_1593926551.seq -o /var/tmp/from_scwrl_1593926551.pdb > /var/tmp/scwrl_1593926551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593926551.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_996336304.pdb -s /var/tmp/to_scwrl_996336304.seq -o /var/tmp/from_scwrl_996336304.pdb > /var/tmp/scwrl_996336304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_996336304.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2045285406.pdb -s /var/tmp/to_scwrl_2045285406.seq -o /var/tmp/from_scwrl_2045285406.pdb > /var/tmp/scwrl_2045285406.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2045285406.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1520454434.pdb -s /var/tmp/to_scwrl_1520454434.seq -o /var/tmp/from_scwrl_1520454434.pdb > /var/tmp/scwrl_1520454434.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1520454434.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2080039522.pdb -s /var/tmp/to_scwrl_2080039522.seq -o /var/tmp/from_scwrl_2080039522.pdb > /var/tmp/scwrl_2080039522.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2080039522.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1094594044.pdb -s /var/tmp/to_scwrl_1094594044.seq -o /var/tmp/from_scwrl_1094594044.pdb > /var/tmp/scwrl_1094594044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1094594044.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1562245600.pdb -s /var/tmp/to_scwrl_1562245600.seq -o /var/tmp/from_scwrl_1562245600.pdb > /var/tmp/scwrl_1562245600.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1562245600.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2015892452.pdb -s /var/tmp/to_scwrl_2015892452.seq -o /var/tmp/from_scwrl_2015892452.pdb > /var/tmp/scwrl_2015892452.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2015892452.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1310389137.pdb -s /var/tmp/to_scwrl_1310389137.seq -o /var/tmp/from_scwrl_1310389137.pdb > /var/tmp/scwrl_1310389137.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1310389137.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 18.2622 sec, elapsed time= 108.432 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -7.80128 shub_TS1 costs 0 real_cost = -9.55795 panther2_TS1-scwrl costs 0 real_cost = 31.3198 panther2_TS1 costs 0 real_cost = 40.9779 nFOLD_TS5-scwrl costs 0 real_cost = -51.4857 nFOLD_TS5 costs 0 real_cost = -20.4201 nFOLD_TS4-scwrl costs 0 real_cost = 26.1449 nFOLD_TS4 costs 0 real_cost = 76.2296 nFOLD_TS3-scwrl costs 0 real_cost = -16.463 nFOLD_TS3 costs 0 real_cost = 31.9404 nFOLD_TS2-scwrl costs 0 real_cost = 70.8743 nFOLD_TS2 costs 0 real_cost = 70.8775 nFOLD_TS1-scwrl costs 0 real_cost = -43.9128 nFOLD_TS1 costs 0 real_cost = 6.60403 mGen-3D_TS1-scwrl costs 0 real_cost = -9.53828 mGen-3D_TS1 costs 0 real_cost = 41.5211 keasar-server_TS5-scwrl costs 0 real_cost = -14.1738 keasar-server_TS5 costs 0 real_cost = -2.42899 keasar-server_TS4-scwrl costs 0 real_cost = 12.5276 keasar-server_TS4 costs 0 real_cost = 28.6567 keasar-server_TS3-scwrl costs 0 real_cost = 0.395141 keasar-server_TS3 costs 0 real_cost = 8.01369 keasar-server_TS2-scwrl costs 0 real_cost = 3.50083 keasar-server_TS2 costs 0 real_cost = 18.3243 keasar-server_TS1-scwrl costs 0 real_cost = -12.6204 keasar-server_TS1 costs 0 real_cost = 8.90295 karypis.srv_TS5-scwrl costs 0 real_cost = -82.5138 karypis.srv_TS5 costs 0 real_cost = -90.5232 karypis.srv_TS4-scwrl costs 0 real_cost = -107.412 karypis.srv_TS4 costs 0 real_cost = -97.9116 karypis.srv_TS3-scwrl costs 0 real_cost = -64.047 karypis.srv_TS3 costs 0 real_cost = -69.1583 karypis.srv_TS2-scwrl costs 0 real_cost = -60.3965 karypis.srv_TS2 costs 0 real_cost = -59.6618 karypis.srv_TS1-scwrl costs 0 real_cost = -77.3697 karypis.srv_TS1 costs 0 real_cost = -72.0014 karypis.srv.4_TS5-scwrl costs 0 real_cost = 238.714 karypis.srv.4_TS5 costs 0 real_cost = 238.714 karypis.srv.4_TS4-scwrl costs 0 real_cost = 180.109 karypis.srv.4_TS4 costs 0 real_cost = 180.109 karypis.srv.4_TS3-scwrl costs 0 real_cost = 193.089 karypis.srv.4_TS3 costs 0 real_cost = 193.089 karypis.srv.4_TS2-scwrl costs 0 real_cost = 244.772 karypis.srv.4_TS2 costs 0 real_cost = 245.359 karypis.srv.4_TS1-scwrl costs 0 real_cost = 163.917 karypis.srv.4_TS1 costs 0 real_cost = 170.288 karypis.srv.2_TS5-scwrl costs 0 real_cost = -24.3896 karypis.srv.2_TS5 costs 0 real_cost = -24.3896 karypis.srv.2_TS4-scwrl costs 0 real_cost = -40.6562 karypis.srv.2_TS4 costs 0 real_cost = -40.6562 karypis.srv.2_TS3-scwrl costs 0 real_cost = -41.4326 karypis.srv.2_TS3 costs 0 real_cost = -41.4326 karypis.srv.2_TS2-scwrl costs 0 real_cost = -32.1774 karypis.srv.2_TS2 costs 0 real_cost = -32.1774 karypis.srv.2_TS1-scwrl costs 0 real_cost = -2.4186 karypis.srv.2_TS1 costs 0 real_cost = -2.35507 gtg_AL5-scwrl costs 0 real_cost = -36.1386 gtg_AL5 costs 0 real_cost = 21.3291 gtg_AL4-scwrl costs 0 real_cost = -116.654 gtg_AL4 costs 0 real_cost = -65.5311 gtg_AL3-scwrl costs 0 real_cost = -9.12744 gtg_AL3 costs 0 real_cost = 44.5083 gtg_AL2-scwrl costs 0 real_cost = -35.3528 gtg_AL2 costs 0 real_cost = 21.9593 gtg_AL1-scwrl costs 0 real_cost = -32.9261 gtg_AL1 costs 0 real_cost = 51.718 forecast-s_AL5-scwrl costs 0 real_cost = 322.28 forecast-s_AL5 costs 0 real_cost = 326.202 forecast-s_AL4-scwrl costs 0 real_cost = -65.5559 forecast-s_AL4 costs 0 real_cost = -30.4419 forecast-s_AL3-scwrl costs 0 real_cost = -25.363 forecast-s_AL3 costs 0 real_cost = 22.0243 forecast-s_AL2-scwrl costs 0 real_cost = 2.47983 forecast-s_AL2 costs 0 real_cost = 54.0084 forecast-s_AL1-scwrl costs 0 real_cost = -96.4671 forecast-s_AL1 costs 0 real_cost = -59.091 beautshotbase_TS1-scwrl costs 0 real_cost = -101.076 beautshotbase_TS1 costs 0 real_cost = -87.6067 beautshot_TS1-scwrl costs 0 real_cost = -27.0708 beautshot_TS1 costs 0 real_cost = -22.3134 Zhang-Server_TS5-scwrl costs 0 real_cost = -101.019 Zhang-Server_TS5 costs 0 real_cost = -98.3677 Zhang-Server_TS4-scwrl costs 0 real_cost = -88.6695 Zhang-Server_TS4 costs 0 real_cost = -80.7003 Zhang-Server_TS3-scwrl costs 0 real_cost = -39.9307 Zhang-Server_TS3 costs 0 real_cost = -29.0906 Zhang-Server_TS2-scwrl costs 0 real_cost = -72.351 Zhang-Server_TS2 costs 0 real_cost = -68.9509 Zhang-Server_TS1-scwrl costs 0 real_cost = -47.9174 Zhang-Server_TS1 costs 0 real_cost = -36.9194 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -104.028 UNI-EID_sfst_AL5 costs 0 real_cost = -61.8794 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -60.1738 UNI-EID_sfst_AL4 costs 0 real_cost = -17.2156 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -50.5931 UNI-EID_sfst_AL3 costs 0 real_cost = -1.69334 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -71.3778 UNI-EID_sfst_AL2 costs 0 real_cost = -29.4504 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -44.4598 UNI-EID_sfst_AL1 costs 0 real_cost = -7.31771 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -3.38293 UNI-EID_expm_TS1 costs 0 real_cost = 36.6796 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -50.9795 UNI-EID_bnmx_TS5 costs 0 real_cost = 8.04909 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = 2.44029 UNI-EID_bnmx_TS4 costs 0 real_cost = 63.4323 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -50.5931 UNI-EID_bnmx_TS3 costs 0 real_cost = -1.69334 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -51.7698 UNI-EID_bnmx_TS2 costs 0 real_cost = -13.1818 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -13.5578 UNI-EID_bnmx_TS1 costs 0 real_cost = 59.3525 SPARKS2_TS5-scwrl costs 0 real_cost = -10.7589 SPARKS2_TS5 costs 0 real_cost = -4.66112 SPARKS2_TS4-scwrl costs 0 real_cost = -16.946 SPARKS2_TS4 costs 0 real_cost = -7.54621 SPARKS2_TS3-scwrl costs 0 real_cost = -22.2699 SPARKS2_TS3 costs 0 real_cost = -7.66156 SPARKS2_TS2-scwrl costs 0 real_cost = 25.0502 SPARKS2_TS2 costs 0 real_cost = 18.6372 SPARKS2_TS1-scwrl costs 0 real_cost = -24.577 SPARKS2_TS1 costs 0 real_cost = -15.9724 SP4_TS5-scwrl costs 0 real_cost = -24.577 SP4_TS5 costs 0 real_cost = -15.9724 SP4_TS4-scwrl costs 0 real_cost = -22.2699 SP4_TS4 costs 0 real_cost = -7.66156 SP4_TS3-scwrl costs 0 real_cost = -11.3525 SP4_TS3 costs 0 real_cost = -3.1707 SP4_TS2-scwrl costs 0 real_cost = -3.54789 SP4_TS2 costs 0 real_cost = 8.42742 SP4_TS1-scwrl costs 0 real_cost = -19.3054 SP4_TS1 costs 0 real_cost = -8.23609 SP3_TS5-scwrl costs 0 real_cost = -42.3469 SP3_TS5 costs 0 real_cost = -30.8198 SP3_TS4-scwrl costs 0 real_cost = -24.577 SP3_TS4 costs 0 real_cost = -15.9724 SP3_TS3-scwrl costs 0 real_cost = -22.2699 SP3_TS3 costs 0 real_cost = -7.66156 SP3_TS2-scwrl costs 0 real_cost = -35.9004 SP3_TS2 costs 0 real_cost = -26.5866 SP3_TS1-scwrl costs 0 real_cost = -3.54789 SP3_TS1 costs 0 real_cost = 8.42742 SAM_T06_server_TS5-scwrl costs 0 real_cost = -44.9522 SAM_T06_server_TS5 costs 0 real_cost = -51.2526 SAM_T06_server_TS4-scwrl costs 0 real_cost = 18.7992 SAM_T06_server_TS4 costs 0 real_cost = 5.74755 SAM_T06_server_TS3-scwrl costs 0 real_cost = -42.7934 SAM_T06_server_TS3 costs 0 real_cost = -55.8403 SAM_T06_server_TS2-scwrl costs 0 real_cost = -86.1839 SAM_T06_server_TS2 costs 0 real_cost = -98.7296 SAM_T06_server_TS1-scwrl costs 0 real_cost = -78.3508 SAM_T06_server_TS1 costs 0 real_cost = -82.7011 SAM-T99_AL5-scwrl costs 0 real_cost = -40.9257 SAM-T99_AL5 costs 0 real_cost = -29.6913 SAM-T99_AL4-scwrl costs 0 real_cost = -91.0726 SAM-T99_AL4 costs 0 real_cost = -61.5174 SAM-T99_AL3-scwrl costs 0 real_cost = -96.7143 SAM-T99_AL3 costs 0 real_cost = -64.5887 SAM-T99_AL2-scwrl costs 0 real_cost = -92.4556 SAM-T99_AL2 costs 0 real_cost = -62.5428 SAM-T99_AL1-scwrl costs 0 real_cost = -36.1061 SAM-T99_AL1 costs 0 real_cost = -7.7217 SAM-T02_AL5-scwrl costs 0 real_cost = -67.495 SAM-T02_AL5 costs 0 real_cost = -57.2482 SAM-T02_AL4-scwrl costs 0 real_cost = -69.4578 SAM-T02_AL4 costs 0 real_cost = -49.9794 SAM-T02_AL3-scwrl costs 0 real_cost = 2.38381 SAM-T02_AL3 costs 0 real_cost = 23.297 SAM-T02_AL2-scwrl costs 0 real_cost = -78.4738 SAM-T02_AL2 costs 0 real_cost = -54.7297 SAM-T02_AL1-scwrl costs 0 real_cost = -42.5048 SAM-T02_AL1 costs 0 real_cost = -24.2478 ROKKY_TS5-scwrl costs 0 real_cost = -52.89 ROKKY_TS5 costs 0 real_cost = -51.1011 ROKKY_TS4-scwrl costs 0 real_cost = -43.8801 ROKKY_TS4 costs 0 real_cost = -38.3762 ROKKY_TS3-scwrl costs 0 real_cost = -40.3796 ROKKY_TS3 costs 0 real_cost = -20.4088 ROKKY_TS2-scwrl costs 0 real_cost = -51.8365 ROKKY_TS2 costs 0 real_cost = -49.7758 ROKKY_TS1-scwrl costs 0 real_cost = -43.6215 ROKKY_TS1 costs 0 real_cost = -37.261 ROBETTA_TS5-scwrl costs 0 real_cost = -37.1341 ROBETTA_TS5 costs 0 real_cost = -33.4369 ROBETTA_TS4-scwrl costs 0 real_cost = -29.8489 ROBETTA_TS4 costs 0 real_cost = -27.5306 ROBETTA_TS3-scwrl costs 0 real_cost = -20.2065 ROBETTA_TS3 costs 0 real_cost = -16.3552 ROBETTA_TS2-scwrl costs 0 real_cost = -7.98077 ROBETTA_TS2 costs 0 real_cost = -1.41175 ROBETTA_TS1-scwrl costs 0 real_cost = -6.10485 ROBETTA_TS1 costs 0 real_cost = 2.62068 RAPTOR_TS5-scwrl costs 0 real_cost = 53.9452 RAPTOR_TS5 costs 0 real_cost = 56.8563 RAPTOR_TS4-scwrl costs 0 real_cost = -72.8618 RAPTOR_TS4 costs 0 real_cost = -66.3414 RAPTOR_TS3-scwrl costs 0 real_cost = -36.6013 RAPTOR_TS3 costs 0 real_cost = -27.9471 RAPTOR_TS2-scwrl costs 0 real_cost = 37.052 RAPTOR_TS2 costs 0 real_cost = 42.4988 RAPTOR_TS1-scwrl costs 0 real_cost = -46.5226 RAPTOR_TS1 costs 0 real_cost = -38.0204 RAPTORESS_TS5-scwrl costs 0 real_cost = 113.178 RAPTORESS_TS5 costs 0 real_cost = 125.371 RAPTORESS_TS4-scwrl costs 0 real_cost = -48.1067 RAPTORESS_TS4 costs 0 real_cost = -40.8816 RAPTORESS_TS3-scwrl costs 0 real_cost = -24.4852 RAPTORESS_TS3 costs 0 real_cost = -10.4847 RAPTORESS_TS2-scwrl costs 0 real_cost = 55.0205 RAPTORESS_TS2 costs 0 real_cost = 61.8316 RAPTORESS_TS1-scwrl costs 0 real_cost = -37.8905 RAPTORESS_TS1 costs 0 real_cost = -28.8193 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -35.9004 RAPTOR-ACE_TS5 costs 0 real_cost = -26.5866 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = 1.67132 RAPTOR-ACE_TS4 costs 0 real_cost = 3.63661 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -48.5146 RAPTOR-ACE_TS3 costs 0 real_cost = -37.6571 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = 36.6319 RAPTOR-ACE_TS2 costs 0 real_cost = 31.5424 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -33.0978 RAPTOR-ACE_TS1 costs 0 real_cost = -20.6682 Pmodeller6_TS5-scwrl costs 0 real_cost = -127.497 Pmodeller6_TS5 costs 0 real_cost = -130.611 Pmodeller6_TS4-scwrl costs 0 real_cost = -37.1341 Pmodeller6_TS4 costs 0 real_cost = -33.4369 Pmodeller6_TS3-scwrl costs 0 real_cost = -68.5328 Pmodeller6_TS3 costs 0 real_cost = -70.2125 Pmodeller6_TS2-scwrl costs 0 real_cost = -93.3474 Pmodeller6_TS2 costs 0 real_cost = -104.245 Pmodeller6_TS1-scwrl costs 0 real_cost = -129.559 Pmodeller6_TS1 costs 0 real_cost = -131.533 Phyre-2_TS5-scwrl costs 0 real_cost = -53.0857 Phyre-2_TS5 costs 0 real_cost = -50.0219 Phyre-2_TS4-scwrl costs 0 real_cost = -39.1941 Phyre-2_TS4 costs 0 real_cost = -43.8709 Phyre-2_TS3-scwrl costs 0 real_cost = -53.0857 Phyre-2_TS3 costs 0 real_cost = -50.0219 Phyre-2_TS2-scwrl costs 0 real_cost = -53.0857 Phyre-2_TS2 costs 0 real_cost = -50.0219 Phyre-2_TS1-scwrl costs 0 real_cost = -34.2061 Phyre-2_TS1 costs 0 real_cost = -36.7624 Phyre-1_TS1-scwrl costs 0 real_cost = -60.1272 Phyre-1_TS1 costs 0 real_cost = -52.908 Pcons6_TS5-scwrl costs 0 real_cost = -83.4312 Pcons6_TS5 costs 0 real_cost = -94.1557 Pcons6_TS4-scwrl costs 0 real_cost = -114.824 Pcons6_TS4 costs 0 real_cost = -121.615 Pcons6_TS3-scwrl costs 0 real_cost = -99.9777 Pcons6_TS3 costs 0 real_cost = -100.2 Pcons6_TS2-scwrl costs 0 real_cost = -108.932 Pcons6_TS2 costs 0 real_cost = -116.696 Pcons6_TS1-scwrl costs 0 real_cost = -80.4968 Pcons6_TS1 costs 0 real_cost = -94.0716 PROTINFO_TS5-scwrl costs 0 real_cost = -104.992 PROTINFO_TS5 costs 0 real_cost = -91.4164 PROTINFO_TS4-scwrl costs 0 real_cost = 59.5454 PROTINFO_TS4 costs 0 real_cost = 56.5506 PROTINFO_TS3-scwrl costs 0 real_cost = -30.7103 PROTINFO_TS3 costs 0 real_cost = -29.1339 PROTINFO_TS2-scwrl costs 0 real_cost = -38.5205 PROTINFO_TS2 costs 0 real_cost = -32.427 PROTINFO_TS1-scwrl costs 0 real_cost = -79.1187 PROTINFO_TS1 costs 0 real_cost = -77.8504 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -79.1187 PROTINFO-AB_TS5 costs 0 real_cost = -77.8504 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 116.656 PROTINFO-AB_TS4 costs 0 real_cost = 121.549 PROTINFO-AB_TS3-scwrl costs 0 real_cost = 35.4657 PROTINFO-AB_TS3 costs 0 real_cost = 38.3386 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 110.447 PROTINFO-AB_TS2 costs 0 real_cost = 114.742 PROTINFO-AB_TS1-scwrl costs 0 real_cost = 27.2757 PROTINFO-AB_TS1 costs 0 real_cost = 39.2105 POMYSL_TS5-scwrl costs 0 real_cost = 191.989 POMYSL_TS5 costs 0 real_cost = 206.886 POMYSL_TS4-scwrl costs 0 real_cost = 249.244 POMYSL_TS4 costs 0 real_cost = 257.949 POMYSL_TS3-scwrl costs 0 real_cost = 183.51 POMYSL_TS3 costs 0 real_cost = 219.914 POMYSL_TS2-scwrl costs 0 real_cost = 206.154 POMYSL_TS2 costs 0 real_cost = 196.008 POMYSL_TS1-scwrl costs 0 real_cost = 184.323 POMYSL_TS1 costs 0 real_cost = 179.949 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -105.455 NN_PUT_lab_TS1 costs 0 real_cost = -103.863 MetaTasser_TS5-scwrl costs 0 real_cost = -2.63605 MetaTasser_TS5 costs 0 real_cost = 15.6895 MetaTasser_TS4-scwrl costs 0 real_cost = 6.08972 MetaTasser_TS4 costs 0 real_cost = 11.6702 MetaTasser_TS3-scwrl costs 0 real_cost = 21.3578 MetaTasser_TS3 costs 0 real_cost = 19.6309 MetaTasser_TS2-scwrl costs 0 real_cost = 4.517 MetaTasser_TS2 costs 0 real_cost = 0.288988 MetaTasser_TS1-scwrl costs 0 real_cost = 45.9821 MetaTasser_TS1 costs 0 real_cost = 39.7166 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = 7.79169 Ma-OPUS-server_TS5 costs 0 real_cost = 14.6856 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = 3.10396 Ma-OPUS-server_TS4 costs 0 real_cost = 22.746 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -22.4578 Ma-OPUS-server_TS3 costs 0 real_cost = -21.5099 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = 0.511465 Ma-OPUS-server_TS2 costs 0 real_cost = 12.6989 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 196.848 Ma-OPUS-server_TS1 costs 0 real_cost = 205.833 MIG_FROST_AL1-scwrl costs 0 real_cost = 130.855 MIG_FROST_AL1 costs 0 real_cost = 153.883 LOOPP_TS5-scwrl costs 0 real_cost = -51.9104 LOOPP_TS5 costs 0 real_cost = -56.7258 LOOPP_TS4-scwrl costs 0 real_cost = 51.6437 LOOPP_TS4 costs 0 real_cost = 49.0317 LOOPP_TS3-scwrl costs 0 real_cost = 22.3125 LOOPP_TS3 costs 0 real_cost = 21.31 LOOPP_TS2-scwrl costs 0 real_cost = 1.2173 LOOPP_TS2 costs 0 real_cost = 13.5394 LOOPP_TS1-scwrl costs 0 real_cost = -105.455 LOOPP_TS1 costs 0 real_cost = -103.863 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 317.711 Huber-Torda-Server_TS5 costs 0 real_cost = 334.413 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = 88.1439 Huber-Torda-Server_TS4 costs 0 real_cost = 108.893 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = 57.4694 Huber-Torda-Server_TS3 costs 0 real_cost = 73.1574 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -11.1912 Huber-Torda-Server_TS2 costs 0 real_cost = 5.97884 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -53.0857 Huber-Torda-Server_TS1 costs 0 real_cost = -20.4174 HHpred3_TS1-scwrl costs 0 real_cost = -11.4817 HHpred3_TS1 costs 0 real_cost = -8.76535 HHpred2_TS1-scwrl costs 0 real_cost = -11.4817 HHpred2_TS1 costs 0 real_cost = -8.76535 HHpred1_TS1-scwrl costs 0 real_cost = 21.4101 HHpred1_TS1 costs 0 real_cost = 21.4517 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = 37.4949 GeneSilicoMetaServer_TS5 costs 0 real_cost = 37.9519 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -18.9684 GeneSilicoMetaServer_TS4 costs 0 real_cost = -5.19772 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = 