# TARGET T0311 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0311.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 219 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.019 0.023 0.004 0.009 0.264 0.682 2 K 0.059 0.242 0.006 0.020 0.287 0.387 3 M 0.065 0.064 0.012 0.022 0.444 0.392 4 A 0.022 0.018 0.019 0.010 0.727 0.204 5 N 0.026 0.051 0.007 0.003 0.587 0.325 6 H 0.013 0.043 0.002 0.005 0.286 0.651 7 P 0.008 0.062 0.002 0.007 0.222 0.699 8 R 0.011 0.153 0.003 0.012 0.621 0.201 9 P 0.023 0.017 0.008 0.036 0.750 0.166 10 G 0.016 0.007 0.017 0.054 0.748 0.156 11 D 0.062 0.038 0.057 0.241 0.513 0.088 12 I 0.068 0.066 0.072 0.503 0.158 0.133 13 I 0.019 0.012 0.086 0.653 0.129 0.099 14 Q 0.005 0.001 0.190 0.644 0.120 0.039 15 E 0.004 0.002 0.091 0.755 0.094 0.054 16 S 0.002 0.004 0.070 0.827 0.075 0.021 17 L 0.003 0.004 0.057 0.837 0.074 0.024 18 D 0.005 0.001 0.138 0.646 0.175 0.035 19 E 0.003 0.001 0.282 0.549 0.136 0.029 20 L 0.005 0.001 0.179 0.397 0.278 0.140 21 N 0.006 0.002 0.020 0.019 0.278 0.675 22 V 0.018 0.007 0.002 0.004 0.136 0.834 23 S 0.020 0.015 0.001 0.006 0.073 0.886 24 L 0.002 0.001 0.015 0.939 0.031 0.012 25 R 0.001 0.001 0.008 0.978 0.013 0.001 26 E 0.001 0.001 0.005 0.984 0.010 0.001 27 F 0.001 0.001 0.002 0.991 0.005 0.001 28 A 0.001 0.001 0.002 0.989 0.006 0.002 29 R 0.001 0.001 0.008 0.980 0.009 0.002 30 A 0.001 0.001 0.009 0.974 0.011 0.006 31 M 0.001 0.001 0.005 0.915 0.019 0.060 32 E 0.001 0.001 0.001 0.011 0.029 0.959 33 I 0.002 0.005 0.001 0.004 0.054 0.936 34 A 0.003 0.003 0.001 0.010 0.051 0.933 35 P 0.001 0.001 0.043 0.911 0.023 0.021 36 S 0.001 0.001 0.037 0.943 0.014 0.006 37 T 0.001 0.001 0.028 0.964 0.005 0.002 38 A 0.001 0.001 0.002 0.997 0.001 0.001 39 S 0.001 0.001 0.001 0.997 0.001 0.001 40 R 0.001 0.001 0.002 0.996 0.002 0.001 41 L 0.001 0.001 0.001 0.993 0.004 0.001 42 L 0.001 0.001 0.002 0.990 0.006 0.002 43 T 0.001 0.001 0.003 0.956 0.022 0.018 44 G 0.004 0.001 0.006 0.429 0.167 0.392 45 K 0.029 0.021 0.023 0.171 0.237 0.520 46 A 0.047 0.032 0.046 0.113 0.315 0.446 47 A 0.022 0.014 0.071 0.097 0.250 0.546 48 L 0.016 0.037 0.013 0.062 0.198 0.674 49 T 0.003 0.004 0.002 0.044 0.078 0.870 50 P 0.001 0.001 0.007 0.983 0.006 0.004 51 E 0.001 0.001 0.006 0.988 0.005 0.001 52 M 0.001 0.001 0.007 0.989 0.003 0.001 53 A 0.001 0.001 0.001 0.998 0.001 0.001 54 I 0.001 0.001 0.001 0.998 0.001 0.001 55 K 0.001 0.001 0.001 0.998 0.001 0.001 56 L 0.001 0.001 0.001 0.996 0.002 0.001 57 S 0.001 0.001 0.001 0.992 0.005 0.001 58 V 0.001 0.001 0.005 0.976 0.013 0.006 59 V 0.001 0.001 0.009 0.948 0.027 0.014 60 I 0.003 0.002 0.017 0.809 0.074 0.095 61 G 0.001 0.001 0.004 0.030 0.130 0.834 62 S 0.001 0.006 0.002 0.010 0.112 0.870 63 S 0.001 0.002 0.001 0.008 0.059 0.929 64 P 0.001 0.001 0.031 0.938 0.017 0.014 65 Q 0.001 0.001 0.031 0.947 0.017 0.005 66 M 0.001 0.001 0.030 0.960 0.009 0.001 67 W 0.001 0.001 0.006 0.985 0.006 0.003 68 L 0.001 0.001 0.004 0.987 0.007 0.002 69 N 0.001 0.001 0.003 0.983 0.010 0.003 70 L 0.001 0.001 0.003 0.975 0.014 0.008 71 Q 0.001 0.001 0.003 0.974 0.011 0.010 72 N 0.001 0.001 0.003 0.977 0.009 0.011 73 A 0.001 0.001 0.002 0.974 0.009 0.016 74 W 0.001 0.001 0.001 0.970 0.010 0.018 75 S 0.001 0.002 0.001 0.955 0.010 0.031 76 L 0.001 0.001 0.001 0.992 0.002 0.005 77 A 0.001 0.001 0.001 0.993 0.003 0.003 78 E 0.001 0.001 0.001 0.994 0.003 0.002 79 A 0.001 0.001 0.001 0.989 0.007 0.004 80 E 0.001 0.001 0.001 0.984 0.008 0.007 81 K 0.001 0.001 0.002 0.957 0.022 0.019 82 T 0.001 0.001 0.002 0.926 0.034 0.038 83 V 0.001 0.001 0.003 0.868 0.035 0.093 84 D 0.001 0.001 0.009 0.567 0.109 0.313 85 V 0.002 0.001 0.032 0.694 0.137 0.135 86 S 0.005 0.004 0.052 0.667 0.166 0.106 87 R 0.007 0.003 0.073 0.689 0.135 0.092 88 L 0.007 0.003 0.112 0.690 0.115 0.072 89 R 0.007 0.001 0.093 0.697 0.098 0.104 90 R 0.027 0.005 0.043 0.605 0.131 0.189 91 L 0.049 0.023 0.040 0.238 0.212 0.438 92 V 0.073 0.012 0.046 0.134 0.215 0.519 93 T 0.088 0.004 0.181 0.116 0.215 0.396 94 Q 0.089 0.015 0.154 0.097 0.255 0.390 95 S 0.081 0.016 0.067 0.052 0.233 0.551 96 T 0.018 0.004 0.009 0.017 0.123 0.830 97 P 0.001 0.002 0.001 0.003 0.035 0.959