# TARGET T0311 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t1c2-str2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0311.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 48.7579 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.003 0.018 0.524 0.009 0.044 0.141 0.001 0.003 0.013 0.109 0.067 0.020 0.048 2 K 0.005 0.041 0.555 0.004 0.025 0.103 0.003 0.006 0.028 0.051 0.071 0.047 0.059 3 M 0.005 0.068 0.512 0.004 0.020 0.057 0.004 0.008 0.045 0.092 0.069 0.028 0.088 4 A 0.004 0.026 0.512 0.013 0.021 0.031 0.002 0.002 0.020 0.176 0.129 0.046 0.018 5 N 0.001 0.013 0.534 0.002 0.009 0.007 0.001 0.001 0.014 0.214 0.162 0.009 0.033 6 H 0.001 0.032 0.753 0.001 0.006 0.008 0.001 0.001 0.008 0.130 0.039 0.008 0.016 7 P 0.001 0.032 0.718 0.001 0.009 0.023 0.001 0.001 0.009 0.121 0.077 0.002 0.008 8 R 0.001 0.011 0.782 0.001 0.017 0.041 0.001 0.001 0.004 0.097 0.043 0.002 0.001 9 P 0.001 0.007 0.098 0.001 0.046 0.344 0.001 0.001 0.002 0.081 0.420 0.001 0.001 10 G 0.001 0.005 0.129 0.001 0.023 0.408 0.001 0.001 0.002 0.095 0.334 0.001 0.001 11 D 0.001 0.013 0.127 0.001 0.014 0.722 0.001 0.001 0.007 0.064 0.030 0.013 0.006 12 I 0.001 0.027 0.054 0.001 0.013 0.812 0.001 0.002 0.009 0.019 0.024 0.002 0.035 13 I 0.001 0.002 0.010 0.003 0.023 0.947 0.001 0.001 0.001 0.003 0.010 0.001 0.001 14 Q 0.001 0.001 0.006 0.001 0.031 0.936 0.001 0.001 0.001 0.002 0.024 0.001 0.001 15 E 0.001 0.001 0.005 0.001 0.024 0.899 0.001 0.001 0.001 0.004 0.065 0.001 0.001 16 S 0.001 0.008 0.024 0.001 0.040 0.783 0.001 0.001 0.002 0.023 0.114 0.001 0.001 17 L 0.001 0.006 0.125 0.001 0.101 0.640 0.001 0.001 0.001 0.046 0.077 0.001 0.002 18 D 0.001 0.002 0.049 0.001 0.231 0.588 0.001 0.001 0.001 0.027 0.100 0.001 0.002 19 E 0.001 0.001 0.041 0.001 0.184 0.646 0.001 0.001 0.001 0.024 0.100 0.001 0.002 20 L 0.001 0.003 0.082 0.001 0.058 0.594 0.001 0.001 0.005 0.079 0.176 0.001 0.001 21 N 0.001 0.010 0.196 0.002 0.015 0.053 0.001 0.001 0.009 0.117 0.592 0.003 0.001 22 V 0.001 0.041 0.571 0.001 0.007 0.112 0.001 0.001 0.007 0.186 0.056 0.010 0.010 23 S 0.001 0.093 0.711 0.001 0.002 0.076 0.001 0.001 0.022 0.028 0.007 0.002 0.056 24 L 0.001 0.001 0.001 0.001 0.006 0.989 0.001 0.001 0.001 0.001 0.003 0.001 0.001 25 R 0.001 0.001 0.001 0.001 0.003 0.995 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.006 0.001 0.001 29 R 0.001 0.001 0.001 0.001 0.005 0.963 0.001 0.001 0.001 0.001 0.032 0.001 0.001 30 A 0.001 0.001 0.004 0.001 0.019 0.897 0.001 0.001 0.001 0.006 0.073 0.001 0.001 31 M 0.001 0.001 0.018 0.001 0.026 0.430 0.001 0.001 0.001 0.040 0.483 0.001 0.001 32 E 0.001 0.002 0.051 0.001 0.009 0.017 0.001 0.001 0.001 0.046 0.873 0.001 0.001 33 I 