29.5533 GeneSilicoMetaServer_TS3 costs 0 real_cost = 32.9399 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -10.2808 GeneSilicoMetaServer_TS2 costs 0 real_cost = -7.31785 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -27.2434 GeneSilicoMetaServer_TS1 costs 0 real_cost = -17.9906 FUNCTION_TS5-scwrl costs 0 real_cost = -20.4813 FUNCTION_TS5 costs 0 real_cost = -12.7428 FUNCTION_TS4-scwrl costs 0 real_cost = -54.9141 FUNCTION_TS4 costs 0 real_cost = -62.9586 FUNCTION_TS3-scwrl costs 0 real_cost = 6.50949 FUNCTION_TS3 costs 0 real_cost = 18.0311 FUNCTION_TS2-scwrl costs 0 real_cost = -26.6457 FUNCTION_TS2 costs 0 real_cost = -19.7457 FUNCTION_TS1-scwrl costs 0 real_cost = -67.5826 FUNCTION_TS1 costs 0 real_cost = -59.4422 FUGUE_AL5-scwrl costs 0 real_cost = 2.97141 FUGUE_AL5 costs 0 real_cost = 64.9921 FUGUE_AL4-scwrl costs 0 real_cost = 82.5843 FUGUE_AL4 costs 0 real_cost = 82.5843 FUGUE_AL3-scwrl costs 0 real_cost = 0.570017 FUGUE_AL3 costs 0 real_cost = 47.9757 FUGUE_AL2-scwrl costs 0 real_cost = -36.6631 FUGUE_AL2 costs 0 real_cost = 19.8679 FUGUE_AL1-scwrl costs 0 real_cost = -51.0734 FUGUE_AL1 costs 0 real_cost = 2.74622 FUGMOD_TS5-scwrl costs 0 real_cost = 4.10832 FUGMOD_TS5 costs 0 real_cost = 15.5196 FUGMOD_TS4-scwrl costs 0 real_cost = 7.39542 FUGMOD_TS4 costs 0 real_cost = 4.46204 FUGMOD_TS3-scwrl costs 0 real_cost = -38.6017 FUGMOD_TS3 costs 0 real_cost = -10.55 FUGMOD_TS2-scwrl costs 0 real_cost = -36.7633 FUGMOD_TS2 costs 0 real_cost = -30.3962 FUGMOD_TS1-scwrl costs 0 real_cost = -52.5284 FUGMOD_TS1 costs 0 real_cost = -43.034 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 242.853 FPSOLVER-SERVER_TS5 costs 0 real_cost = 237.743 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 288.834 FPSOLVER-SERVER_TS4 costs 0 real_cost = 282.617 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 280.566 FPSOLVER-SERVER_TS3 costs 0 real_cost = 274.664 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 260.468 FPSOLVER-SERVER_TS2 costs 0 real_cost = 262.092 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 265.061 FPSOLVER-SERVER_TS1 costs 0 real_cost = 265.013 FORTE2_AL5-scwrl costs 0 real_cost = -6.74158 FORTE2_AL5 costs 0 real_cost = 54.6057 FORTE2_AL4-scwrl costs 0 real_cost = -30.3396 FORTE2_AL4 costs 0 real_cost = 34.367 FORTE2_AL3-scwrl costs 0 real_cost = 96.3958 FORTE2_AL3 costs 0 real_cost = 96.3958 FORTE2_AL2-scwrl costs 0 real_cost = -43.9128 FORTE2_AL2 costs 0 real_cost = 22.5086 FORTE2_AL1-scwrl costs 0 real_cost = 2.97141 FORTE2_AL1 costs 0 real_cost = 64.9921 FORTE1_AL5-scwrl costs 0 real_cost = -117.95 FORTE1_AL5 costs 0 real_cost = -58.3753 FORTE1_AL4-scwrl costs 0 real_cost = -6.74158 FORTE1_AL4 costs 0 real_cost = 54.6057 FORTE1_AL3-scwrl costs 0 real_cost = -43.9128 FORTE1_AL3 costs 0 real_cost = 22.5086 FORTE1_AL2-scwrl costs 0 real_cost = 96.3958 FORTE1_AL2 costs 0 real_cost = 96.3958 FORTE1_AL1-scwrl costs 0 real_cost = 2.97141 FORTE1_AL1 costs 0 real_cost = 64.9921 FOLDpro_TS5-scwrl costs 0 real_cost = -19.8129 FOLDpro_TS5 costs 0 real_cost = -14.6193 FOLDpro_TS4-scwrl costs 0 real_cost = 9.29393 FOLDpro_TS4 costs 0 real_cost = 21.7444 FOLDpro_TS3-scwrl costs 0 real_cost = -128.681 FOLDpro_TS3 costs 0 real_cost = -124.963 FOLDpro_TS2-scwrl costs 0 real_cost = 16.2555 FOLDpro_TS2 costs 0 real_cost = 21.8995 FOLDpro_TS1-scwrl costs 0 real_cost = -99.671 FOLDpro_TS1 costs 0 real_cost = -93.8699 FAMS_TS5-scwrl costs 0 real_cost = -6.35487 FAMS_TS5 costs 0 real_cost = -6.34034 FAMS_TS4-scwrl costs 0 real_cost = -75.9537 FAMS_TS4 costs 0 real_cost = -65.8967 FAMS_TS3-scwrl costs 0 real_cost = -79.4641 FAMS_TS3 costs 0 real_cost = -78.9164 FAMS_TS2-scwrl costs 0 real_cost = -57.6084 FAMS_TS2 costs 0 real_cost = -58.7972 FAMS_TS1-scwrl costs 0 real_cost = -15.5093 FAMS_TS1 costs 0 real_cost = -11.2962 FAMSD_TS5-scwrl costs 0 real_cost = 1.98922 FAMSD_TS5 costs 0 real_cost = 13.4709 FAMSD_TS4-scwrl costs 0 real_cost = -41.5551 FAMSD_TS4 costs 0 real_cost = -38.6389 FAMSD_TS3-scwrl costs 0 real_cost = -68.4228 FAMSD_TS3 costs 0 real_cost = -60.8596 FAMSD_TS2-scwrl costs 0 real_cost = -21.1236 FAMSD_TS2 costs 0 real_cost = -13.3477 FAMSD_TS1-scwrl costs 0 real_cost = -25.6103 FAMSD_TS1 costs 0 real_cost = -6.95834 Distill_TS5-scwrl costs 0 real_cost = 283.933 Distill_TS4-scwrl costs 0 real_cost = 290.824 Distill_TS3-scwrl costs 0 real_cost = 282.706 Distill_TS2-scwrl costs 0 real_cost = 290.834 Distill_TS1-scwrl costs 0 real_cost = 284.705 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 144.001 CaspIta-FOX_TS5 costs 0 real_cost = 142.8 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -15.6731 CaspIta-FOX_TS4 costs 0 real_cost = 7.3693 CaspIta-FOX_TS3-scwrl costs 0 real_cost = 36.6772 CaspIta-FOX_TS3 costs 0 real_cost = 34.4162 CaspIta-FOX_TS2-scwrl costs 0 real_cost = 92.2184 CaspIta-FOX_TS2 costs 0 real_cost = 86.9528 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -51.8167 CaspIta-FOX_TS1 costs 0 real_cost = -37.0041 CPHmodels_TS1-scwrl costs 0 real_cost = 15.2792 CPHmodels_TS1 costs 0 real_cost = 10.3739 CIRCLE_TS5-scwrl costs 0 real_cost = -6.35487 CIRCLE_TS5 costs 0 real_cost = -6.34034 CIRCLE_TS4-scwrl costs 0 real_cost = -54.1362 CIRCLE_TS4 costs 0 real_cost = -45.6579 CIRCLE_TS3-scwrl costs 0 real_cost = -75.9537 CIRCLE_TS3 costs 0 real_cost = -65.8967 CIRCLE_TS2-scwrl costs 0 real_cost = -79.4641 CIRCLE_TS2 costs 0 real_cost = -78.9164 CIRCLE_TS1-scwrl costs 0 real_cost = -57.6084 CIRCLE_TS1 costs 0 real_cost = -58.7972 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -34.7992 Bilab-ENABLE_TS5 costs 0 real_cost = -34.7992 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -34.8707 Bilab-ENABLE_TS4 costs 0 real_cost = -34.8707 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -3.94918 Bilab-ENABLE_TS3 costs 0 real_cost = -3.94918 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -32.0733 Bilab-ENABLE_TS2 costs 0 real_cost = -32.0733 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -39.6969 Bilab-ENABLE_TS1 costs 0 real_cost = -39.6969 BayesHH_TS1-scwrl costs 0 real_cost = 131.794 BayesHH_TS1 costs 0 real_cost = 153.634 ABIpro_TS5-scwrl costs 0 real_cost = 133.608 ABIpro_TS5 costs 0 real_cost = 133.608 ABIpro_TS4-scwrl costs 0 real_cost = 77.1714 ABIpro_TS4 costs 0 real_cost = 77.1714 ABIpro_TS3-scwrl costs 0 real_cost = 137.15 ABIpro_TS3 costs 0 real_cost = 137.15 ABIpro_TS2-scwrl costs 0 real_cost = 148.701 ABIpro_TS2 costs 0 real_cost = 148.683 ABIpro_TS1-scwrl costs 0 real_cost = 157.494 ABIpro_TS1 costs 0 real_cost = 157.494 3Dpro_TS5-scwrl costs 0 real_cost = -112.083 3Dpro_TS5 costs 0 real_cost = -97.2899 3Dpro_TS4-scwrl costs 0 real_cost = -61.4801 3Dpro_TS4 costs 0 real_cost = -56.2116 3Dpro_TS3-scwrl costs 0 real_cost = 14.3305 3Dpro_TS3 costs 0 real_cost = 16.8231 3Dpro_TS2-scwrl costs 0 real_cost = 26.8559 3Dpro_TS2 costs 0 real_cost = 35.4435 3Dpro_TS1-scwrl costs 0 real_cost = -49.8367 3Dpro_TS1 costs 0 real_cost = -38.0674 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -81.6919 3D-JIGSAW_TS5 costs 0 real_cost = -60.2524 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -6.21656 3D-JIGSAW_TS4 costs 0 real_cost = -6.52254 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -77.5128 3D-JIGSAW_TS3 costs 0 real_cost = -67.6434 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -35.6132 3D-JIGSAW_TS2 costs 0 real_cost = -29.6335 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -34.5566 3D-JIGSAW_TS1 costs 0 real_cost = -28.3871 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -70.6916 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -49.215 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = 17.8299 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = 19.0828 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -50.4465 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -41.8937 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -62.712 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -45.0998 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -27.902 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -19.116 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = 6.56497 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = 1.42682 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -44.6847 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -45.6451 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -35.0481 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -38.4407 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = 25.6225 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = 25.4049 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = 3.30952 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -0.188821 dimer//try8MoveCtermOutTake2.renum costs 0 real_cost = -51.7092 dimer//dimer-2b5aA costs 0 real_cost = -51.6627 dimer//dimer-1utxA costs 0 real_cost = -51.7665 try8MoveCtermOutTake2.renum.pdb.gz costs 0 real_cost = -51.7092 helixDownFromTry6.renum.pdb.gz costs 0 real_cost = -114.145 fromTry4breakatS75.renum.pdb.gz costs 0 real_cost = -71.4908 fromTry1cTermRotAndCap.renum.pdb.gz costs 0 real_cost = -72.5399 T0311.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -103.249 T0311.try9-opt2.pdb.gz costs 0 real_cost = -103.211 T0311.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = -101.754 T0311.try9-opt1.pdb.gz costs 0 real_cost = -107.505 T0311.try9-opt1-scwrl.pdb.gz costs 0 real_cost = -104.602 T0311.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -114.962 T0311.try8-opt2.pdb.gz costs 0 real_cost = -118.696 T0311.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -103.596 T0311.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = -111.272 T0311.try8-opt1.pdb.gz costs 0 real_cost = -121.362 T0311.try8-opt1-scwrl.pdb.gz costs 0 real_cost = -116.776 T0311.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -86.1893 T0311.try7-opt2.pdb.gz costs 0 real_cost = -90.8833 T0311.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -90.4172 T0311.try7-opt1.pdb.gz costs 0 real_cost = -93.688 T0311.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -92.2955 T0311.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -122.319 T0311.try6-opt2.pdb.gz costs 0 real_cost = -124.753 T0311.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -119.608 T0311.try6-opt1.pdb.gz costs 0 real_cost = -120.981 T0311.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -113.892 T0311.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -81.1513 T0311.try5-opt2.pdb.gz costs 0 real_cost = -83.7857 T0311.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -80.0219 T0311.try5-opt1.pdb.gz costs 0 real_cost = -77.1649 T0311.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -75.6511 T0311.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -103.412 T0311.try4-opt2.pdb.gz costs 0 real_cost = -100.647 T0311.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -100.492 T0311.try4-opt1.pdb.gz costs 0 real_cost = -100.826 T0311.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -101.529 T0311.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -115.236 T0311.try3-opt2.pdb.gz costs 0 real_cost = -119.96 T0311.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -118.709 T0311.try3-opt1.pdb.gz costs 0 real_cost = -117.427 T0311.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -113.689 T0311.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -103.17 T0311.try2-opt2.pdb.gz costs 0 real_cost = -100.685 T0311.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -98.5051 T0311.try2-opt1.pdb.gz costs 0 real_cost = -105.776 T0311.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -102.361 T0311.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -111.932 T0311.try12-opt2.pdb.gz costs 0 real_cost = -114.532 T0311.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -108.363 T0311.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = -109.555 T0311.try12-opt1.pdb.gz costs 0 real_cost = -116.163 T0311.try12-opt1-scwrl.pdb.gz costs 0 real_cost = -114.018 T0311.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -108.623 T0311.try11-opt2.pdb.gz costs 0 real_cost = -115.098 T0311.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -107.679 T0311.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = -111.825 T0311.try11-opt1.pdb.gz costs 0 real_cost = -113.998 T0311.try11-opt1-scwrl.pdb.gz costs 0 real_cost = -113 T0311.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -114.969 T0311.try10-opt2.pdb.gz costs 0 real_cost = -119.024 T0311.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -109.761 T0311.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = -112.356 T0311.try10-opt1.pdb.gz costs 0 real_cost = -120.25 T0311.try10-opt1-scwrl.pdb.gz costs 0 real_cost = -113.304 T0311.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -72.7059 T0311.try1-opt2.pdb.gz costs 0 real_cost = -75.9947 T0311.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -73.6206 T0311.try1-opt1.pdb.gz costs 0 real_cost = -78.3179 T0311.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -74.553 ../model5.ts-submitted costs 0 real_cost = -124.75 ../model4.ts-submitted costs 0 real_cost = -103.245 ../model3.ts-submitted costs 0 real_cost = -83.7792 ../model2.ts-submitted costs 0 real_cost = -108.348 ../model1.ts-submitted costs 0 real_cost = -114.401 align5 costs 0 real_cost = -4.64647 align4 costs 0 real_cost = -10.9181 align3 costs 0 real_cost = -51.5422 align2 costs 0 real_cost = -97.6694 align1 costs 0 real_cost = -52.3578 T0311.try1-opt2.pdb costs 0 real_cost = -75.9947 model5-scwrl costs 0 real_cost = -116.617 model5.ts-submitted costs 0 real_cost = -124.75 model4-scwrl costs 0 real_cost = -101.486 model4.ts-submitted costs 0 real_cost = -103.245 model3-scwrl costs 0 real_cost = -77.5233 model3.ts-submitted costs 0 real_cost = -83.7792 model2-scwrl costs 0 real_cost = -110.319 model2.ts-submitted costs 0 real_cost = -108.348 model1-scwrl costs 0 real_cost = -114.853 model1.ts-submitted costs 0 real_cost = -114.4 2icpA costs 0 real_cost = -880 # command:CPU_time= 112.621 sec, elapsed time= 204.736 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.rdb mv -f decoys/evaluate.pretty decoys/evaluate.pretty.old mv: cannot stat `decoys/evaluate.pretty': No such file or directory make: [decoys/evaluate.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.rdb > decoys/evaluate.pretty rm -f decoys/evaluate_1.rdb sed -e s/XXX0000/T0311/ -e s/START_COL/1/ \ -e s/REAL_PDB/2icpA/ \ -e s/_domain/_1/ \ -e s/read-pdb/read-pdb+servers/ \ -e 's/ReadConformPDBids/# ReadConformPDBids/' \ -e 's/# ReadConformPDB /ReadConformPDB /' \ -e 's/include COSTFCN.costfcn//' \ -e s/.COSTFCN// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /projects/compbio/programs/undertaker/undertaker # command:# Seed set to 1175292227 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # trans (non-proline) backbone unit: # CA= -2.2088 1.0126 -0.0031 # O= -0.1499 2.2440 0.0017 # C= -0.6889 1.1368 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4581 0.0000 0.0000 # cis backbone unit: # CA= -0.1462 2.4515 0.0018 # O= -2.0272 0.9713 0.0022 # C= -0.8006 1.0755 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4659 0.0000 0.0000 # trans backbone unit before proline: # CA= -2.2099 1.0634 -0.0014 # O= -0.1233 2.2459 0.0075 # C= -0.6871 1.1518 0.0000 # N+1= 0.0000 0.0000 0.0000 # CA+1= 1.4660 0.0000 0.0000 # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 4.5983 sec, elapsed time= 4.63668 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 4.66029 sec, elapsed time= 4.71356 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0311 numbered 1 through 97 Created new target T0311 from T0311.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:# ReadConformPDB reading from PDB file T0311_1.real.pdb looking for model 1 Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M Bad short name: MSE for alphabet: ExtAA Replacing MSE with M # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:CPU_time= 6.50801 sec, elapsed time= 6.57571 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # choosing archetypes in rotamer library # Found a chain break before 94 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -84.7656 # GDT_score(maxd=8,maxw=2.9)= -87.3729 # GDT_score(maxd=8,maxw=3.2)= -84.6881 # GDT_score(maxd=8,maxw=3.5)= -81.5638 # GDT_score(maxd=10,maxw=3.8)= -83.3441 # GDT_score(maxd=10,maxw=4)= -81.1826 # GDT_score(maxd=10,maxw=4.2)= -78.9804 # GDT_score(maxd=12,maxw=4.3)= -81.9581 # GDT_score(maxd=12,maxw=4.5)= -79.817 # GDT_score(maxd=12,maxw=4.7)= -77.6668 # GDT_score(maxd=14,maxw=5.2)= -75.7664 # GDT_score(maxd=14,maxw=5.5)= -72.6368 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 7.4200000e+02 rmsd (weighted)= 2.4704910e+00 (unweighted)= 4.0868091e+01 superimposing iter= 1 total_weight= 1.6229900e+03 rmsd (weighted)= 1.2427301e+00 (unweighted)= 4.0951643e+01 superimposing iter= 2 total_weight= 7.4335136e+02 rmsd (weighted)= 9.6724786e-01 (unweighted)= 4.0967706e+01 superimposing iter= 3 total_weight= 5.9241285e+02 rmsd (weighted)= 8.5491986e-01 (unweighted)= 4.0976052e+01 superimposing iter= 4 total_weight= 6.2144861e+02 rmsd (weighted)= 7.3783497e-01 (unweighted)= 4.0983407e+01 superimposing iter= 5 total_weight= 6.4887981e+02 rmsd (weighted)= 6.2833935e-01 (unweighted)= 4.0988550e+01 # command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_70431280.pdb -s /var/tmp/to_scwrl_70431280.seq -o /var/tmp/from_scwrl_70431280.pdb > /var/tmp/scwrl_70431280.