Best Alignments for T0311

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1utxA/T0311-1utxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1utxA/T0311-1utxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5582e-086.46e-27 a.35.1.3
2b5aA/T0311-2b5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b5aA/T0311-2b5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3016e-073.41e-28
1lliA/T0311-1lliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lliA/T0311-1lliA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0513e-078.70e-26 1lmb3 a.35.1.2
1y7yA/T0311-1y7yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y7yA/T0311-1y7yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6446e-073.00e-26
1adr/T0311-1adr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1adr/T0311-1adr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5348e-061.44e-25 1r69 a.35.1.2
1y9qA/T0311-1y9qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y9qA/T0311-1y9qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2473e-065.71e-21
1b0nA/T0311-1b0nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b0nA/T0311-1b0nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2327e-054.16e-23 1b0nA a.34.1.1
a.35.1.3
2a6cA/T0311-2a6cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a6cA/T0311-2a6cA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.6944e-055.74e-20
2bnmA/T0311-2bnmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bnmA/T0311-2bnmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1065e-042.16e-21
1zzcA/T0311-1zzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zzcA/T0311-1zzcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4220e-048.40e-21

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001