# TARGET T0311 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0311.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 56.9073 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.003 0.004 0.061 0.066 0.857 2 K 0.056 0.016 0.013 0.115 0.107 0.694 3 M 0.047 0.016 0.024 0.099 0.170 0.643 4 A 0.041 0.032 0.037 0.069 0.255 0.566 5 N 0.024 0.010 0.023 0.038 0.320 0.585 6 H 0.012 0.008 0.006 0.011 0.237 0.727 7 P 0.009 0.021 0.004 0.021 0.184 0.760 8 R 0.014 0.026 0.005 0.055 0.277 0.622 9 P 0.006 0.003 0.012 0.709 0.157 0.113 10 G 0.009 0.005 0.017 0.771 0.119 0.079 11 D 0.026 0.006 0.015 0.857 0.063 0.033 12 I 0.029 0.008 0.019 0.874 0.038 0.032 13 I 0.012 0.005 0.013 0.931 0.018 0.020 14 Q 0.005 0.001 0.031 0.929 0.017 0.016 15 E 0.002 0.001 0.035 0.918 0.030 0.014 16 S 0.002 0.001 0.031 0.925 0.029 0.013 17 L 0.002 0.002 0.039 0.895 0.044 0.019 18 D 0.002 0.001 0.097 0.838 0.041 0.022 19 E 0.001 0.001 0.097 0.822 0.052 0.027 20 L 0.001 0.001 0.058 0.864 0.027 0.050 21 N 0.001 0.001 0.001 0.004 0.037 0.956 22 V 0.016 0.008 0.001 0.004 0.063 0.908 23 S 0.020 0.014 0.001 0.002 0.027 0.937 24 L 0.002 0.001 0.016 0.955 0.011 0.016 25 R 0.001 0.001 0.014 0.968 0.010 0.007 26 E 0.001 0.001 0.010 0.976 0.011 0.002 27 F 0.001 0.001 0.005 0.990 0.003 0.001 28 A 0.001 0.001 0.006 0.990 0.003 0.001 29 R 0.001 0.001 0.016 0.973 0.006 0.004 30 A 0.001 0.001 0.023 0.921 0.018 0.038 31 M 0.003 0.008 0.035 0.818 0.039 0.096 32 E 0.001 0.002 0.002 0.006 0.093 0.896 33 I 0.006 0.014 0.002 0.011 0.106 0.862 34 A 0.004 0.003 0.001 0.010 0.078 0.904 35 P 0.001 0.001 0.025 0.947 0.017 0.011 36 S 0.001 0.001 0.029 0.953 0.014 0.004 37 T 0.001 0.001 0.034 0.951 0.011 0.002 38 A 0.003 0.001 0.006 0.981 0.007 0.003 39 S 0.003 0.001 0.008 0.974 0.009 0.005 40 R 0.005 0.001 0.010 0.963 0.016 0.006 41 L 0.006 0.001 0.007 0.960 0.021 0.006 42 L 0.005 0.004 0.006 0.936 0.044 0.005 43 T 0.004 0.001 0.014 0.780 0.167 0.035 44 G 0.006 0.002 0.028 0.351 0.374 0.238 45 K 0.028 0.033 0.065 0.231 0.339 0.304 46 A 0.094 0.014 0.066 0.106 0.396 0.323 47 A 0.117 0.019 0.037 0.049 0.322 0.456 48 L 0.073 0.048 0.009 0.049 0.184 0.637 49 T 0.023 0.010 0.001 0.042 0.078 0.846 50 P 0.001 0.001 0.006 0.986 0.004 0.003 51 E 0.001 0.001 0.007 0.989 0.003 0.001 52 M 0.001 0.001 0.008 0.989 0.002 0.001 53 A 0.001 0.001 0.004 0.991 0.002 0.001 54 I 0.001 0.001 0.003 0.993 0.002 0.001 55 K 0.001 0.001 0.002 0.991 0.004 0.002 56 L 0.001 0.001 0.003 0.987 0.006 0.003 57 S 0.002 0.001 0.011 0.973 0.012 0.002 58 V 0.001 0.001 0.016 0.967 0.014 0.002 59 V 0.002 0.001 0.013 0.957 0.022 0.006 60 I 0.001 0.001 0.010 0.906 0.028 0.054 61 G 0.001 0.001 0.002 0.030 0.082 0.884 62 S 0.004 0.012 0.003 0.034 0.126 0.821 63 S 0.005 0.005 0.001 0.031 0.081 0.877 64 P 0.001 0.001 0.006 0.975 0.010 0.010 65 Q 0.001 0.001 0.007 0.985 0.006 0.002 66 M 0.002 0.001 0.012 0.974 0.010 0.002 67 W 0.006 0.001 0.005 0.972 0.010 0.006 68 L 0.007 0.001 0.006 0.967 0.012 0.006 69 N 0.005 0.001 0.008 0.949 0.020 0.016 70 L 0.003 0.001 0.007 0.939 0.022 0.028 71 Q 0.005 0.002 0.014 0.921 0.036 0.022 72 N 0.003 0.001 0.019 0.874 0.055 0.048 73 A 0.003 0.001 0.020 0.898 0.038 0.042 74 W 0.006 0.001 0.018 0.865 0.051 0.059 75 S 0.010 0.003 0.011 0.877 0.044 0.055 76 L 0.004 0.001 0.008 0.957 0.017 0.014 77 A 0.003 0.001 0.011 0.966 0.013 0.007 78 E 0.005 0.001 0.017 0.938 0.028 0.011 79 A 0.006 0.001 0.013 0.924 0.033 0.023 80 E 0.006 0.002 0.013 0.916 0.030 0.033 81 K 0.006 0.002 0.013 0.834 0.051 0.095 82 T 0.005 0.002 0.010 0.640 0.083 0.259 83 V 0.008 0.003 0.012 0.563 0.116 0.298 84 D 0.017 0.006 0.015 0.270 0.207 0.484 85 V 0.019 0.002 0.044 0.476 0.210 0.249 86 S 0.045 0.006 0.060 0.520 0.163 0.207 87 R 0.064 0.004 0.077 0.592 0.152 0.111 88 L 0.097 0.004 0.058 0.591 0.114 0.137 89 R 0.144 0.005 0.050 0.576 0.094 0.130 90 R 0.258 0.009 0.028 0.489 0.071 0.144 91 L 0.197 0.009 0.019 0.541 0.054 0.179 92 V 0.172 0.010 0.019 0.459 0.072 0.268 93 T 0.125 0.010 0.038 0.314 0.127 0.386 94 Q 0.079 0.012 0.031 0.192 0.145 0.542 95 S 0.033 0.009 0.022 0.098 0.126 0.711 96 T 0.004 0.002 0.001 0.002 0.041 0.951 97 P 0.001 0.001 0.001 0.001 0.014 0.984