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_70431280.pdb # conformation set from SCWRL output # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # command:# fraction of real conformation used = 1 # GDT_score = -84.7656 # GDT_score(maxd=8,maxw=2.9)= -87.4202 # GDT_score(maxd=8,maxw=3.2)= -84.7869 # GDT_score(maxd=8,maxw=3.5)= -81.6125 # GDT_score(maxd=10,maxw=3.8)= -83.3942 # GDT_score(maxd=10,maxw=4)= -81.2111 # GDT_score(maxd=10,maxw=4.2)= -79.051 # GDT_score(maxd=12,maxw=4.3)= -81.9847 # GDT_score(maxd=12,maxw=4.5)= -79.8884 # GDT_score(maxd=12,maxw=4.7)= -77.7944 # GDT_score(maxd=14,maxw=5.2)= -75.968 # GDT_score(maxd=14,maxw=5.5)= -72.8809 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1886341377.pdb -s /var/tmp/to_scwrl_1886341377.seq -o /var/tmp/from_scwrl_1886341377.pdb > /var/tmp/scwrl_1886341377.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1886341377.pdb # conformation set from SCWRL output # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -83.2031 # GDT_score(maxd=8,maxw=2.9)= -87.0543 # GDT_score(maxd=8,maxw=3.2)= -84.1851 # GDT_score(maxd=8,maxw=3.5)= -80.6343 # GDT_score(maxd=10,maxw=3.8)= -82.5148 # GDT_score(maxd=10,maxw=4)= -80.2867 # GDT_score(maxd=10,maxw=4.2)= -78.093 # GDT_score(maxd=12,maxw=4.3)= -81.1114 # GDT_score(maxd=12,maxw=4.5)= -78.9739 # GDT_score(maxd=12,maxw=4.7)= -76.7137 # GDT_score(maxd=14,maxw=5.2)= -74.6993 # GDT_score(maxd=14,maxw=5.5)= -71.5047 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_15009721.pdb -s /var/tmp/to_scwrl_15009721.seq -o /var/tmp/from_scwrl_15009721.pdb > /var/tmp/scwrl_15009721.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_15009721.pdb # conformation set from SCWRL output # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -83.9844 # GDT_score(maxd=8,maxw=2.9)= -87.1146 # GDT_score(maxd=8,maxw=3.2)= -84.562 # GDT_score(maxd=8,maxw=3.5)= -81.2285 # GDT_score(maxd=10,maxw=3.8)= -83.053 # GDT_score(maxd=10,maxw=4)= -80.8672 # GDT_score(maxd=10,maxw=4.2)= -78.6809 # GDT_score(maxd=12,maxw=4.3)= -81.6574 # GDT_score(maxd=12,maxw=4.5)= -79.5503 # GDT_score(maxd=12,maxw=4.7)= -77.469 # GDT_score(maxd=14,maxw=5.2)= -75.6288 # GDT_score(maxd=14,maxw=5.5)= -72.5975 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_885525702.pdb -s /var/tmp/to_scwrl_885525702.seq -o /var/tmp/from_scwrl_885525702.pdb > /var/tmp/scwrl_885525702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_885525702.pdb # conformation set from SCWRL output # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -84.7656 # GDT_score(maxd=8,maxw=2.9)= -87.6267 # GDT_score(maxd=8,maxw=3.2)= -85.0343 # GDT_score(maxd=8,maxw=3.5)= -81.6366 # GDT_score(maxd=10,maxw=3.8)= -83.429 # GDT_score(maxd=10,maxw=4)= -81.23 # GDT_score(maxd=10,maxw=4.2)= -79.0324 # GDT_score(maxd=12,maxw=4.3)= -82.002 # GDT_score(maxd=12,maxw=4.5)= -79.8783 # GDT_score(maxd=12,maxw=4.7)= -77.7853 # GDT_score(maxd=14,maxw=5.2)= -75.911 # GDT_score(maxd=14,maxw=5.5)= -72.8612 # command:# request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1537232639.pdb -s /var/tmp/to_scwrl_1537232639.seq -o /var/tmp/from_scwrl_1537232639.pdb > /var/tmp/scwrl_1537232639.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1537232639.pdb # conformation set from SCWRL output # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0311.try1-opt2.pdb looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -83.5938 # GDT_score(maxd=8,maxw=2.9)= -86.9674 # GDT_score(maxd=8,maxw=3.2)= -84.0849 # GDT_score(maxd=8,maxw=3.5)= -80.5093 # GDT_score(maxd=10,maxw=3.8)= -82.3921 # GDT_score(maxd=10,maxw=4)= -80.1886 # GDT_score(maxd=10,maxw=4.2)= -78.037 # GDT_score(maxd=12,maxw=4.3)= -81.0329 # GDT_score(maxd=12,maxw=4.5)= -78.9493 # GDT_score(maxd=12,maxw=4.7)= -76.8697 # GDT_score(maxd=14,maxw=5.2)= -75.1107 # GDT_score(maxd=14,maxw=5.5)= -72.05 # command:# Prefix for output files set to # command:superimposing iter= 0 total_weight= 7.4200000e+02 rmsd (weighted)= 2.5271475e+00 (unweighted)= 4.1659845e+01 superimposing iter= 1 total_weight= 1.5080404e+03 rmsd (weighted)= 1.3132102e+00 (unweighted)= 4.1765967e+01 superimposing iter= 2 total_weight= 7.4690111e+02 rmsd (weighted)= 1.0082881e+00 (unweighted)= 4.1794257e+01 superimposing iter= 3 total_weight= 6.3775258e+02 rmsd (weighted)= 8.5711633e-01 (unweighted)= 4.1812244e+01 superimposing iter= 4 total_weight= 6.3740134e+02 rmsd (weighted)= 7.3212902e-01 (unweighted)= 4.1825885e+01 superimposing iter= 5 total_weight= 6.3204985e+02 rmsd (weighted)= 6.3308454e-01 (unweighted)= 4.1830252e+01 # command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.84375 # GDT_score = -71.875 # GDT_score(maxd=8,maxw=2.9)= -77.3094 # GDT_score(maxd=8,maxw=3.2)= -74.1136 # GDT_score(maxd=8,maxw=3.5)= -70.5165 # GDT_score(maxd=10,maxw=3.8)= -71.9442 # GDT_score(maxd=10,maxw=4)= -69.5641 # GDT_score(maxd=10,maxw=4.2)= -67.2672 # GDT_score(maxd=12,maxw=4.3)= -70.0602 # GDT_score(maxd=12,maxw=4.5)= -67.8815 # GDT_score(maxd=12,maxw=4.7)= -65.8573 # GDT_score(maxd=14,maxw=5.2)= -64.136 # GDT_score(maxd=14,maxw=5.5)= -61.6071 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.96875 # GDT_score = -80.8594 # GDT_score(maxd=8,maxw=2.9)= -83.8178 # GDT_score(maxd=8,maxw=3.2)= -81.3454 # GDT_score(maxd=8,maxw=3.5)= -78.2481 # GDT_score(maxd=10,maxw=3.8)= -80.0603 # GDT_score(maxd=10,maxw=4)= -77.8677 # GDT_score(maxd=10,maxw=4.2)= -75.6572 # GDT_score(maxd=12,maxw=4.3)= -78.643 # GDT_score(maxd=12,maxw=4.5)= -76.519 # GDT_score(maxd=12,maxw=4.7)= -74.3802 # GDT_score(maxd=14,maxw=5.2)= -72.5898 # GDT_score(maxd=14,maxw=5.5)= -69.6808 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0311.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt2.gromacs0.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try12-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # ReadConformPDB reading from PDB file T0311.try12-opt2.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try12-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 81 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 24 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0311.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry1cTermRotAndCap.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file fromTry4breakatS75.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file helixDownFromTry6.renum.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try8MoveCtermOutTake2.renum.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-1utxA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-1utxA # ReadConformPDB reading from PDB file ../dimer/decoys/dimer-2b5aA.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//dimer-2b5aA # ReadConformPDB reading from PDB file ../dimer/decoys/try8MoveCtermOutTake2.renum.pdb.gz looking for chain 'A' model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation dimer//try8MoveCtermOutTake2.renum # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_237737786.pdb -s /var/tmp/to_scwrl_237737786.seq -o /var/tmp/from_scwrl_237737786.pdb > /var/tmp/scwrl_237737786.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_237737786.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1922197889.pdb -s /var/tmp/to_scwrl_1922197889.seq -o /var/tmp/from_scwrl_1922197889.pdb > /var/tmp/scwrl_1922197889.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1922197889.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1152215509.pdb -s /var/tmp/to_scwrl_1152215509.seq -o /var/tmp/from_scwrl_1152215509.pdb > /var/tmp/scwrl_1152215509.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1152215509.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1846221759.pdb -s /var/tmp/to_scwrl_1846221759.seq -o /var/tmp/from_scwrl_1846221759.pdb > /var/tmp/scwrl_1846221759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1846221759.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1220314397.pdb -s /var/tmp/to_scwrl_1220314397.seq -o /var/tmp/from_scwrl_1220314397.pdb > /var/tmp/scwrl_1220314397.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1220314397.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1246763782.pdb -s /var/tmp/to_scwrl_1246763782.seq -o /var/tmp/from_scwrl_1246763782.pdb > /var/tmp/scwrl_1246763782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1246763782.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1307120665.pdb -s /var/tmp/to_scwrl_1307120665.seq -o /var/tmp/from_scwrl_1307120665.pdb > /var/tmp/scwrl_1307120665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1307120665.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_769919886.pdb -s /var/tmp/to_scwrl_769919886.seq -o /var/tmp/from_scwrl_769919886.pdb > /var/tmp/scwrl_769919886.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_769919886.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_602564109.pdb -s /var/tmp/to_scwrl_602564109.seq -o /var/tmp/from_scwrl_602564109.pdb > /var/tmp/scwrl_602564109.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_602564109.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_759266201.pdb -s /var/tmp/to_scwrl_759266201.seq -o /var/tmp/from_scwrl_759266201.pdb > /var/tmp/scwrl_759266201.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_759266201.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_517619551.pdb -s /var/tmp/to_scwrl_517619551.seq -o /var/tmp/from_scwrl_517619551.pdb > /var/tmp/scwrl_517619551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_517619551.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_820571036.pdb -s /var/tmp/to_scwrl_820571036.seq -o /var/tmp/from_scwrl_820571036.pdb > /var/tmp/scwrl_820571036.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_820571036.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1948568173.pdb -s /var/tmp/to_scwrl_1948568173.seq -o /var/tmp/from_scwrl_1948568173.pdb > /var/tmp/scwrl_1948568173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1948568173.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1816687160.pdb -s /var/tmp/to_scwrl_1816687160.seq -o /var/tmp/from_scwrl_1816687160.pdb > /var/tmp/scwrl_1816687160.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1816687160.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1064908970.pdb -s /var/tmp/to_scwrl_1064908970.seq -o /var/tmp/from_scwrl_1064908970.pdb > /var/tmp/scwrl_1064908970.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1064908970.pdb # conformation set from SCWRL output # naming current conformation 3D-JIGSAW_TS5-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_184124141.pdb -s /var/tmp/to_scwrl_184124141.seq -o /var/tmp/from_scwrl_184124141.pdb > /var/tmp/scwrl_184124141.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_184124141.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 21 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_442933875.pdb -s /var/tmp/to_scwrl_442933875.seq -o /var/tmp/from_scwrl_442933875.pdb > /var/tmp/scwrl_442933875.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_442933875.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1198606361.pdb -s /var/tmp/to_scwrl_1198606361.seq -o /var/tmp/from_scwrl_1198606361.pdb > /var/tmp/scwrl_1198606361.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1198606361.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2007397173.pdb -s /var/tmp/to_scwrl_2007397173.seq -o /var/tmp/from_scwrl_2007397173.pdb > /var/tmp/scwrl_2007397173.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2007397173.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_101197995.pdb -s /var/tmp/to_scwrl_101197995.seq -o /var/tmp/from_scwrl_101197995.pdb > /var/tmp/scwrl_101197995.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101197995.pdb # conformation set from SCWRL output # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_534489161.pdb -s /var/tmp/to_scwrl_534489161.seq -o /var/tmp/from_scwrl_534489161.pdb > /var/tmp/scwrl_534489161.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_534489161.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1742770741.pdb -s /var/tmp/to_scwrl_1742770741.seq -o /var/tmp/from_scwrl_1742770741.pdb > /var/tmp/scwrl_1742770741.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1742770741.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_721169922.pdb -s /var/tmp/to_scwrl_721169922.seq -o /var/tmp/from_scwrl_721169922.pdb > /var/tmp/scwrl_721169922.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721169922.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_812960727.pdb -s /var/tmp/to_scwrl_812960727.seq -o /var/tmp/from_scwrl_812960727.pdb > /var/tmp/scwrl_812960727.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_812960727.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_4877489.pdb -s /var/tmp/to_scwrl_4877489.seq -o /var/tmp/from_scwrl_4877489.pdb > /var/tmp/scwrl_4877489.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_4877489.pdb # conformation set from SCWRL output # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_103091293.pdb -s /var/tmp/to_scwrl_103091293.seq -o /var/tmp/from_scwrl_103091293.pdb > /var/tmp/scwrl_103091293.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_103091293.pdb # conformation set from SCWRL output # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_883392007.pdb -s /var/tmp/to_scwrl_883392007.seq -o /var/tmp/from_scwrl_883392007.pdb > /var/tmp/scwrl_883392007.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_883392007.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1891218866.pdb -s /var/tmp/to_scwrl_1891218866.seq -o /var/tmp/from_scwrl_1891218866.pdb > /var/tmp/scwrl_1891218866.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1891218866.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_118101014.pdb -s /var/tmp/to_scwrl_118101014.seq -o /var/tmp/from_scwrl_118101014.pdb > /var/tmp/scwrl_118101014.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_118101014.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1768917709.pdb -s /var/tmp/to_scwrl_1768917709.seq -o /var/tmp/from_scwrl_1768917709.pdb > /var/tmp/scwrl_1768917709.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1768917709.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 22 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1280967858.pdb -s /var/tmp/to_scwrl_1280967858.seq -o /var/tmp/from_scwrl_1280967858.pdb > /var/tmp/scwrl_1280967858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1280967858.pdb # conformation set from SCWRL output # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_355838800.pdb -s /var/tmp/to_scwrl_355838800.seq -o /var/tmp/from_scwrl_355838800.pdb > /var/tmp/scwrl_355838800.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355838800.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1543631951.pdb -s /var/tmp/to_scwrl_1543631951.seq -o /var/tmp/from_scwrl_1543631951.pdb > /var/tmp/scwrl_1543631951.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1543631951.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_285699722.pdb -s /var/tmp/to_scwrl_285699722.seq -o /var/tmp/from_scwrl_285699722.pdb > /var/tmp/scwrl_285699722.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_285699722.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_54576912.pdb -s /var/tmp/to_scwrl_54576912.seq -o /var/tmp/from_scwrl_54576912.pdb > /var/tmp/scwrl_54576912.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_54576912.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_616462702.pdb -s /var/tmp/to_scwrl_616462702.seq -o /var/tmp/from_scwrl_616462702.pdb > /var/tmp/scwrl_616462702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_616462702.pdb # conformation set from SCWRL output # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CPHmodels_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CPHmodels_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1532463504.pdb -s /var/tmp/to_scwrl_1532463504.seq -o /var/tmp/from_scwrl_1532463504.pdb > /var/tmp/scwrl_1532463504.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1532463504.pdb # conformation set from SCWRL output # naming current conformation CPHmodels_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1361697577.pdb -s /var/tmp/to_scwrl_1361697577.seq -o /var/tmp/from_scwrl_1361697577.pdb > /var/tmp/scwrl_1361697577.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1361697577.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1386382587.pdb -s /var/tmp/to_scwrl_1386382587.seq -o /var/tmp/from_scwrl_1386382587.pdb > /var/tmp/scwrl_1386382587.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1386382587.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2135027613.pdb -s /var/tmp/to_scwrl_2135027613.seq -o /var/tmp/from_scwrl_2135027613.pdb > /var/tmp/scwrl_2135027613.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2135027613.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2120963779.pdb -s /var/tmp/to_scwrl_2120963779.seq -o /var/tmp/from_scwrl_2120963779.pdb > /var/tmp/scwrl_2120963779.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2120963779.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1904002138.pdb -s /var/tmp/to_scwrl_1904002138.seq -o /var/tmp/from_scwrl_1904002138.pdb > /var/tmp/scwrl_1904002138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1904002138.pdb # conformation set from SCWRL output # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_808115003.pdb -s /var/tmp/to_scwrl_808115003.seq -o /var/tmp/from_scwrl_808115003.pdb > /var/tmp/scwrl_808115003.log Error: Couldn't open file /var/tmp/from_scwrl_808115003.pdb or /var/tmp/from_scwrl_808115003.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_808115003_b.pdb or decoys//var/tmp/from_scwrl_808115003_b.pdb.gz for input Trying /var/tmp/from_scwrl_808115003_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_808115003_b.pdb or /var/tmp/from_scwrl_808115003_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_808115003_a.pdb or decoys//var/tmp/from_scwrl_808115003_a.pdb.gz for input Trying /var/tmp/from_scwrl_808115003_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_808115003_a.pdb or /var/tmp/from_scwrl_808115003_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_808115003.pdb or /var/tmp/from_scwrl_808115003_b.pdb or /var/tmp/from_scwrl_808115003_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1922048305.pdb -s /var/tmp/to_scwrl_1922048305.seq -o /var/tmp/from_scwrl_1922048305.pdb > /var/tmp/scwrl_1922048305.log Error: Couldn't open file /var/tmp/from_scwrl_1922048305.pdb or /var/tmp/from_scwrl_1922048305.