0.001 0.034 0.697 0.001 0.002 0.022 0.001 0.001 0.001 0.216 0.023 0.002 0.002 34 A 0.001 0.005 0.925 0.001 0.001 0.009 0.001 0.001 0.001 0.057 0.002 0.001 0.001 35 P 0.001 0.001 0.038 0.001 0.159 0.734 0.001 0.001 0.001 0.008 0.059 0.001 0.001 36 S 0.001 0.001 0.005 0.001 0.131 0.816 0.001 0.001 0.001 0.012 0.037 0.001 0.001 37 T 0.001 0.001 0.018 0.001 0.060 0.903 0.001 0.001 0.002 0.004 0.011 0.001 0.002 38 A 0.001 0.001 0.001 0.001 0.004 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 S 0.001 0.001 0.001 0.001 0.004 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 40 R 0.001 0.001 0.001 0.001 0.009 0.983 0.001 0.001 0.001 0.001 0.008 0.001 0.001 41 L 0.001 0.001 0.001 0.001 0.014 0.970 0.001 0.001 0.001 0.001 0.014 0.001 0.001 42 L 0.001 0.003 0.008 0.001 0.018 0.896 0.001 0.001 0.001 0.012 0.061 0.001 0.001 43 T 0.001 0.001 0.011 0.001 0.025 0.303 0.001 0.001 0.001 0.015 0.645 0.001 0.001 44 G 0.001 0.003 0.098 0.001 0.024 0.107 0.001 0.001 0.001 0.149 0.614 0.001 0.001 45 K 0.001 0.016 0.454 0.002 0.064 0.062 0.001 0.001 0.011 0.265 0.115 0.006 0.005 46 A 0.001 0.017 0.444 0.003 0.028 0.021 0.001 0.001 0.036 0.255 0.174 0.011 0.012 47 A 0.001 0.059 0.548 0.001 0.011 0.007 0.003 0.002 0.103 0.132 0.077 0.014 0.042 48 L 0.001 0.073 0.726 0.001 0.001 0.008 0.001 0.001 0.040 0.120 0.006 0.015 0.009 49 T 0.001 0.008 0.953 0.001 0.001 0.011 0.001 0.001 0.003 0.018 0.001 0.001 0.005 50 P 0.001 0.001 0.002 0.001 0.011 0.965 0.001 0.001 0.001 0.001 0.021 0.001 0.001 51 E 0.001 0.001 0.001 0.001 0.014 0.970 0.001 0.001 0.001 0.001 0.014 0.001 0.001 52 M 0.001 0.001 0.001 0.001 0.013 0.984 0.001 0.001 0.001 0.001 0.002 0.001 0.001 53 A 0.001 0.003 0.001 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.004 0.001 0.001 54 I 0.001 0.001 0.001 0.001 0.001 0.980 0.001 0.001 0.001 0.002 0.014 0.001 0.001 55 K 0.001 0.001 0.003 0.001 0.001 0.981 0.001 0.001 0.001 0.003 0.011 0.001 0.001 56 L 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 57 S 0.001 0.001 0.001 0.001 0.007 0.981 0.001 0.001 0.001 0.001 0.010 0.001 0.001 58 V 0.001 0.001 0.003 0.001 0.027 0.933 0.001 0.001 0.001 0.001 0.033 0.001 0.001 59 V 0.004 0.009 0.008 0.001 0.059 0.761 0.001 0.001 0.001 0.009 0.145 0.001 0.002 60 I 0.001 0.002 0.022 0.001 0.020 0.273 0.001 0.001 0.003 0.043 0.628 0.003 0.002 61 G 0.003 0.005 0.101 0.001 0.007 0.028 0.001 0.001 0.002 0.116 0.732 0.003 0.003 62 S 0.001 0.031 0.591 0.001 0.001 0.021 0.001 0.001 0.001 0.307 0.043 0.002 0.003 63 S 0.001 0.008 0.880 0.001 0.001 0.014 0.001 0.001 0.001 0.091 0.005 0.001 0.001 64 P 0.001 0.001 0.007 0.001 0.040 0.875 0.001 0.001 0.001 0.005 0.073 0.001 0.001 65 Q 0.001 0.001 0.004 0.001 