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1922048305_b.pdb or decoys//var/tmp/from_scwrl_1922048305_b.pdb.gz for input Trying /var/tmp/from_scwrl_1922048305_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1922048305_b.pdb or /var/tmp/from_scwrl_1922048305_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1922048305_a.pdb or decoys//var/tmp/from_scwrl_1922048305_a.pdb.gz for input Trying /var/tmp/from_scwrl_1922048305_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1922048305_a.pdb or /var/tmp/from_scwrl_1922048305_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1922048305.pdb or /var/tmp/from_scwrl_1922048305_b.pdb or /var/tmp/from_scwrl_1922048305_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1573205652.pdb -s /var/tmp/to_scwrl_1573205652.seq -o /var/tmp/from_scwrl_1573205652.pdb > /var/tmp/scwrl_1573205652.log Error: Couldn't open file /var/tmp/from_scwrl_1573205652.pdb or /var/tmp/from_scwrl_1573205652.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1573205652_b.pdb or decoys//var/tmp/from_scwrl_1573205652_b.pdb.gz for input Trying /var/tmp/from_scwrl_1573205652_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1573205652_b.pdb or /var/tmp/from_scwrl_1573205652_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1573205652_a.pdb or decoys//var/tmp/from_scwrl_1573205652_a.pdb.gz for input Trying /var/tmp/from_scwrl_1573205652_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1573205652_a.pdb or /var/tmp/from_scwrl_1573205652_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1573205652.pdb or /var/tmp/from_scwrl_1573205652_b.pdb or /var/tmp/from_scwrl_1573205652_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1873023972.pdb -s /var/tmp/to_scwrl_1873023972.seq -o /var/tmp/from_scwrl_1873023972.pdb > /var/tmp/scwrl_1873023972.log Error: Couldn't open file /var/tmp/from_scwrl_1873023972.pdb or /var/tmp/from_scwrl_1873023972.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1873023972_b.pdb or decoys//var/tmp/from_scwrl_1873023972_b.pdb.gz for input Trying /var/tmp/from_scwrl_1873023972_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_1873023972_b.pdb or /var/tmp/from_scwrl_1873023972_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_1873023972_a.pdb or decoys//var/tmp/from_scwrl_1873023972_a.pdb.gz for input Trying /var/tmp/from_scwrl_1873023972_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_1873023972_a.pdb or /var/tmp/from_scwrl_1873023972_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_1873023972.pdb or /var/tmp/from_scwrl_1873023972_b.pdb or /var/tmp/from_scwrl_1873023972_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2106172446.pdb -s /var/tmp/to_scwrl_2106172446.seq -o /var/tmp/from_scwrl_2106172446.pdb > /var/tmp/scwrl_2106172446.log Error: Couldn't open file /var/tmp/from_scwrl_2106172446.pdb or /var/tmp/from_scwrl_2106172446.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2106172446_b.pdb or decoys//var/tmp/from_scwrl_2106172446_b.pdb.gz for input Trying /var/tmp/from_scwrl_2106172446_b.pdb Error: Couldn't open file /var/tmp/from_scwrl_2106172446_b.pdb or /var/tmp/from_scwrl_2106172446_b.pdb.gz for input Warning: Couldn't open file decoys//var/tmp/from_scwrl_2106172446_a.pdb or decoys//var/tmp/from_scwrl_2106172446_a.pdb.gz for input Trying /var/tmp/from_scwrl_2106172446_a.pdb Error: Couldn't open file /var/tmp/from_scwrl_2106172446_a.pdb or /var/tmp/from_scwrl_2106172446_a.pdb.gz for input Error: can't open any of /var/tmp/from_scwrl_2106172446.pdb or /var/tmp/from_scwrl_2106172446_b.pdb or /var/tmp/from_scwrl_2106172446_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2016139527.pdb -s /var/tmp/to_scwrl_2016139527.seq -o /var/tmp/from_scwrl_2016139527.pdb > /var/tmp/scwrl_2016139527.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2016139527.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_924146687.pdb -s /var/tmp/to_scwrl_924146687.seq -o /var/tmp/from_scwrl_924146687.pdb > /var/tmp/scwrl_924146687.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_924146687.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1966085972.pdb -s /var/tmp/to_scwrl_1966085972.seq -o /var/tmp/from_scwrl_1966085972.pdb > /var/tmp/scwrl_1966085972.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1966085972.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2117337523.pdb -s /var/tmp/to_scwrl_2117337523.seq -o /var/tmp/from_scwrl_2117337523.pdb > /var/tmp/scwrl_2117337523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2117337523.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1458635848.pdb -s /var/tmp/to_scwrl_1458635848.seq -o /var/tmp/from_scwrl_1458635848.pdb > /var/tmp/scwrl_1458635848.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1458635848.pdb # conformation set from SCWRL output # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1561373066.pdb -s /var/tmp/to_scwrl_1561373066.seq -o /var/tmp/from_scwrl_1561373066.pdb > /var/tmp/scwrl_1561373066.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1561373066.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_691023798.pdb -s /var/tmp/to_scwrl_691023798.seq -o /var/tmp/from_scwrl_691023798.pdb > /var/tmp/scwrl_691023798.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_691023798.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_124112928.pdb -s /var/tmp/to_scwrl_124112928.seq -o /var/tmp/from_scwrl_124112928.pdb > /var/tmp/scwrl_124112928.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_124112928.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1566250555.pdb -s /var/tmp/to_scwrl_1566250555.seq -o /var/tmp/from_scwrl_1566250555.pdb > /var/tmp/scwrl_1566250555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1566250555.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_794115091.pdb -s /var/tmp/to_scwrl_794115091.seq -o /var/tmp/from_scwrl_794115091.pdb > /var/tmp/scwrl_794115091.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_794115091.pdb # conformation set from SCWRL output # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1007504936.pdb -s /var/tmp/to_scwrl_1007504936.seq -o /var/tmp/from_scwrl_1007504936.pdb > /var/tmp/scwrl_1007504936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1007504936.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1309985774.pdb -s /var/tmp/to_scwrl_1309985774.seq -o /var/tmp/from_scwrl_1309985774.pdb > /var/tmp/scwrl_1309985774.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1309985774.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_912216105.pdb -s /var/tmp/to_scwrl_912216105.seq -o /var/tmp/from_scwrl_912216105.pdb > /var/tmp/scwrl_912216105.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_912216105.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_628938998.pdb -s /var/tmp/to_scwrl_628938998.seq -o /var/tmp/from_scwrl_628938998.pdb > /var/tmp/scwrl_628938998.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_628938998.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_443469986.pdb -s /var/tmp/to_scwrl_443469986.seq -o /var/tmp/from_scwrl_443469986.pdb > /var/tmp/scwrl_443469986.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_443469986.pdb # conformation set from SCWRL output # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1268054904.pdb -s /var/tmp/to_scwrl_1268054904.seq -o /var/tmp/from_scwrl_1268054904.pdb > /var/tmp/scwrl_1268054904.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1268054904.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_25087302.pdb -s /var/tmp/to_scwrl_25087302.seq -o /var/tmp/from_scwrl_25087302.pdb > /var/tmp/scwrl_25087302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_25087302.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_729169708.pdb -s /var/tmp/to_scwrl_729169708.seq -o /var/tmp/from_scwrl_729169708.pdb > /var/tmp/scwrl_729169708.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_729169708.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1322631816.pdb -s /var/tmp/to_scwrl_1322631816.seq -o /var/tmp/from_scwrl_1322631816.pdb > /var/tmp/scwrl_1322631816.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1322631816.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_641550004.pdb -s /var/tmp/to_scwrl_641550004.seq -o /var/tmp/from_scwrl_641550004.pdb > /var/tmp/scwrl_641550004.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641550004.pdb # conformation set from SCWRL output # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_114149565.pdb -s /var/tmp/to_scwrl_114149565.seq -o /var/tmp/from_scwrl_114149565.pdb > /var/tmp/scwrl_114149565.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_114149565.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_536845748.pdb -s /var/tmp/to_scwrl_536845748.seq -o /var/tmp/from_scwrl_536845748.pdb > /var/tmp/scwrl_536845748.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_536845748.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2027932591.pdb -s /var/tmp/to_scwrl_2027932591.seq -o /var/tmp/from_scwrl_2027932591.pdb > /var/tmp/scwrl_2027932591.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2027932591.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_101693532.pdb -s /var/tmp/to_scwrl_101693532.seq -o /var/tmp/from_scwrl_101693532.pdb > /var/tmp/scwrl_101693532.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_101693532.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_510325880.pdb -s /var/tmp/to_scwrl_510325880.seq -o /var/tmp/from_scwrl_510325880.pdb > /var/tmp/scwrl_510325880.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_510325880.pdb # conformation set from SCWRL output # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1784451083.pdb -s /var/tmp/to_scwrl_1784451083.seq -o /var/tmp/from_scwrl_1784451083.pdb > /var/tmp/scwrl_1784451083.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1784451083.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_909808535.pdb -s /var/tmp/to_scwrl_909808535.seq -o /var/tmp/from_scwrl_909808535.pdb > /var/tmp/scwrl_909808535.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_909808535.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_284890538.pdb -s /var/tmp/to_scwrl_284890538.seq -o /var/tmp/from_scwrl_284890538.pdb > /var/tmp/scwrl_284890538.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_284890538.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1210173088.pdb -s /var/tmp/to_scwrl_1210173088.seq -o /var/tmp/from_scwrl_1210173088.pdb > /var/tmp/scwrl_1210173088.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1210173088.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 8 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_635348860.pdb -s /var/tmp/to_scwrl_635348860.seq -o /var/tmp/from_scwrl_635348860.pdb > /var/tmp/scwrl_635348860.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_635348860.pdb # conformation set from SCWRL output # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_243579337.pdb -s /var/tmp/to_scwrl_243579337.seq -o /var/tmp/from_scwrl_243579337.pdb > /var/tmp/scwrl_243579337.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_243579337.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1078828968.pdb -s /var/tmp/to_scwrl_1078828968.seq -o /var/tmp/from_scwrl_1078828968.pdb > /var/tmp/scwrl_1078828968.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1078828968.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1559495547.pdb -s /var/tmp/to_scwrl_1559495547.seq -o /var/tmp/from_scwrl_1559495547.pdb > /var/tmp/scwrl_1559495547.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1559495547.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_62181662.pdb -s /var/tmp/to_scwrl_62181662.seq -o /var/tmp/from_scwrl_62181662.pdb > /var/tmp/scwrl_62181662.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_62181662.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1048682845.pdb -s /var/tmp/to_scwrl_1048682845.seq -o /var/tmp/from_scwrl_1048682845.pdb > /var/tmp/scwrl_1048682845.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1048682845.pdb # conformation set from SCWRL output # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_870647749.pdb -s /var/tmp/to_scwrl_870647749.seq -o /var/tmp/from_scwrl_870647749.pdb > /var/tmp/scwrl_870647749.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_870647749.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1623554728.pdb -s /var/tmp/to_scwrl_1623554728.seq -o /var/tmp/from_scwrl_1623554728.pdb > /var/tmp/scwrl_1623554728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1623554728.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1739706642.pdb -s /var/tmp/to_scwrl_1739706642.seq -o /var/tmp/from_scwrl_1739706642.pdb > /var/tmp/scwrl_1739706642.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1739706642.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_994760677.pdb -s /var/tmp/to_scwrl_994760677.seq -o /var/tmp/from_scwrl_994760677.pdb > /var/tmp/scwrl_994760677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_994760677.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1042321637.pdb -s /var/tmp/to_scwrl_1042321637.seq -o /var/tmp/from_scwrl_1042321637.pdb > /var/tmp/scwrl_1042321637.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1042321637.pdb # conformation set from SCWRL output # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_386338086.pdb -s /var/tmp/to_scwrl_386338086.seq -o /var/tmp/from_scwrl_386338086.pdb > /var/tmp/scwrl_386338086.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_386338086.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2002265612.pdb -s /var/tmp/to_scwrl_2002265612.seq -o /var/tmp/from_scwrl_2002265612.pdb > /var/tmp/scwrl_2002265612.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2002265612.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_204823764.pdb -s /var/tmp/to_scwrl_204823764.seq -o /var/tmp/from_scwrl_204823764.pdb > /var/tmp/scwrl_204823764.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_204823764.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1298554190.pdb -s /var/tmp/to_scwrl_1298554190.seq -o /var/tmp/from_scwrl_1298554190.pdb > /var/tmp/scwrl_1298554190.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298554190.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_483720963.pdb -s /var/tmp/to_scwrl_483720963.seq -o /var/tmp/from_scwrl_483720963.pdb > /var/tmp/scwrl_483720963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_483720963.pdb # conformation set from SCWRL output # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_648293750.pdb -s /var/tmp/to_scwrl_648293750.seq -o /var/tmp/from_scwrl_648293750.pdb > /var/tmp/scwrl_648293750.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_648293750.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 9 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_419125448.pdb -s /var/tmp/to_scwrl_419125448.seq -o /var/tmp/from_scwrl_419125448.pdb > /var/tmp/scwrl_419125448.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_419125448.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_508808265.pdb -s /var/tmp/to_scwrl_508808265.seq -o /var/tmp/from_scwrl_508808265.pdb > /var/tmp/scwrl_508808265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_508808265.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1377463458.pdb -s /var/tmp/to_scwrl_1377463458.seq -o /var/tmp/from_scwrl_1377463458.pdb > /var/tmp/scwrl_1377463458.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1377463458.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1741757265.pdb -s /var/tmp/to_scwrl_1741757265.seq -o /var/tmp/from_scwrl_1741757265.pdb > /var/tmp/scwrl_1741757265.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1741757265.pdb # conformation set from SCWRL output # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1150358268.pdb -s /var/tmp/to_scwrl_1150358268.seq -o /var/tmp/from_scwrl_1150358268.pdb > /var/tmp/scwrl_1150358268.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1150358268.pdb # conformation set from SCWRL output # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1491613023.pdb -s /var/tmp/to_scwrl_1491613023.seq -o /var/tmp/from_scwrl_1491613023.pdb > /var/tmp/scwrl_1491613023.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1491613023.pdb # conformation set from SCWRL output # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_131119366.pdb -s /var/tmp/to_scwrl_131119366.seq -o /var/tmp/from_scwrl_131119366.pdb > /var/tmp/scwrl_131119366.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_131119366.pdb # conformation set from SCWRL output # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1030807214.pdb -s /var/tmp/to_scwrl_1030807214.seq -o /var/tmp/from_scwrl_1030807214.pdb > /var/tmp/scwrl_1030807214.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1030807214.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1593306555.pdb -s /var/tmp/to_scwrl_1593306555.seq -o /var/tmp/from_scwrl_1593306555.pdb > /var/tmp/scwrl_1593306555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1593306555.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_641445246.pdb -s /var/tmp/to_scwrl_641445246.seq -o /var/tmp/from_scwrl_641445246.pdb > /var/tmp/scwrl_641445246.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_641445246.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_667774650.pdb -s /var/tmp/to_scwrl_667774650.seq -o /var/tmp/from_scwrl_667774650.pdb > /var/tmp/scwrl_667774650.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_667774650.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_355631443.pdb -s /var/tmp/to_scwrl_355631443.seq -o /var/tmp/from_scwrl_355631443.pdb > /var/tmp/scwrl_355631443.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_355631443.pdb # conformation set from SCWRL output # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_926335784.pdb -s /var/tmp/to_scwrl_926335784.seq -o /var/tmp/from_scwrl_926335784.pdb > /var/tmp/scwrl_926335784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_926335784.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1877947738.pdb -s /var/tmp/to_scwrl_1877947738.seq -o /var/tmp/from_scwrl_1877947738.pdb > /var/tmp/scwrl_1877947738.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1877947738.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_990980304.pdb -s /var/tmp/to_scwrl_990980304.seq -o /var/tmp/from_scwrl_990980304.pdb > /var/tmp/scwrl_990980304.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_990980304.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1169915120.pdb -s /var/tmp/to_scwrl_1169915120.seq -o /var/tmp/from_scwrl_1169915120.pdb > /var/tmp/scwrl_1169915120.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1169915120.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_809293060.pdb -s /var/tmp/to_scwrl_809293060.seq -o /var/tmp/from_scwrl_809293060.pdb > /var/tmp/scwrl_809293060.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_809293060.pdb # conformation set from SCWRL output # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_402992204.pdb -s /var/tmp/to_scwrl_402992204.seq -o /var/tmp/from_scwrl_402992204.pdb > /var/tmp/scwrl_402992204.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_402992204.pdb # conformation set from SCWRL output # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1232096782.pdb -s /var/tmp/to_scwrl_1232096782.seq -o /var/tmp/from_scwrl_1232096782.pdb > /var/tmp/scwrl_1232096782.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1232096782.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1857975905.pdb -s /var/tmp/to_scwrl_1857975905.seq -o /var/tmp/from_scwrl_1857975905.pdb > /var/tmp/scwrl_1857975905.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1857975905.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1273639952.pdb -s /var/tmp/to_scwrl_1273639952.seq -o /var/tmp/from_scwrl_1273639952.pdb > /var/tmp/scwrl_1273639952.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1273639952.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_708167864.pdb -s /var/tmp/to_scwrl_708167864.seq -o /var/tmp/from_scwrl_708167864.pdb > /var/tmp/scwrl_708167864.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_708167864.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 82 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1450198900.pdb -s /var/tmp/to_scwrl_1450198900.seq -o /var/tmp/from_scwrl_1450198900.pdb > /var/tmp/scwrl_1450198900.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1450198900.pdb # conformation set from SCWRL output # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_120916982.pdb -s /var/tmp/to_scwrl_120916982.seq -o /var/tmp/from_scwrl_120916982.pdb > /var/tmp/scwrl_120916982.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_120916982.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1750489500.pdb -s /var/tmp/to_scwrl_1750489500.seq -o /var/tmp/from_scwrl_1750489500.pdb > /var/tmp/scwrl_1750489500.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1750489500.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1836536987.pdb -s /var/tmp/to_scwrl_1836536987.seq -o /var/tmp/from_scwrl_1836536987.pdb > /var/tmp/scwrl_1836536987.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836536987.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2123182595.pdb -s /var/tmp/to_scwrl_2123182595.seq -o /var/tmp/from_scwrl_2123182595.pdb > /var/tmp/scwrl_2123182595.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2123182595.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1955313264.pdb -s /var/tmp/to_scwrl_1955313264.seq -o /var/tmp/from_scwrl_1955313264.pdb > /var/tmp/scwrl_1955313264.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1955313264.pdb # conformation set from SCWRL output # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_987607531.pdb -s /var/tmp/to_scwrl_987607531.seq -o /var/tmp/from_scwrl_987607531.pdb > /var/tmp/scwrl_987607531.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_987607531.pdb # conformation set from SCWRL output # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_459419911.pdb -s /var/tmp/to_scwrl_459419911.seq -o /var/tmp/from_scwrl_459419911.pdb > /var/tmp/scwrl_459419911.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_459419911.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 91 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_456123367.pdb -s /var/tmp/to_scwrl_456123367.seq -o /var/tmp/from_scwrl_456123367.pdb > /var/tmp/scwrl_456123367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_456123367.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1406732979.pdb -s /var/tmp/to_scwrl_1406732979.seq -o /var/tmp/from_scwrl_1406732979.pdb > /var/tmp/scwrl_1406732979.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406732979.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_968228177.pdb -s /var/tmp/to_scwrl_968228177.seq -o /var/tmp/from_scwrl_968228177.pdb > /var/tmp/scwrl_968228177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968228177.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1833586825.pdb -s /var/tmp/to_scwrl_1833586825.seq -o /var/tmp/from_scwrl_1833586825.pdb > /var/tmp/scwrl_1833586825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1833586825.pdb # conformation set from SCWRL output # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1001006598.pdb -s /var/tmp/to_scwrl_1001006598.seq -o /var/tmp/from_scwrl_1001006598.pdb > /var/tmp/scwrl_1001006598.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001006598.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2118586445.pdb -s /var/tmp/to_scwrl_2118586445.seq -o /var/tmp/from_scwrl_2118586445.pdb > /var/tmp/scwrl_2118586445.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2118586445.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1177716202.pdb -s /var/tmp/to_scwrl_1177716202.seq -o /var/tmp/from_scwrl_1177716202.pdb > /var/tmp/scwrl_1177716202.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1177716202.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1132125963.pdb -s /var/tmp/to_scwrl_1132125963.seq -o /var/tmp/from_scwrl_1132125963.pdb > /var/tmp/scwrl_1132125963.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1132125963.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1001910012.pdb -s /var/tmp/to_scwrl_1001910012.seq -o /var/tmp/from_scwrl_1001910012.pdb > /var/tmp/scwrl_1001910012.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1001910012.pdb # conformation set from SCWRL output # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_623539111.pdb -s /var/tmp/to_scwrl_623539111.seq -o /var/tmp/from_scwrl_623539111.pdb > /var/tmp/scwrl_623539111.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623539111.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1773571209.pdb -s /var/tmp/to_scwrl_1773571209.seq -o /var/tmp/from_scwrl_1773571209.pdb > /var/tmp/scwrl_1773571209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1773571209.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 76 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1669684661.pdb -s /var/tmp/to_scwrl_1669684661.seq -o /var/tmp/from_scwrl_1669684661.pdb > /var/tmp/scwrl_1669684661.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1669684661.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_979170555.pdb -s /var/tmp/to_scwrl_979170555.seq -o /var/tmp/from_scwrl_979170555.pdb > /var/tmp/scwrl_979170555.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_979170555.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_552423346.pdb -s /var/tmp/to_scwrl_552423346.seq -o /var/tmp/from_scwrl_552423346.pdb > /var/tmp/scwrl_552423346.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_552423346.pdb # conformation set from SCWRL output # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1400148752.pdb -s /var/tmp/to_scwrl_1400148752.seq -o /var/tmp/from_scwrl_1400148752.pdb > /var/tmp/scwrl_1400148752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1400148752.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1970150858.pdb -s /var/tmp/to_scwrl_1970150858.seq -o /var/tmp/from_scwrl_1970150858.pdb > /var/tmp/scwrl_1970150858.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1970150858.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1722338466.pdb -s /var/tmp/to_scwrl_1722338466.seq -o /var/tmp/from_scwrl_1722338466.pdb > /var/tmp/scwrl_1722338466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1722338466.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_61958166.pdb -s /var/tmp/to_scwrl_61958166.seq -o /var/tmp/from_scwrl_61958166.pdb > /var/tmp/scwrl_61958166.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_61958166.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_225659415.pdb -s /var/tmp/to_scwrl_225659415.seq -o /var/tmp/from_scwrl_225659415.pdb > /var/tmp/scwrl_225659415.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_225659415.pdb # conformation set from SCWRL output # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_806951602.pdb -s /var/tmp/to_scwrl_806951602.seq -o /var/tmp/from_scwrl_806951602.pdb > /var/tmp/scwrl_806951602.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_806951602.pdb # conformation set from SCWRL output # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1919934071.pdb -s /var/tmp/to_scwrl_1919934071.seq -o /var/tmp/from_scwrl_1919934071.pdb > /var/tmp/scwrl_1919934071.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1919934071.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1499299367.pdb -s /var/tmp/to_scwrl_1499299367.seq -o /var/tmp/from_scwrl_1499299367.pdb > /var/tmp/scwrl_1499299367.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1499299367.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1515119465.pdb -s /var/tmp/to_scwrl_1515119465.seq -o /var/tmp/from_scwrl_1515119465.pdb > /var/tmp/scwrl_1515119465.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1515119465.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1222649324.pdb -s /var/tmp/to_scwrl_1222649324.seq -o /var/tmp/from_scwrl_1222649324.pdb > /var/tmp/scwrl_1222649324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1222649324.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1620216349.pdb -s /var/tmp/to_scwrl_1620216349.seq -o /var/tmp/from_scwrl_1620216349.pdb > /var/tmp/scwrl_1620216349.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1620216349.pdb # conformation set from SCWRL output # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1118125318.pdb -s /var/tmp/to_scwrl_1118125318.seq -o /var/tmp/from_scwrl_1118125318.pdb > /var/tmp/scwrl_1118125318.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1118125318.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_911702665.pdb -s /var/tmp/to_scwrl_911702665.seq -o /var/tmp/from_scwrl_911702665.pdb > /var/tmp/scwrl_911702665.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_911702665.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1595915297.pdb -s /var/tmp/to_scwrl_1595915297.seq -o /var/tmp/from_scwrl_1595915297.pdb > /var/tmp/scwrl_1595915297.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1595915297.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_925954936.pdb -s /var/tmp/to_scwrl_925954936.seq -o /var/tmp/from_scwrl_925954936.pdb > /var/tmp/scwrl_925954936.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_925954936.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1899310196.pdb -s /var/tmp/to_scwrl_1899310196.seq -o /var/tmp/from_scwrl_1899310196.pdb > /var/tmp/scwrl_1899310196.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1899310196.pdb # conformation set from SCWRL output # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 73 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2055335209.pdb -s /var/tmp/to_scwrl_2055335209.seq -o /var/tmp/from_scwrl_2055335209.pdb > /var/tmp/scwrl_2055335209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2055335209.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1382078302.pdb -s /var/tmp/to_scwrl_1382078302.seq -o /var/tmp/from_scwrl_1382078302.pdb > /var/tmp/scwrl_1382078302.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1382078302.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 71 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1158559528.pdb -s /var/tmp/to_scwrl_1158559528.seq -o /var/tmp/from_scwrl_1158559528.pdb > /var/tmp/scwrl_1158559528.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1158559528.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_876079739.pdb -s /var/tmp/to_scwrl_876079739.seq -o /var/tmp/from_scwrl_876079739.pdb > /var/tmp/scwrl_876079739.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_876079739.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1068181482.pdb -s /var/tmp/to_scwrl_1068181482.seq -o /var/tmp/from_scwrl_1068181482.pdb > /var/tmp/scwrl_1068181482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1068181482.pdb # conformation set from SCWRL output # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_12082479.pdb -s /var/tmp/to_scwrl_12082479.seq -o /var/tmp/from_scwrl_12082479.pdb > /var/tmp/scwrl_12082479.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_12082479.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_847182537.pdb -s /var/tmp/to_scwrl_847182537.seq -o /var/tmp/from_scwrl_847182537.pdb > /var/tmp/scwrl_847182537.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_847182537.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_98414037.pdb -s /var/tmp/to_scwrl_98414037.seq -o /var/tmp/from_scwrl_98414037.pdb > /var/tmp/scwrl_98414037.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_98414037.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1144208442.pdb -s /var/tmp/to_scwrl_1144208442.seq -o /var/tmp/from_scwrl_1144208442.pdb > /var/tmp/scwrl_1144208442.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1144208442.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1849092549.pdb -s /var/tmp/to_scwrl_1849092549.seq -o /var/tmp/from_scwrl_1849092549.pdb > /var/tmp/scwrl_1849092549.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1849092549.pdb # conformation set from SCWRL output # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_721953148.pdb -s /var/tmp/to_scwrl_721953148.seq -o /var/tmp/from_scwrl_721953148.pdb > /var/tmp/scwrl_721953148.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_721953148.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_770296005.pdb -s /var/tmp/to_scwrl_770296005.seq -o /var/tmp/from_scwrl_770296005.pdb > /var/tmp/scwrl_770296005.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_770296005.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1371293563.pdb -s /var/tmp/to_scwrl_1371293563.seq -o /var/tmp/from_scwrl_1371293563.pdb > /var/tmp/scwrl_1371293563.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1371293563.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1701123702.pdb -s /var/tmp/to_scwrl_1701123702.seq -o /var/tmp/from_scwrl_1701123702.pdb > /var/tmp/scwrl_1701123702.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1701123702.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1322719350.pdb -s /var/tmp/to_scwrl_1322719350.seq -o /var/tmp/from_scwrl_1322719350.pdb > /var/tmp/scwrl_1322719350.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1322719350.pdb # conformation set from SCWRL output # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 78 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_623958670.pdb -s /var/tmp/to_scwrl_623958670.seq -o /var/tmp/from_scwrl_623958670.pdb > /var/tmp/scwrl_623958670.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623958670.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1523790913.pdb -s /var/tmp/to_scwrl_1523790913.seq -o /var/tmp/from_scwrl_1523790913.pdb > /var/tmp/scwrl_1523790913.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1523790913.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_897574170.pdb -s /var/tmp/to_scwrl_897574170.seq -o /var/tmp/from_scwrl_897574170.pdb > /var/tmp/scwrl_897574170.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_897574170.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # Found a chain break before 80 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_685916836.pdb -s /var/tmp/to_scwrl_685916836.seq -o /var/tmp/from_scwrl_685916836.pdb > /var/tmp/scwrl_685916836.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_685916836.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 72 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1749450328.pdb -s /var/tmp/to_scwrl_1749450328.seq -o /var/tmp/from_scwrl_1749450328.pdb > /var/tmp/scwrl_1749450328.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1749450328.pdb # conformation set from SCWRL output # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS1.pdb.gz looking for model 1 # Found a chain break before 11 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1704525771.pdb -s /var/tmp/to_scwrl_1704525771.seq -o /var/tmp/from_scwrl_1704525771.pdb > /var/tmp/scwrl_1704525771.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1704525771.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS2.pdb.gz looking for model 1 # naming current conformation ROKKY_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_458367260.pdb -s /var/tmp/to_scwrl_458367260.seq -o /var/tmp/from_scwrl_458367260.pdb > /var/tmp/scwrl_458367260.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_458367260.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS3.