0.066 0.876 0.001 0.001 0.001 0.005 0.048 0.001 0.001 66 M 0.001 0.001 0.004 0.001 0.091 0.889 0.001 0.001 0.001 0.002 0.013 0.001 0.001 67 W 0.001 0.003 0.002 0.001 0.010 0.975 0.001 0.001 0.001 0.002 0.008 0.001 0.001 68 L 0.001 0.001 0.001 0.001 0.005 0.963 0.001 0.001 0.001 0.001 0.031 0.001 0.001 69 N 0.001 0.001 0.001 0.001 0.007 0.950 0.001 0.001 0.001 0.002 0.041 0.001 0.001 70 L 0.001 0.001 0.006 0.001 0.006 0.973 0.001 0.001 0.001 0.001 0.013 0.001 0.001 71 Q 0.001 0.001 0.012 0.001 0.005 0.968 0.001 0.001 0.001 0.005 0.009 0.001 0.001 72 N 0.001 0.001 0.001 0.001 0.003 0.977 0.001 0.001 0.001 0.001 0.017 0.001 0.001 73 A 0.001 0.001 0.002 0.001 0.003 0.971 0.001 0.001 0.001 0.001 0.022 0.001 0.001 74 W 0.001 0.001 0.016 0.001 0.003 0.967 0.001 0.001 0.001 0.003 0.010 0.001 0.001 75 S 0.001 0.002 0.030 0.001 0.002 0.956 0.001 0.001 0.001 0.005 0.004 0.001 0.001 76 L 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 77 A 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.007 0.001 0.001 78 E 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.007 0.001 0.001 79 A 0.001 0.001 0.003 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.005 0.001 0.001 80 E 0.001 0.001 0.003 0.001 0.004 0.982 0.001 0.001 0.001 0.001 0.008 0.001 0.001 81 K 0.001 0.001 0.004 0.001 0.006 0.966 0.001 0.001 0.001 0.002 0.019 0.001 0.001 82 T 0.001 0.001 0.025 0.001 0.006 0.907 0.001 0.001 0.001 0.007 0.053 0.001 0.001 83 V 0.001 0.002 0.094 0.001 0.009 0.662 0.001 0.001 0.001 0.048 0.183 0.001 0.001 84 D 0.001 0.004 0.465 0.001 0.007 0.374 0.001 0.001 0.001 0.047 0.100 0.001 0.001 85 V 0.001 0.001 0.056 0.001 0.024 0.868 0.001 0.001 0.001 0.013 0.037 0.001 0.001 86 S 0.001 0.002 0.047 0.002 0.031 0.873 0.001 0.001 0.001 0.023 0.016 0.004 0.001 87 R 0.001 0.001 0.026 0.001 0.034 0.864 0.001 0.003 0.024 0.005 0.016 0.003 0.022 88 L 0.001 0.006 0.018 0.013 0.016 0.899 0.001 0.006 0.005 0.008 0.018 0.003 0.004 89 R 0.001 0.003 0.027 0.007 0.017 0.836 0.001 0.022 0.016 0.009 0.034 0.012 0.016 90 R 0.004 0.003 0.031 0.003 0.012 0.841 0.001 0.010 0.009 0.018 0.036 0.008 0.024 91 L 0.006 0.010 0.196 0.040 0.016 0.520 0.002 0.007 0.020 0.073 0.055 0.020 0.036 92 V 0.004 0.018 0.359 0.012 0.017 0.229 0.002 0.008 0.052 0.068 0.074 0.106 0.050 93 T 0.004 0.021 0.253 0.010 0.029 0.160 0.003 0.008 0.026 0.075 0.156 0.024 0.230 94 Q 0.010 0.016 0.287 0.023 0.030 0.104 0.005 0.005 0.016 0.153 0.219 0.108 0.024 95 S 0.008 0.018 0.452 0.002 0.016 0.024 0.003 0.001 0.013 0.183 0.146 0.015 0.119 96 T 0.001 0.037 0.635 0.001 0.006 0.011 0.001 0.001 0.008 0.219 0.027 0.033 0.021 97 P 0.001 0.009 0.799 0.001 0.016 0.015 0.001 0.001 0.002 0.099 0.049 0.001 0.008