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1101266048.pdb -s /var/tmp/to_scwrl_1101266048.seq -o /var/tmp/from_scwrl_1101266048.pdb > /var/tmp/scwrl_1101266048.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1101266048.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS4.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation ROKKY_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1072161590.pdb -s /var/tmp/to_scwrl_1072161590.seq -o /var/tmp/from_scwrl_1072161590.pdb > /var/tmp/scwrl_1072161590.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1072161590.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROKKY_TS5.pdb.gz looking for model 1 # naming current conformation ROKKY_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1681016584.pdb -s /var/tmp/to_scwrl_1681016584.seq -o /var/tmp/from_scwrl_1681016584.pdb > /var/tmp/scwrl_1681016584.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1681016584.pdb # conformation set from SCWRL output # naming current conformation ROKKY_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_573998752.pdb -s /var/tmp/to_scwrl_573998752.seq -o /var/tmp/from_scwrl_573998752.pdb > /var/tmp/scwrl_573998752.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_573998752.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_42803261.pdb -s /var/tmp/to_scwrl_42803261.seq -o /var/tmp/from_scwrl_42803261.pdb > /var/tmp/scwrl_42803261.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_42803261.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_445235603.pdb -s /var/tmp/to_scwrl_445235603.seq -o /var/tmp/from_scwrl_445235603.pdb > /var/tmp/scwrl_445235603.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_445235603.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_22430402.pdb -s /var/tmp/to_scwrl_22430402.seq -o /var/tmp/from_scwrl_22430402.pdb > /var/tmp/scwrl_22430402.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22430402.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_968758197.pdb -s /var/tmp/to_scwrl_968758197.seq -o /var/tmp/from_scwrl_968758197.pdb > /var/tmp/scwrl_968758197.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_968758197.pdb # conformation set from SCWRL output # naming current conformation SAM-T02_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_197062152.pdb -s /var/tmp/to_scwrl_197062152.seq -o /var/tmp/from_scwrl_197062152.pdb > /var/tmp/scwrl_197062152.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_197062152.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2077765611.pdb -s /var/tmp/to_scwrl_2077765611.seq -o /var/tmp/from_scwrl_2077765611.pdb > /var/tmp/scwrl_2077765611.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2077765611.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL3.pdb.gz looking for model 1 Skipped atom 43, because occupancy 1.0000000e+00 <= existing 1.000 in servers/SAM-T99_AL3.pdb.gz # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_203352852.pdb -s /var/tmp/to_scwrl_203352852.seq -o /var/tmp/from_scwrl_203352852.pdb > /var/tmp/scwrl_203352852.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203352852.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1355621680.pdb -s /var/tmp/to_scwrl_1355621680.seq -o /var/tmp/from_scwrl_1355621680.pdb > /var/tmp/scwrl_1355621680.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355621680.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM-T99_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM-T99_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_806361703.pdb -s /var/tmp/to_scwrl_806361703.seq -o /var/tmp/from_scwrl_806361703.pdb > /var/tmp/scwrl_806361703.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_806361703.pdb # conformation set from SCWRL output # naming current conformation SAM-T99_AL5-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1271534333.pdb -s /var/tmp/to_scwrl_1271534333.seq -o /var/tmp/from_scwrl_1271534333.pdb > /var/tmp/scwrl_1271534333.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1271534333.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1367704159.pdb -s /var/tmp/to_scwrl_1367704159.seq -o /var/tmp/from_scwrl_1367704159.pdb > /var/tmp/scwrl_1367704159.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1367704159.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1653544240.pdb -s /var/tmp/to_scwrl_1653544240.seq -o /var/tmp/from_scwrl_1653544240.pdb > /var/tmp/scwrl_1653544240.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1653544240.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1369948370.pdb -s /var/tmp/to_scwrl_1369948370.seq -o /var/tmp/from_scwrl_1369948370.pdb > /var/tmp/scwrl_1369948370.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1369948370.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_364428955.pdb -s /var/tmp/to_scwrl_364428955.seq -o /var/tmp/from_scwrl_364428955.pdb > /var/tmp/scwrl_364428955.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_364428955.pdb # conformation set from SCWRL output # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1355153142.pdb -s /var/tmp/to_scwrl_1355153142.seq -o /var/tmp/from_scwrl_1355153142.pdb > /var/tmp/scwrl_1355153142.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1355153142.pdb # conformation set from SCWRL output # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2091901519.pdb -s /var/tmp/to_scwrl_2091901519.seq -o /var/tmp/from_scwrl_2091901519.pdb > /var/tmp/scwrl_2091901519.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2091901519.pdb # conformation set from SCWRL output # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1134724959.pdb -s /var/tmp/to_scwrl_1134724959.seq -o /var/tmp/from_scwrl_1134724959.pdb > /var/tmp/scwrl_1134724959.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1134724959.pdb # conformation set from SCWRL output # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_578963059.pdb -s /var/tmp/to_scwrl_578963059.seq -o /var/tmp/from_scwrl_578963059.pdb > /var/tmp/scwrl_578963059.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_578963059.pdb # conformation set from SCWRL output # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1645541574.pdb -s /var/tmp/to_scwrl_1645541574.seq -o /var/tmp/from_scwrl_1645541574.pdb > /var/tmp/scwrl_1645541574.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1645541574.pdb # conformation set from SCWRL output # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_309960663.pdb -s /var/tmp/to_scwrl_309960663.seq -o /var/tmp/from_scwrl_309960663.pdb > /var/tmp/scwrl_309960663.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_309960663.pdb # conformation set from SCWRL output # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1202921728.pdb -s /var/tmp/to_scwrl_1202921728.seq -o /var/tmp/from_scwrl_1202921728.pdb > /var/tmp/scwrl_1202921728.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1202921728.pdb # conformation set from SCWRL output # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1021848842.pdb -s /var/tmp/to_scwrl_1021848842.seq -o /var/tmp/from_scwrl_1021848842.pdb > /var/tmp/scwrl_1021848842.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1021848842.pdb # conformation set from SCWRL output # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1207534832.pdb -s /var/tmp/to_scwrl_1207534832.seq -o /var/tmp/from_scwrl_1207534832.pdb > /var/tmp/scwrl_1207534832.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1207534832.pdb # conformation set from SCWRL output # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1888838564.pdb -s /var/tmp/to_scwrl_1888838564.seq -o /var/tmp/from_scwrl_1888838564.pdb > /var/tmp/scwrl_1888838564.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1888838564.pdb # conformation set from SCWRL output # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_623815523.pdb -s /var/tmp/to_scwrl_623815523.seq -o /var/tmp/from_scwrl_623815523.pdb > /var/tmp/scwrl_623815523.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_623815523.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_764576957.pdb -s /var/tmp/to_scwrl_764576957.seq -o /var/tmp/from_scwrl_764576957.pdb > /var/tmp/scwrl_764576957.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_764576957.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 12 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_199722177.pdb -s /var/tmp/to_scwrl_199722177.seq -o /var/tmp/from_scwrl_199722177.pdb > /var/tmp/scwrl_199722177.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_199722177.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1725081572.pdb -s /var/tmp/to_scwrl_1725081572.seq -o /var/tmp/from_scwrl_1725081572.pdb > /var/tmp/scwrl_1725081572.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1725081572.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1836738546.pdb -s /var/tmp/to_scwrl_1836738546.seq -o /var/tmp/from_scwrl_1836738546.pdb > /var/tmp/scwrl_1836738546.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1836738546.pdb # conformation set from SCWRL output # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1880738762.pdb -s /var/tmp/to_scwrl_1880738762.seq -o /var/tmp/from_scwrl_1880738762.pdb > /var/tmp/scwrl_1880738762.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1880738762.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_151596677.pdb -s /var/tmp/to_scwrl_151596677.seq -o /var/tmp/from_scwrl_151596677.pdb > /var/tmp/scwrl_151596677.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_151596677.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1879541807.pdb -s /var/tmp/to_scwrl_1879541807.seq -o /var/tmp/from_scwrl_1879541807.pdb > /var/tmp/scwrl_1879541807.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1879541807.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_178490718.pdb -s /var/tmp/to_scwrl_178490718.seq -o /var/tmp/from_scwrl_178490718.pdb > /var/tmp/scwrl_178490718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_178490718.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_174027079.pdb -s /var/tmp/to_scwrl_174027079.seq -o /var/tmp/from_scwrl_174027079.pdb > /var/tmp/scwrl_174027079.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_174027079.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_700816357.pdb -s /var/tmp/to_scwrl_700816357.seq -o /var/tmp/from_scwrl_700816357.pdb > /var/tmp/scwrl_700816357.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_700816357.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_375552870.pdb -s /var/tmp/to_scwrl_375552870.seq -o /var/tmp/from_scwrl_375552870.pdb > /var/tmp/scwrl_375552870.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_375552870.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_104309044.pdb -s /var/tmp/to_scwrl_104309044.seq -o /var/tmp/from_scwrl_104309044.pdb > /var/tmp/scwrl_104309044.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_104309044.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_904169209.pdb -s /var/tmp/to_scwrl_904169209.seq -o /var/tmp/from_scwrl_904169209.pdb > /var/tmp/scwrl_904169209.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_904169209.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1731174550.pdb -s /var/tmp/to_scwrl_1731174550.seq -o /var/tmp/from_scwrl_1731174550.pdb > /var/tmp/scwrl_1731174550.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1731174550.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_910670747.pdb -s /var/tmp/to_scwrl_910670747.seq -o /var/tmp/from_scwrl_910670747.pdb > /var/tmp/scwrl_910670747.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_910670747.pdb # conformation set from SCWRL output # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_28219896.pdb -s /var/tmp/to_scwrl_28219896.seq -o /var/tmp/from_scwrl_28219896.pdb > /var/tmp/scwrl_28219896.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_28219896.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_951395063.pdb -s /var/tmp/to_scwrl_951395063.seq -o /var/tmp/from_scwrl_951395063.pdb > /var/tmp/scwrl_951395063.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_951395063.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_416731340.pdb -s /var/tmp/to_scwrl_416731340.seq -o /var/tmp/from_scwrl_416731340.pdb > /var/tmp/scwrl_416731340.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_416731340.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1398168266.pdb -s /var/tmp/to_scwrl_1398168266.seq -o /var/tmp/from_scwrl_1398168266.pdb > /var/tmp/scwrl_1398168266.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1398168266.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1315824017.pdb -s /var/tmp/to_scwrl_1315824017.seq -o /var/tmp/from_scwrl_1315824017.pdb > /var/tmp/scwrl_1315824017.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1315824017.pdb # conformation set from SCWRL output # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1771884482.pdb -s /var/tmp/to_scwrl_1771884482.seq -o /var/tmp/from_scwrl_1771884482.pdb > /var/tmp/scwrl_1771884482.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1771884482.pdb # conformation set from SCWRL output # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1342586138.pdb -s /var/tmp/to_scwrl_1342586138.seq -o /var/tmp/from_scwrl_1342586138.pdb > /var/tmp/scwrl_1342586138.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1342586138.pdb # conformation set from SCWRL output # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_303065330.pdb -s /var/tmp/to_scwrl_303065330.seq -o /var/tmp/from_scwrl_303065330.pdb > /var/tmp/scwrl_303065330.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_303065330.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_203363895.pdb -s /var/tmp/to_scwrl_203363895.seq -o /var/tmp/from_scwrl_203363895.pdb > /var/tmp/scwrl_203363895.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_203363895.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_840644067.pdb -s /var/tmp/to_scwrl_840644067.seq -o /var/tmp/from_scwrl_840644067.pdb > /var/tmp/scwrl_840644067.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_840644067.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_613025993.pdb -s /var/tmp/to_scwrl_613025993.seq -o /var/tmp/from_scwrl_613025993.pdb > /var/tmp/scwrl_613025993.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_613025993.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1406285623.pdb -s /var/tmp/to_scwrl_1406285623.seq -o /var/tmp/from_scwrl_1406285623.pdb > /var/tmp/scwrl_1406285623.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1406285623.pdb # conformation set from SCWRL output # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1862492908.pdb -s /var/tmp/to_scwrl_1862492908.seq -o /var/tmp/from_scwrl_1862492908.pdb > /var/tmp/scwrl_1862492908.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1862492908.pdb # conformation set from SCWRL output # naming current conformation gtg_AL1-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1820560825.pdb -s /var/tmp/to_scwrl_1820560825.seq -o /var/tmp/from_scwrl_1820560825.pdb > /var/tmp/scwrl_1820560825.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1820560825.pdb # conformation set from SCWRL output # naming current conformation gtg_AL2-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1147640541.pdb -s /var/tmp/to_scwrl_1147640541.seq -o /var/tmp/from_scwrl_1147640541.pdb > /var/tmp/scwrl_1147640541.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1147640541.pdb # conformation set from SCWRL output # naming current conformation gtg_AL3-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_338824784.pdb -s /var/tmp/to_scwrl_338824784.seq -o /var/tmp/from_scwrl_338824784.pdb > /var/tmp/scwrl_338824784.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_338824784.pdb # conformation set from SCWRL output # naming current conformation gtg_AL4-scwrl # ReadConformPDB reading from PDB file servers/gtg_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation gtg_AL5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_437654135.pdb -s /var/tmp/to_scwrl_437654135.seq -o /var/tmp/from_scwrl_437654135.pdb > /var/tmp/scwrl_437654135.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_437654135.pdb # conformation set from SCWRL output # naming current conformation gtg_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1347362718.pdb -s /var/tmp/to_scwrl_1347362718.seq -o /var/tmp/from_scwrl_1347362718.pdb > /var/tmp/scwrl_1347362718.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1347362718.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2063906356.pdb -s /var/tmp/to_scwrl_2063906356.seq -o /var/tmp/from_scwrl_2063906356.pdb > /var/tmp/scwrl_2063906356.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2063906356.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_126909034.pdb -s /var/tmp/to_scwrl_126909034.seq -o /var/tmp/from_scwrl_126909034.pdb > /var/tmp/scwrl_126909034.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_126909034.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1080617833.pdb -s /var/tmp/to_scwrl_1080617833.seq -o /var/tmp/from_scwrl_1080617833.pdb > /var/tmp/scwrl_1080617833.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1080617833.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 79 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_68019386.pdb -s /var/tmp/to_scwrl_68019386.seq -o /var/tmp/from_scwrl_68019386.pdb > /var/tmp/scwrl_68019386.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_68019386.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)D84.O and (T0311)V85.N only 0.000 apart, marking (T0311)V85.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2006450841.pdb -s /var/tmp/to_scwrl_2006450841.seq -o /var/tmp/from_scwrl_2006450841.pdb > /var/tmp/scwrl_2006450841.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2006450841.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 WARNING: atoms too close: (T0311)V22.O and (T0311)S23.N only 0.000 apart, marking (T0311)S23.N as missing # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1259108551.pdb -s /var/tmp/to_scwrl_1259108551.seq -o /var/tmp/from_scwrl_1259108551.pdb > /var/tmp/scwrl_1259108551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1259108551.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_242046466.pdb -s /var/tmp/to_scwrl_242046466.seq -o /var/tmp/from_scwrl_242046466.pdb > /var/tmp/scwrl_242046466.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_242046466.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_559783551.pdb -s /var/tmp/to_scwrl_559783551.seq -o /var/tmp/from_scwrl_559783551.pdb > /var/tmp/scwrl_559783551.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_559783551.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1634661421.pdb -s /var/tmp/to_scwrl_1634661421.seq -o /var/tmp/from_scwrl_1634661421.pdb > /var/tmp/scwrl_1634661421.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1634661421.pdb # conformation set from SCWRL output # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_346355510.pdb -s /var/tmp/to_scwrl_346355510.seq -o /var/tmp/from_scwrl_346355510.pdb > /var/tmp/scwrl_346355510.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_346355510.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1463952759.pdb -s /var/tmp/to_scwrl_1463952759.seq -o /var/tmp/from_scwrl_1463952759.pdb > /var/tmp/scwrl_1463952759.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1463952759.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1218352324.pdb -s /var/tmp/to_scwrl_1218352324.seq -o /var/tmp/from_scwrl_1218352324.pdb > /var/tmp/scwrl_1218352324.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1218352324.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1257026256.pdb -s /var/tmp/to_scwrl_1257026256.seq -o /var/tmp/from_scwrl_1257026256.pdb > /var/tmp/scwrl_1257026256.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1257026256.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1492172655.pdb -s /var/tmp/to_scwrl_1492172655.seq -o /var/tmp/from_scwrl_1492172655.pdb > /var/tmp/scwrl_1492172655.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1492172655.pdb # conformation set from SCWRL output # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_22263740.pdb -s /var/tmp/to_scwrl_22263740.seq -o /var/tmp/from_scwrl_22263740.pdb > /var/tmp/scwrl_22263740.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_22263740.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1673757597.pdb -s /var/tmp/to_scwrl_1673757597.seq -o /var/tmp/from_scwrl_1673757597.pdb > /var/tmp/scwrl_1673757597.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1673757597.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_742857276.pdb -s /var/tmp/to_scwrl_742857276.seq -o /var/tmp/from_scwrl_742857276.pdb > /var/tmp/scwrl_742857276.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_742857276.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1338087757.pdb -s /var/tmp/to_scwrl_1338087757.seq -o /var/tmp/from_scwrl_1338087757.pdb > /var/tmp/scwrl_1338087757.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1338087757.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1298158432.pdb -s /var/tmp/to_scwrl_1298158432.seq -o /var/tmp/from_scwrl_1298158432.pdb > /var/tmp/scwrl_1298158432.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1298158432.pdb # conformation set from SCWRL output # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_2085443414.pdb -s /var/tmp/to_scwrl_2085443414.seq -o /var/tmp/from_scwrl_2085443414.pdb > /var/tmp/scwrl_2085443414.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_2085443414.pdb # conformation set from SCWRL output # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1641153087.pdb -s /var/tmp/to_scwrl_1641153087.seq -o /var/tmp/from_scwrl_1641153087.pdb > /var/tmp/scwrl_1641153087.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1641153087.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1501522327.pdb -s /var/tmp/to_scwrl_1501522327.seq -o /var/tmp/from_scwrl_1501522327.pdb > /var/tmp/scwrl_1501522327.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1501522327.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_778603834.pdb -s /var/tmp/to_scwrl_778603834.seq -o /var/tmp/from_scwrl_778603834.pdb > /var/tmp/scwrl_778603834.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_778603834.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_106695433.pdb -s /var/tmp/to_scwrl_106695433.seq -o /var/tmp/from_scwrl_106695433.pdb > /var/tmp/scwrl_106695433.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_106695433.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_760324305.pdb -s /var/tmp/to_scwrl_760324305.seq -o /var/tmp/from_scwrl_760324305.pdb > /var/tmp/scwrl_760324305.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_760324305.pdb # conformation set from SCWRL output # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_493613095.pdb -s /var/tmp/to_scwrl_493613095.seq -o /var/tmp/from_scwrl_493613095.pdb > /var/tmp/scwrl_493613095.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_493613095.pdb # conformation set from SCWRL output # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0311 can't currently be optimized by undertaker # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 88 ; scwrl3 -i /var/tmp/to_scwrl_1927256258.pdb -s /var/tmp/to_scwrl_1927256258.seq -o /var/tmp/from_scwrl_1927256258.pdb > /var/tmp/scwrl_1927256258.log # Trying to read SCWRLed conformation from /var/tmp/from_scwrl_1927256258.pdb # conformation set from SCWRL output # naming current conformation shub_TS1-scwrl # command:CPU_time= 17.5013 sec, elapsed time= 105.557 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate_1.rdb # command:# CostConform Warning: Couldn't open file decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot or decoys//projects/compbio/experiments/undertaker/spots/near-backbone-center.spot.gz for input Trying /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot # Reading spots from /projects/compbio/experiments/undertaker/spots/near-backbone-center.spot shub_TS1-scwrl costs 0 real_cost = -195.599 shub_TS1 costs 0 real_cost = -199.271 panther2_TS1-scwrl costs 0 real_cost = -19.7613 panther2_TS1 costs 0 real_cost = -11.8601 nFOLD_TS5-scwrl costs 0 real_cost = -173.893 nFOLD_TS5 costs 0 real_cost = -153.644 nFOLD_TS4-scwrl costs 0 real_cost = -152.689 nFOLD_TS4 costs 0 real_cost = -97.4949 nFOLD_TS3-scwrl costs 0 real_cost = -204.174 nFOLD_TS3 costs 0 real_cost = -167.196 nFOLD_TS2-scwrl costs 0 real_cost = -96.901 nFOLD_TS2 costs 0 real_cost = -96.9243 nFOLD_TS1-scwrl costs 0 real_cost = -158.922 nFOLD_TS1 costs 0 real_cost = -117.619 mGen-3D_TS1-scwrl costs 0 real_cost = -214.974 mGen-3D_TS1 costs 0 real_cost = -171.196 keasar-server_TS5-scwrl costs 0 real_cost = -197.225 keasar-server_TS5 costs 0 real_cost = -185.457 keasar-server_TS4-scwrl costs 0 real_cost = -135.485 keasar-server_TS4 costs 0 real_cost = -110.213 keasar-server_TS3-scwrl costs 0 real_cost = -181.47 keasar-server_TS3 costs 0 real_cost = -173.69 keasar-server_TS2-scwrl costs 0 real_cost = -150.56 keasar-server_TS2 costs 0 real_cost = -143.421 keasar-server_TS1-scwrl costs 0 real_cost = -174.276 keasar-server_TS1 costs 0 real_cost = -158.214 karypis.srv_TS5-scwrl costs 0 real_cost = -165.502 karypis.srv_TS5 costs 0 real_cost = -176.755 karypis.srv_TS4-scwrl costs 0 real_cost = -180.996 karypis.srv_TS4 costs 0 real_cost = -172.143 karypis.srv_TS3-scwrl costs 0 real_cost = -142.02 karypis.srv_TS3 costs 0 real_cost = -147.631 karypis.srv_TS2-scwrl costs 0 real_cost = -129.894 karypis.srv_TS2 costs 0 real_cost = -130.894 karypis.srv_TS1-scwrl costs 0 real_cost = -191.507 karypis.srv_TS1 costs 0 real_cost = -192.707 karypis.srv.4_TS5-scwrl costs 0 real_cost = 200.687 karypis.srv.4_TS5 costs 0 real_cost = 200.687 karypis.srv.4_TS4-scwrl costs 0 real_cost = 98.9836 karypis.srv.4_TS4 costs 0 real_cost = 98.9836 karypis.srv.4_TS3-scwrl costs 0 real_cost = 158.846 karypis.srv.4_TS3 costs 0 real_cost = 158.846 karypis.srv.4_TS2-scwrl costs 0 real_cost = 177.861 karypis.srv.4_TS2 costs 0 real_cost = 182.823 karypis.srv.4_TS1-scwrl costs 0 real_cost = 97.8635 karypis.srv.4_TS1 costs 0 real_cost = 97.8327 karypis.srv.2_TS5-scwrl costs 0 real_cost = -169.862 karypis.srv.2_TS5 costs 0 real_cost = -169.862 karypis.srv.2_TS4-scwrl costs 0 real_cost = -166.82 karypis.srv.2_TS4 costs 0 real_cost = -166.82 karypis.srv.2_TS3-scwrl costs 0 real_cost = -219.149 karypis.srv.2_TS3 costs 0 real_cost = -219.149 karypis.srv.2_TS2-scwrl costs 0 real_cost = -209.002 karypis.srv.2_TS2 costs 0 real_cost = -209.002 karypis.srv.2_TS1-scwrl costs 0 real_cost = -149.202 karypis.srv.2_TS1 costs 0 real_cost = -148.903 gtg_AL5-scwrl costs 0 real_cost = -105.712 gtg_AL5 costs 0 real_cost = -60.6628 gtg_AL4-scwrl costs 0 real_cost = -190.128 gtg_AL4 costs 0 real_cost = -137.395 gtg_AL3-scwrl costs 0 real_cost = -208.218 gtg_AL3 costs 0 real_cost = -154.176 gtg_AL2-scwrl costs 0 real_cost = -157.565 gtg_AL2 costs 0 real_cost = -101.857 gtg_AL1-scwrl costs 0 real_cost = -141.741 gtg_AL1 costs 0 real_cost = -87.3613 forecast-s_AL5-scwrl costs 0 real_cost = 161.162 forecast-s_AL5 costs 0 real_cost = 170.269 forecast-s_AL4-scwrl costs 0 real_cost = -151.532 forecast-s_AL4 costs 0 real_cost = -121.19 forecast-s_AL3-scwrl costs 0 real_cost = -171.693 forecast-s_AL3 costs 0 real_cost = -139.393 forecast-s_AL2-scwrl costs 0 real_cost = -118.102 forecast-s_AL2 costs 0 real_cost = -69.202 forecast-s_AL1-scwrl costs 0 real_cost = -168.289 forecast-s_AL1 costs 0 real_cost = -130.902 beautshotbase_TS1-scwrl costs 0 real_cost = -174.163 beautshotbase_TS1 costs 0 real_cost = -160.563 beautshot_TS1-scwrl costs 0 real_cost = -211.956 beautshot_TS1 costs 0 real_cost = -209.859 Zhang-Server_TS5-scwrl costs 0 real_cost = -256.446 Zhang-Server_TS5 costs 0 real_cost = -252.042 Zhang-Server_TS4-scwrl costs 0 real_cost = -271.016 Zhang-Server_TS4 costs 0 real_cost = -262.662 Zhang-Server_TS3-scwrl costs 0 real_cost = -229.572 Zhang-Server_TS3 costs 0 real_cost = -220.682 Zhang-Server_TS2-scwrl costs 0 real_cost = -238.251 Zhang-Server_TS2 costs 0 real_cost = -226.511 Zhang-Server_TS1-scwrl costs 0 real_cost = -246.948 Zhang-Server_TS1 costs 0 real_cost = -231.285 UNI-EID_sfst_AL5-scwrl costs 0 real_cost = -176.458 UNI-EID_sfst_AL5 costs 0 real_cost = -133.753 UNI-EID_sfst_AL4-scwrl costs 0 real_cost = -133.355 UNI-EID_sfst_AL4 costs 0 real_cost = -92.1486 UNI-EID_sfst_AL3-scwrl costs 0 real_cost = -119.815 UNI-EID_sfst_AL3 costs 0 real_cost = -71.7723 UNI-EID_sfst_AL2-scwrl costs 0 real_cost = -164.493 UNI-EID_sfst_AL2 costs 0 real_cost = -133.793 UNI-EID_sfst_AL1-scwrl costs 0 real_cost = -117.849 UNI-EID_sfst_AL1 costs 0 real_cost = -80.3284 UNI-EID_expm_TS1-scwrl costs 0 real_cost = -182.884 UNI-EID_expm_TS1 costs 0 real_cost = -148.43 UNI-EID_bnmx_TS5-scwrl costs 0 real_cost = -162.555 UNI-EID_bnmx_TS5 costs 0 real_cost = -108.149 UNI-EID_bnmx_TS4-scwrl costs 0 real_cost = -139.112 UNI-EID_bnmx_TS4 costs 0 real_cost = -81.8628 UNI-EID_bnmx_TS3-scwrl costs 0 real_cost = -119.815 UNI-EID_bnmx_TS3 costs 0 real_cost = -71.7723 UNI-EID_bnmx_TS2-scwrl costs 0 real_cost = -172.093 UNI-EID_bnmx_TS2 costs 0 real_cost = -137.793 UNI-EID_bnmx_TS1-scwrl costs 0 real_cost = -178.193 UNI-EID_bnmx_TS1 costs 0 real_cost = -105.361 SPARKS2_TS5-scwrl costs 0 real_cost = -173.197 SPARKS2_TS5 costs 0 real_cost = -162.336 SPARKS2_TS4-scwrl costs 0 real_cost = -174.563 SPARKS2_TS4 costs 0 real_cost = -162.577 SPARKS2_TS3-scwrl costs 0 real_cost = -155.571 SPARKS2_TS3 costs 0 real_cost = -141.239 SPARKS2_TS2-scwrl costs 0 real_cost = -211.974 SPARKS2_TS2 costs 0 real_cost = -208.536 SPARKS2_TS1-scwrl costs 0 real_cost = -162.544 SPARKS2_TS1 costs 0 real_cost = -153.315 SP4_TS5-scwrl costs 0 real_cost = -162.544 SP4_TS5 costs 0 real_cost = -153.315 SP4_TS4-scwrl costs 0 real_cost = -155.571 SP4_TS4 costs 0 real_cost = -141.239 SP4_TS3-scwrl costs 0 real_cost = -166.942 SP4_TS3 costs 0 real_cost = -157.501 SP4_TS2-scwrl costs 0 real_cost = -199.279 SP4_TS2 costs 0 real_cost = -187.266 SP4_TS1-scwrl costs 0 real_cost = -195.66 SP4_TS1 costs 0 real_cost = -184.328 SP3_TS5-scwrl costs 0 real_cost = -215.322 SP3_TS5 costs 0 real_cost = -204.244 SP3_TS4-scwrl costs 0 real_cost = -162.544 SP3_TS4 costs 0 real_cost = -153.315 SP3_TS3-scwrl costs 0 real_cost = -155.571 SP3_TS3 costs 0 real_cost = -141.239 SP3_TS2-scwrl costs 0 real_cost = -224.333 SP3_TS2 costs 0 real_cost = -216.557 SP3_TS1-scwrl costs 0 real_cost = -199.279 SP3_TS1 costs 0 real_cost = -187.266 SAM_T06_server_TS5-scwrl costs 0 real_cost = -108.315 SAM_T06_server_TS5 costs 0 real_cost = -116.514 SAM_T06_server_TS4-scwrl costs 0 real_cost = -76.8699 SAM_T06_server_TS4 costs 0 real_cost = -86.5371 SAM_T06_server_TS3-scwrl costs 0 real_cost = -104.393 SAM_T06_server_TS3 costs 0 real_cost = -119.982 SAM_T06_server_TS2-scwrl costs 0 real_cost = -160.41 SAM_T06_server_TS2 costs 0 real_cost = -174.629 SAM_T06_server_TS1-scwrl costs 0 real_cost = -244.629 SAM_T06_server_TS1 costs 0 real_cost = -247.203 SAM-T99_AL5-scwrl costs 0 real_cost = -104.446 SAM-T99_AL5 costs 0 real_cost = -94.8575 SAM-T99_AL4-scwrl costs 0 real_cost = -164.507 SAM-T99_AL4 costs 0 real_cost = -134.467 SAM-T99_AL3-scwrl costs 0 real_cost = -170.886 SAM-T99_AL3 costs 0 real_cost = -137.781 SAM-T99_AL2-scwrl costs 0 real_cost = -165.997 SAM-T99_AL2 costs 0 real_cost = -135.547 SAM-T99_AL1-scwrl costs 0 real_cost = -99.6975 SAM-T99_AL1 costs 0 real_cost = -71.515 SAM-T02_AL5-scwrl costs 0 real_cost = -147.519 SAM-T02_AL5 costs 0 real_cost = -137.886 SAM-T02_AL4-scwrl costs 0 real_cost = -136.318 SAM-T02_AL4 costs 0 real_cost = -116.968 SAM-T02_AL3-scwrl costs 0 real_cost = -54.8174 SAM-T02_AL3 costs 0 real_cost = -33.7983 SAM-T02_AL2-scwrl costs 0 real_cost = -150.137 SAM-T02_AL2 costs 0 real_cost = -126.504 SAM-T02_AL1-scwrl costs 0 real_cost = -103.998 SAM-T02_AL1 costs 0 real_cost = -86.5169 ROKKY_TS5-scwrl costs 0 real_cost = -210.141 ROKKY_TS5 costs 0 real_cost = -205.358 ROKKY_TS4-scwrl costs 0 real_cost = -198.83 ROKKY_TS4 costs 0 real_cost = -192.532 ROKKY_TS3-scwrl costs 0 real_cost = -200.642 ROKKY_TS3 costs 0 real_cost = -187.255 ROKKY_TS2-scwrl costs 0 real_cost = -213.402 ROKKY_TS2 costs 0 real_cost = -214.501 ROKKY_TS1-scwrl costs 0 real_cost = -173.151 ROKKY_TS1 costs 0 real_cost = -163.783 ROBETTA_TS5-scwrl costs 0 real_cost = -209.522 ROBETTA_TS5 costs 0 real_cost = -214.013 ROBETTA_TS4-scwrl costs 0 real_cost = -222.927 ROBETTA_TS4 costs 0 real_cost = -215.069 ROBETTA_TS3-scwrl costs 0 real_cost = -186.565 ROBETTA_TS3 costs 0 real_cost = -183.184 ROBETTA_TS2-scwrl costs 0 real_cost = -167.316 ROBETTA_TS2 costs 0 real_cost = -166.392 ROBETTA_TS1-scwrl costs 0 real_cost = -201.543 ROBETTA_TS1 costs 0 real_cost = -192.709 RAPTOR_TS5-scwrl costs 0 real_cost = -155.097 RAPTOR_TS5 costs 0 real_cost = -156.305 RAPTOR_TS4-scwrl costs 0 real_cost = -208.241 RAPTOR_TS4 costs 0 real_cost = -204.433 RAPTOR_TS3-scwrl costs 0 real_cost = -215.75 RAPTOR_TS3 costs 0 real_cost = -206.975 RAPTOR_TS2-scwrl costs 0 real_cost = -192.364 RAPTOR_TS2 costs 0 real_cost = -195.887 RAPTOR_TS1-scwrl costs 0 real_cost = -229.733 RAPTOR_TS1 costs 0 real_cost = -221.416 RAPTORESS_TS5-scwrl costs 0 real_cost = -71.8579 RAPTORESS_TS5 costs 0 real_cost = -57.3923 RAPTORESS_TS4-scwrl costs 0 real_cost = -175.186 RAPTORESS_TS4 costs 0 real_cost = -171.782 RAPTORESS_TS3-scwrl costs 0 real_cost = -214.265 RAPTORESS_TS3 costs 0 real_cost = -196.195 RAPTORESS_TS2-scwrl costs 0 real_cost = -116.564 RAPTORESS_TS2 costs 0 real_cost = -113.191 RAPTORESS_TS1-scwrl costs 0 real_cost = -232.414 RAPTORESS_TS1 costs 0 real_cost = -225.361 RAPTOR-ACE_TS5-scwrl costs 0 real_cost = -224.333 RAPTOR-ACE_TS5 costs 0 real_cost = -216.557 RAPTOR-ACE_TS4-scwrl costs 0 real_cost = -221.224 RAPTOR-ACE_TS4 costs 0 real_cost = -216.367 RAPTOR-ACE_TS3-scwrl costs 0 real_cost = -241.65 RAPTOR-ACE_TS3 costs 0 real_cost = -228.165 RAPTOR-ACE_TS2-scwrl costs 0 real_cost = -194.609 RAPTOR-ACE_TS2 costs 0 real_cost = -197.289 RAPTOR-ACE_TS1-scwrl costs 0 real_cost = -244.595 RAPTOR-ACE_TS1 costs 0 real_cost = -226.89 Pmodeller6_TS5-scwrl costs 0 real_cost = -198.475 Pmodeller6_TS5 costs 0 real_cost = -204.908 Pmodeller6_TS4-scwrl costs 0 real_cost = -209.522 Pmodeller6_TS4 costs 0 real_cost = -214.013 Pmodeller6_TS3-scwrl costs 0 real_cost = -233.118 Pmodeller6_TS3 costs 0 real_cost = -234.012 Pmodeller6_TS2-scwrl costs 0 real_cost = -164.26 Pmodeller6_TS2 costs 0 real_cost = -177.272 Pmodeller6_TS1-scwrl costs 0 real_cost = -205.502 Pmodeller6_TS1 costs 0 real_cost = -209.296 Phyre-2_TS5-scwrl costs 0 real_cost = -175.493 Phyre-2_TS5 costs 0 real_cost = -178.016 Phyre-2_TS4-scwrl costs 0 real_cost = -205.293 Phyre-2_TS4 costs 0 real_cost = -208.324 Phyre-2_TS3-scwrl costs 0 real_cost = -175.493 Phyre-2_TS3 costs 0 real_cost = -178.016 Phyre-2_TS2-scwrl costs 0 real_cost = -175.493 Phyre-2_TS2 costs 0 real_cost = -178.016 Phyre-2_TS1-scwrl costs 0 real_cost = -205.293 Phyre-2_TS1 costs 0 real_cost = -208.324 Phyre-1_TS1-scwrl costs 0 real_cost = -127.487 Phyre-1_TS1 costs 0 real_cost = -120.438 Pcons6_TS5-scwrl costs 0 real_cost = -154.464 Pcons6_TS5 costs 0 real_cost = -167.732 Pcons6_TS4-scwrl costs 0 real_cost = -188.607 Pcons6_TS4 costs 0 real_cost = -196.973 Pcons6_TS3-scwrl costs 0 real_cost = -183.8 Pcons6_TS3 costs 0 real_cost = -185.8 Pcons6_TS2-scwrl costs 0 real_cost = -182.683 Pcons6_TS2 costs 0 real_cost = -192.015 Pcons6_TS1-scwrl costs 0 real_cost = -161.55 Pcons6_TS1 costs 0 real_cost = -177.922 PROTINFO_TS5-scwrl costs 0 real_cost = -181.549 PROTINFO_TS5 costs 0 real_cost = -180.014 PROTINFO_TS4-scwrl costs 0 real_cost = -53.2643 PROTINFO_TS4 costs 0 real_cost = -54.8919 PROTINFO_TS3-scwrl costs 0 real_cost = -232.056 PROTINFO_TS3 costs 0 real_cost = -230.989 PROTINFO_TS2-scwrl costs 0 real_cost = -148.87 PROTINFO_TS2 costs 0 real_cost = -144.566 PROTINFO_TS1-scwrl costs 0 real_cost = -258.751 PROTINFO_TS1 costs 0 real_cost = -255.167 PROTINFO-AB_TS5-scwrl costs 0 real_cost = -258.751 PROTINFO-AB_TS5 costs 0 real_cost = -255.167 PROTINFO-AB_TS4-scwrl costs 0 real_cost = 65.5007 PROTINFO-AB_TS4 costs 0 real_cost = 73.8119 PROTINFO-AB_TS3-scwrl costs 0 real_cost = -103.058 PROTINFO-AB_TS3 costs 0 real_cost = -94.7719 PROTINFO-AB_TS2-scwrl costs 0 real_cost = 68.3488 PROTINFO-AB_TS2 costs 0 real_cost = 78.772 PROTINFO-AB_TS1-scwrl costs 0 real_cost = -104.152 PROTINFO-AB_TS1 costs 0 real_cost = -87.6473 POMYSL_TS5-scwrl costs 0 real_cost = 111.435 POMYSL_TS5 costs 0 real_cost = 131.803 POMYSL_TS4-scwrl costs 0 real_cost = 170.746 POMYSL_TS4 costs 0 real_cost = 185.941 POMYSL_TS3-scwrl costs 0 real_cost = 115.463 POMYSL_TS3 costs 0 real_cost = 153.18 POMYSL_TS2-scwrl costs 0 real_cost = 143.896 POMYSL_TS2 costs 0 real_cost = 131.716 POMYSL_TS1-scwrl costs 0 real_cost = 139.3 POMYSL_TS1 costs 0 real_cost = 123.226 NN_PUT_lab_TS1-scwrl costs 0 real_cost = -178.207 NN_PUT_lab_TS1 costs 0 real_cost = -177.432 MetaTasser_TS5-scwrl costs 0 real_cost = -139.457 MetaTasser_TS5 costs 0 real_cost = -124.422 MetaTasser_TS4-scwrl costs 0 real_cost = -167.774 MetaTasser_TS4 costs 0 real_cost = -164.069 MetaTasser_TS3-scwrl costs 0 real_cost = -161.47 MetaTasser_TS3 costs 0 real_cost = -164.315 MetaTasser_TS2-scwrl costs 0 real_cost = -150.259 MetaTasser_TS2 costs 0 real_cost = -155.493 MetaTasser_TS1-scwrl costs 0 real_cost = -109.406 MetaTasser_TS1 costs 0 real_cost = -120.49 Ma-OPUS-server_TS5-scwrl costs 0 real_cost = -174.104 Ma-OPUS-server_TS5 costs 0 real_cost = -166.66 Ma-OPUS-server_TS4-scwrl costs 0 real_cost = -142.642 Ma-OPUS-server_TS4 costs 0 real_cost = -127.277 Ma-OPUS-server_TS3-scwrl costs 0 real_cost = -191.86 Ma-OPUS-server_TS3 costs 0 real_cost = -188.038 Ma-OPUS-server_TS2-scwrl costs 0 real_cost = -188.889 Ma-OPUS-server_TS2 costs 0 real_cost = -172.633 Ma-OPUS-server_TS1-scwrl costs 0 real_cost = 136.286 Ma-OPUS-server_TS1 costs 0 real_cost = 147.462 MIG_FROST_AL1-scwrl costs 0 real_cost = 90.0887 MIG_FROST_AL1 costs 0 real_cost = 113.157 LOOPP_TS5-scwrl costs 0 real_cost = -118.889 LOOPP_TS5 costs 0 real_cost = -124.694 LOOPP_TS4-scwrl costs 0 real_cost = -63.2007 LOOPP_TS4 costs 0 real_cost = -67.2662 LOOPP_TS3-scwrl costs 0 real_cost = -95.4032 LOOPP_TS3 costs 0 real_cost = -100.88 LOOPP_TS2-scwrl costs 0 real_cost = -185.463 LOOPP_TS2 costs 0 real_cost = -179.837 LOOPP_TS1-scwrl costs 0 real_cost = -178.207 LOOPP_TS1 costs 0 real_cost = -177.432 Huber-Torda-Server_TS5-scwrl costs 0 real_cost = 247.462 Huber-Torda-Server_TS5 costs 0 real_cost = 266.95 Huber-Torda-Server_TS4-scwrl costs 0 real_cost = -123.177 Huber-Torda-Server_TS4 costs 0 real_cost = -122.263 Huber-Torda-Server_TS3-scwrl costs 0 real_cost = -61.8446 Huber-Torda-Server_TS3 costs 0 real_cost = -56.3072 Huber-Torda-Server_TS2-scwrl costs 0 real_cost = -128.993 Huber-Torda-Server_TS2 costs 0 real_cost = -114.806 Huber-Torda-Server_TS1-scwrl costs 0 real_cost = -175.493 Huber-Torda-Server_TS1 costs 0 real_cost = -153.631 HHpred3_TS1-scwrl costs 0 real_cost = -230.104 HHpred3_TS1 costs 0 real_cost = -225.733 HHpred2_TS1-scwrl costs 0 real_cost = -230.104 HHpred2_TS1 costs 0 real_cost = -225.733 HHpred1_TS1-scwrl costs 0 real_cost = -201.388 HHpred1_TS1 costs 0 real_cost = -200.27 GeneSilicoMetaServer_TS5-scwrl costs 0 real_cost = -137.389 GeneSilicoMetaServer_TS5 costs 0 real_cost = -134.365 GeneSilicoMetaServer_TS4-scwrl costs 0 real_cost = -190.915 GeneSilicoMetaServer_TS4 costs 0 real_cost = -179.24 GeneSilicoMetaServer_TS3-scwrl costs 0 real_cost = -202.418 GeneSilicoMetaServer_TS3 costs 0 real_cost = -204.131 GeneSilicoMetaServer_TS2-scwrl costs 0 real_cost = -186.358 GeneSilicoMetaServer_TS2 costs 0 real_cost = -181.432 GeneSilicoMetaServer_TS1-scwrl costs 0 real_cost = -212.865 GeneSilicoMetaServer_TS1 costs 0 real_cost = -205.331 FUNCTION_TS5-scwrl costs 0 real_cost = -221.153 FUNCTION_TS5 costs 0 real_cost = -213.534 FUNCTION_TS4-scwrl costs 0 real_cost = -212.467 FUNCTION_TS4 costs 0 real_cost = -220.375 FUNCTION_TS3-scwrl costs 0 real_cost = -143.187 FUNCTION_TS3 costs 0 real_cost = -129.26 FUNCTION_TS2-scwrl costs 0 real_cost = -158.61 FUNCTION_TS2 costs 0 real_cost = -153.448 FUNCTION_TS1-scwrl costs 0 real_cost = -201.344 FUNCTION_TS1 costs 0 real_cost = -194.462 FUGUE_AL5-scwrl costs 0 real_cost = -140.512 FUGUE_AL5 costs 0 real_cost = -82.6628 FUGUE_AL4-scwrl costs 0 real_cost = -79.0291 FUGUE_AL4 costs 0 real_cost = -79.0291 FUGUE_AL3-scwrl costs 0 real_cost = -149.272 FUGUE_AL3 costs 0 real_cost = -107.246 FUGUE_AL2-scwrl costs 0 real_cost = -179.789 FUGUE_AL2 costs 0 real_cost = -124.228 FUGUE_AL1-scwrl costs 0 real_cost = -120.05 FUGUE_AL1 costs 0 real_cost = -65.5561 FUGMOD_TS5-scwrl costs 0 real_cost = -139.947 FUGMOD_TS5 costs 0 real_cost = -127.833 FUGMOD_TS4-scwrl costs 0 real_cost = -149.572 FUGMOD_TS4 costs 0 real_cost = -146.875 FUGMOD_TS3-scwrl costs 0 real_cost = -169.567 FUGMOD_TS3 costs 0 real_cost = -144.234 FUGMOD_TS2-scwrl costs 0 real_cost = -186.398 FUGMOD_TS2 costs 0 real_cost = -175.652 FUGMOD_TS1-scwrl costs 0 real_cost = -122.477 FUGMOD_TS1 costs 0 real_cost = -113.066 FPSOLVER-SERVER_TS5-scwrl costs 0 real_cost = 194.374 FPSOLVER-SERVER_TS5 costs 0 real_cost = 188.201 FPSOLVER-SERVER_TS4-scwrl costs 0 real_cost = 237.742 FPSOLVER-SERVER_TS4 costs 0 real_cost = 222.652 FPSOLVER-SERVER_TS3-scwrl costs 0 real_cost = 213.773 FPSOLVER-SERVER_TS3 costs 0 real_cost = 203.097 FPSOLVER-SERVER_TS2-scwrl costs 0 real_cost = 207.667 FPSOLVER-SERVER_TS2 costs 0 real_cost = 209.571 FPSOLVER-SERVER_TS1-scwrl costs 0 real_cost = 214.843 FPSOLVER-SERVER_TS1 costs 0 real_cost = 215.022 FORTE2_AL5-scwrl costs 0 real_cost = -203.774 FORTE2_AL5 costs 0 real_cost = -150.677 FORTE2_AL4-scwrl costs 0 real_cost = -127.19 FORTE2_AL4 costs 0 real_cost = -66.2291 FORTE2_AL3-scwrl costs 0 real_cost = -79.0291 FORTE2_AL3 costs 0 real_cost = -79.0291 FORTE2_AL2-scwrl costs 0 real_cost = -158.922 FORTE2_AL2 costs 0 real_cost = -101.974 FORTE2_AL1-scwrl costs 0 real_cost = -140.512 FORTE2_AL1 costs 0 real_cost = -82.6628 FORTE1_AL5-scwrl costs 0 real_cost = -208.322 FORTE1_AL5 costs 0 real_cost = -155.585 FORTE1_AL4-scwrl costs 0 real_cost = -203.774 FORTE1_AL4 costs 0 real_cost = -150.677 FORTE1_AL3-scwrl costs 0 real_cost = -158.922 FORTE1_AL3 costs 0 real_cost = -101.974 FORTE1_AL2-scwrl costs 0 real_cost = -79.0291 FORTE1_AL2 costs 0 real_cost = -79.0291 FORTE1_AL1-scwrl costs 0 real_cost = -140.512 FORTE1_AL1 costs 0 real_cost = -82.6628 FOLDpro_TS5-scwrl costs 0 real_cost = -196.392 FOLDpro_TS5 costs 0 real_cost = -186.08 FOLDpro_TS4-scwrl costs 0 real_cost = -215.906 FOLDpro_TS4 costs 0 real_cost = -204.598 FOLDpro_TS3-scwrl costs 0 real_cost = -250.792 FOLDpro_TS3 costs 0 real_cost = -246.195 FOLDpro_TS2-scwrl costs 0 real_cost = -163.865 FOLDpro_TS2 costs 0 real_cost = -158.216 FOLDpro_TS1-scwrl costs 0 real_cost = -261.654 FOLDpro_TS1 costs 0 real_cost = -254.533 FAMS_TS5-scwrl costs 0 real_cost = -179.607 FAMS_TS5 costs 0 real_cost = -179.989 FAMS_TS4-scwrl costs 0 real_cost = -177.576 FAMS_TS4 costs 0 real_cost = -177.296 FAMS_TS3-scwrl costs 0 real_cost = -148.253 FAMS_TS3 costs 0 real_cost = -149.241 FAMS_TS2-scwrl costs 0 real_cost = -186.596 FAMS_TS2 costs 0 real_cost = -183.623 FAMS_TS1-scwrl costs 0 real_cost = -136.561 FAMS_TS1 costs 0 real_cost = -137.694 FAMSD_TS5-scwrl costs 0 real_cost = -152.952 FAMSD_TS5 costs 0 real_cost = -143.145 FAMSD_TS4-scwrl costs 0 real_cost = -109.631 FAMSD_TS4 costs 0 real_cost = -109.019 FAMSD_TS3-scwrl costs 0 real_cost = -147.777 FAMSD_TS3 costs 0 real_cost = -144.299 FAMSD_TS2-scwrl costs 0 real_cost = -172.579 FAMSD_TS2 costs 0 real_cost = -167.245 FAMSD_TS1-scwrl costs 0 real_cost = -145.571 FAMSD_TS1 costs 0 real_cost = -130.428 Distill_TS5-scwrl costs 0 real_cost = 206.669 Distill_TS4-scwrl costs 0 real_cost = 231.081 Distill_TS3-scwrl costs 0 real_cost = 218.956 Distill_TS2-scwrl costs 0 real_cost = 212.184 Distill_TS1-scwrl costs 0 real_cost = 186.062 CaspIta-FOX_TS5-scwrl costs 0 real_cost = 56.2151 CaspIta-FOX_TS5 costs 0 real_cost = 56.269 CaspIta-FOX_TS4-scwrl costs 0 real_cost = -75.6487 CaspIta-FOX_TS4 costs 0 real_cost = -52.9429 CaspIta-FOX_TS3-scwrl costs 0 real_cost = -63.1225 CaspIta-FOX_TS3 costs 0 real_cost = -65.1814 CaspIta-FOX_TS2-scwrl costs 0 real_cost = -51.8891 CaspIta-FOX_TS2 costs 0 real_cost = -55.6179 CaspIta-FOX_TS1-scwrl costs 0 real_cost = -129.747 CaspIta-FOX_TS1 costs 0 real_cost = -114.671 CPHmodels_TS1-scwrl costs 0 real_cost = -36.4629 CPHmodels_TS1 costs 0 real_cost = -43.6257 CIRCLE_TS5-scwrl costs 0 real_cost = -179.607 CIRCLE_TS5 costs 0 real_cost = -179.989 CIRCLE_TS4-scwrl costs 0 real_cost = -120.206 CIRCLE_TS4 costs 0 real_cost = -112.838 CIRCLE_TS3-scwrl costs 0 real_cost = -177.576 CIRCLE_TS3 costs 0 real_cost = -177.296 CIRCLE_TS2-scwrl costs 0 real_cost = -148.253 CIRCLE_TS2 costs 0 real_cost = -149.241 CIRCLE_TS1-scwrl costs 0 real_cost = -186.596 CIRCLE_TS1 costs 0 real_cost = -183.623 Bilab-ENABLE_TS5-scwrl costs 0 real_cost = -191.051 Bilab-ENABLE_TS5 costs 0 real_cost = -191.051 Bilab-ENABLE_TS4-scwrl costs 0 real_cost = -190.894 Bilab-ENABLE_TS4 costs 0 real_cost = -190.894 Bilab-ENABLE_TS3-scwrl costs 0 real_cost = -185.798 Bilab-ENABLE_TS3 costs 0 real_cost = -185.798 Bilab-ENABLE_TS2-scwrl costs 0 real_cost = -190.95 Bilab-ENABLE_TS2 costs 0 real_cost = -190.95 Bilab-ENABLE_TS1-scwrl costs 0 real_cost = -188.643 Bilab-ENABLE_TS1 costs 0 real_cost = -188.643 BayesHH_TS1-scwrl costs 0 real_cost = 26.5194 BayesHH_TS1 costs 0 real_cost = 41.6122 ABIpro_TS5-scwrl costs 0 real_cost = -20.6903 ABIpro_TS5 costs 0 real_cost = -20.6903 ABIpro_TS4-scwrl costs 0 real_cost = -20.8995 ABIpro_TS4 costs 0 real_cost = -20.8995 ABIpro_TS3-scwrl costs 0 real_cost = 61.9252 ABIpro_TS3 costs 0 real_cost = 61.9252 ABIpro_TS2-scwrl costs 0 real_cost = 102.029 ABIpro_TS2 costs 0 real_cost = 102.029 ABIpro_TS1-scwrl costs 0 real_cost = 85.914 ABIpro_TS1 costs 0 real_cost = 85.914 3Dpro_TS5-scwrl costs 0 real_cost = -252.195 3Dpro_TS5 costs 0 real_cost = -233.601 3Dpro_TS4-scwrl costs 0 real_cost = -179.907 3Dpro_TS4 costs 0 real_cost = -173.523 3Dpro_TS3-scwrl costs 0 real_cost = -134.319 3Dpro_TS3 costs 0 real_cost = -129.18 3Dpro_TS2-scwrl costs 0 real_cost = -40.0001 3Dpro_TS2 costs 0 real_cost = -30.2217 3Dpro_TS1-scwrl costs 0 real_cost = -221.872 3Dpro_TS1 costs 0 real_cost = -209.029 3D-JIGSAW_TS5-scwrl costs 0 real_cost = -164.136 3D-JIGSAW_TS5 costs 0 real_cost = -142.826 3D-JIGSAW_TS4-scwrl costs 0 real_cost = -118.387 3D-JIGSAW_TS4 costs 0 real_cost = -115.839 3D-JIGSAW_TS3-scwrl costs 0 real_cost = -165.803 3D-JIGSAW_TS3 costs 0 real_cost = -158.914 3D-JIGSAW_TS2-scwrl costs 0 real_cost = -150.442 3D-JIGSAW_TS2 costs 0 real_cost = -141.601 3D-JIGSAW_TS1-scwrl costs 0 real_cost = -151.732 3D-JIGSAW_TS1 costs 0 real_cost = -146.814 3D-JIGSAW_RECOM_TS5-scwrl costs 0 real_cost = -136.898 3D-JIGSAW_RECOM_TS5 costs 0 real_cost = -116.735 3D-JIGSAW_RECOM_TS4-scwrl costs 0 real_cost = -89.2921 3D-JIGSAW_RECOM_TS4 costs 0 real_cost = -88.0882 3D-JIGSAW_RECOM_TS3-scwrl costs 0 real_cost = -127.795 3D-JIGSAW_RECOM_TS3 costs 0 real_cost = -125.349 3D-JIGSAW_RECOM_TS2-scwrl costs 0 real_cost = -129.877 3D-JIGSAW_RECOM_TS2 costs 0 real_cost = -113.331 3D-JIGSAW_RECOM_TS1-scwrl costs 0 real_cost = -90.2939 3D-JIGSAW_RECOM_TS1 costs 0 real_cost = -82.4735 3D-JIGSAW_POPULUS_TS5-scwrl costs 0 real_cost = -107.598 3D-JIGSAW_POPULUS_TS5 costs 0 real_cost = -114.605 3D-JIGSAW_POPULUS_TS4-scwrl costs 0 real_cost = -146.263 3D-JIGSAW_POPULUS_TS4 costs 0 real_cost = -147.189 3D-JIGSAW_POPULUS_TS3-scwrl costs 0 real_cost = -159.565 3D-JIGSAW_POPULUS_TS3 costs 0 real_cost = -163.23 3D-JIGSAW_POPULUS_TS2-scwrl costs 0 real_cost = -67.6323 3D-JIGSAW_POPULUS_TS2 costs 0 real_cost = -67.2948 3D-JIGSAW_POPULUS_TS1-scwrl costs 0 real_cost = -120.456 3D-JIGSAW_POPULUS_TS1 costs 0 real_cost = -127.971 dimer//try8MoveCtermOutTake2.renum costs 0 real_cost = -153.959 dimer//dimer-2b5aA costs 0 real_cost = -153.931 dimer//dimer-1utxA costs 0 real_cost = -153.874 try8MoveCtermOutTake2.renum.pdb.gz costs 0 real_cost = -153.959 helixDownFromTry6.renum.pdb.gz costs 0 real_cost = -259.503 fromTry4breakatS75.renum.pdb.gz costs 0 real_cost = -244.389 fromTry1cTermRotAndCap.renum.pdb.gz costs 0 real_cost = -251.207 T0311.try9-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -253.912 T0311.try9-opt2.pdb.gz costs 0 real_cost = -257.216 T0311.try9-opt2.gromacs0.pdb.gz costs 0 real_cost = -259.112 T0311.try9-opt1.pdb.gz costs 0 real_cost = -257.349 T0311.try9-opt1-scwrl.pdb.gz costs 0 real_cost = -251.857 T0311.try8-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -254.965 T0311.try8-opt2.pdb.gz costs 0 real_cost = -259.278 T0311.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -246.474 T0311.try8-opt2.gromacs0.pdb.gz costs 0 real_cost = -254.775 T0311.try8-opt1.pdb.gz costs 0 real_cost = -258.748 T0311.try8-opt1-scwrl.pdb.gz costs 0 real_cost = -252.364 T0311.try7-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -248.217 T0311.try7-opt2.pdb.gz costs 0 real_cost = -252.519 T0311.try7-opt2.gromacs0.pdb.gz costs 0 real_cost = -249.892 T0311.try7-opt1.pdb.gz costs 0 real_cost = -254.707 T0311.try7-opt1-scwrl.pdb.gz costs 0 real_cost = -250.098 T0311.try6-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -256.82 T0311.try6-opt2.pdb.gz costs 0 real_cost = -259.522 T0311.try6-opt2.gromacs0.pdb.gz costs 0 real_cost = -254.854 T0311.try6-opt1.pdb.gz costs 0 real_cost = -254.331 T0311.try6-opt1-scwrl.pdb.gz costs 0 real_cost = -249.726 T0311.try5-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -249.786 T0311.try5-opt2.pdb.gz costs 0 real_cost = -251.245 T0311.try5-opt2.gromacs0.pdb.gz costs 0 real_cost = -247.154 T0311.try5-opt1.pdb.gz costs 0 real_cost = -244.821 T0311.try5-opt1-scwrl.pdb.gz costs 0 real_cost = -245.201 T0311.try4-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -248.138 T0311.try4-opt2.pdb.gz costs 0 real_cost = -244.385 T0311.try4-opt2.gromacs0.pdb.gz costs 0 real_cost = -243.393 T0311.try4-opt1.pdb.gz costs 0 real_cost = -244.622 T0311.try4-opt1-scwrl.pdb.gz costs 0 real_cost = -245.64 T0311.try3-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -251.202 T0311.try3-opt2.pdb.gz costs 0 real_cost = -253.957 T0311.try3-opt2.gromacs0.pdb.gz costs 0 real_cost = -253.749 T0311.try3-opt1.pdb.gz costs 0 real_cost = -253.056 T0311.try3-opt1-scwrl.pdb.gz costs 0 real_cost = -247.513 T0311.try2-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -247.187 T0311.try2-opt2.pdb.gz costs 0 real_cost = -244.631 T0311.try2-opt2.gromacs0.pdb.gz costs 0 real_cost = -244.257 T0311.try2-opt1.pdb.gz costs 0 real_cost = -247.66 T0311.try2-opt1-scwrl.pdb.gz costs 0 real_cost = -243.596 T0311.try12-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -255.016 T0311.try12-opt2.pdb.gz costs 0 real_cost = -255.698 T0311.try12-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -251.004 T0311.try12-opt2.gromacs0.pdb.gz costs 0 real_cost = -252.128 T0311.try12-opt1.pdb.gz costs 0 real_cost = -257.589 T0311.try12-opt1-scwrl.pdb.gz costs 0 real_cost = -255.328 T0311.try11-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -251.177 T0311.try11-opt2.pdb.gz costs 0 real_cost = -257.325 T0311.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -249.191 T0311.try11-opt2.gromacs0.pdb.gz costs 0 real_cost = -255.602 T0311.try11-opt1.pdb.gz costs 0 real_cost = -255.655 T0311.try11-opt1-scwrl.pdb.gz costs 0 real_cost = -254.203 T0311.try10-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -257.283 T0311.try10-opt2.pdb.gz costs 0 real_cost = -260.785 T0311.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 0 real_cost = -252.74 T0311.try10-opt2.gromacs0.pdb.gz costs 0 real_cost = -255.921 T0311.try10-opt1.pdb.gz costs 0 real_cost = -261.247 T0311.try10-opt1-scwrl.pdb.gz costs 0 real_cost = -252.247 T0311.try1-opt2.repack-nonPC.pdb.gz costs 0 real_cost = -245.642 T0311.try1-opt2.pdb.gz costs 0 real_cost = -251.219 T0311.try1-opt2.gromacs0.pdb.gz costs 0 real_cost = -248.009 T0311.try1-opt1.pdb.gz costs 0 real_cost = -249.225 T0311.try1-opt1-scwrl.pdb.gz costs 0 real_cost = -243.132 ../model5.ts-submitted costs 0 real_cost = -259.533 ../model4.ts-submitted costs 0 real_cost = -257.145 ../model3.ts-submitted costs 0 real_cost = -251.341 ../model2.ts-submitted costs 0 real_cost = -250.994 ../model1.ts-submitted costs 0 real_cost = -255.438 align5 costs 0 real_cost = -127.044 align4 costs 0 real_cost = -70.8136 align3 costs 0 real_cost = -118.746 align2 costs 0 real_cost = -174.917 align1 costs 0 real_cost = -116.764 T0311.try1-opt2.pdb costs 0 real_cost = -251.219 model5-scwrl costs 0 real_cost = -253.127 model5.ts-submitted costs 0 real_cost = -259.533 model4-scwrl costs 0 real_cost = -251.866 model4.ts-submitted costs 0 real_cost = -257.145 model3-scwrl costs 0 real_cost = -244.272 model3.ts-submitted costs 0 real_cost = -251.341 model2-scwrl costs 0 real_cost = -250.4 model2.ts-submitted costs 0 real_cost = -250.994 model1-scwrl costs 0 real_cost = -255.048 model1.ts-submitted costs 0 real_cost = -255.438 T0311_1.real.pdb costs 0 real_cost = -843 # command:CPU_time= 71.6581 sec, elapsed time= 159.972 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate_1.rdb > sort.tmp mv -f sort.tmp decoys/evaluate_1.rdb mv -f decoys/evaluate_1.pretty decoys/evaluate_1.pretty.old mv: cannot stat `decoys/evaluate_1.pretty': No such file or directory make: [decoys/evaluate_1.pretty] Error 1 (ignored) /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate_1.rdb > decoys/evaluate_1.pretty