# TARGET T0311 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0311.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 56.9073 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.005 0.001 0.001 0.001 0.001 0.001 0.992 2 K 0.095 0.039 0.014 0.031 0.005 0.023 0.793 3 M 0.099 0.022 0.050 0.052 0.110 0.071 0.596 4 A 0.096 0.017 0.047 0.036 0.150 0.146 0.509 5 N 0.076 0.016 0.020 0.019 0.210 0.092 0.567 6 H 0.035 0.011 0.003 0.002 0.119 0.024 0.806 7 P 0.023 0.033 0.002 0.005 0.181 0.027 0.730 8 R 0.015 0.037 0.001 0.006 0.120 0.008 0.814 9 P 0.002 0.002 0.023 0.826 0.017 0.088 0.041 10 G 0.002 0.001 0.023 0.914 0.009 0.040 0.012 11 D 0.005 0.001 0.016 0.961 0.006 0.005 0.007 12 I 0.013 0.005 0.010 0.952 0.003 0.008 0.008 13 I 0.013 0.002 0.015 0.941 0.003 0.017 0.009 14 Q 0.007 0.001 0.025 0.930 0.005 0.023 0.009 15 E 0.005 0.002 0.022 0.891 0.015 0.037 0.028 16 S 0.005 0.002 0.017 0.885 0.011 0.045 0.034 17 L 0.005 0.003 0.019 0.923 0.015 0.014 0.020 18 D 0.002 0.001 0.044 0.894 0.007 0.046 0.007 19 E 0.001 0.001 0.051 0.772 0.019 0.147 0.009 20 L 0.002 0.002 0.030 0.320 0.027 0.606 0.014 21 N 0.003 0.004 0.004 0.035 0.057 0.753 0.143 22 V 0.012 0.010 0.001 0.008 0.050 0.005 0.914 23 S 0.060 0.059 0.002 0.033 0.020 0.003 0.823 24 L 0.001 0.001 0.013 0.976 0.001 0.004 0.005 25 R 0.001 0.001 0.015 0.978 0.001 0.004 0.002 26 E 0.001 0.001 0.006 0.989 0.001 0.003 0.002 27 F 0.001 0.001 0.002 0.994 0.001 0.002 0.001 28 A 0.001 0.001 0.003 0.992 0.001 0.003 0.001 29 R 0.001 0.001 0.003 0.985 0.001 0.010 0.001 30 A 0.001 0.001 0.008 0.922 0.004 0.062 0.003 31 M 0.003 0.003 0.009 0.502 0.035 0.424 0.025 32 E 0.002 0.003 0.005 0.036 0.052 0.749 0.154 33 I 0.007 0.017 0.001 0.003 0.156 0.006 0.810 34 A 0.010 0.011 0.001 0.004 0.018 0.002 0.954 35 P 0.001 0.001 0.119 0.842 0.004 0.027 0.007 36 S 0.001 0.001 0.093 0.880 0.003 0.020 0.003 37 T 0.001 0.001 0.051 0.924 0.001 0.016 0.006 38 A 0.001 0.001 0.003 0.988 0.001 0.005 0.002 39 S 0.001 0.001 0.003 0.990 0.001 0.005 0.001 40 R 0.001 0.001 0.004 0.988 0.001 0.006 0.001 41 L 0.001 0.001 0.003 0.986 0.001 0.007 0.002 42 L 0.003 0.003 0.007 0.938 0.005 0.037 0.007 43 T 0.001 0.001 0.008 0.525 0.013 0.445 0.008 44 G 0.002 0.001 0.011 0.245 0.041 0.632 0.068 45 K 0.015 0.011 0.047 0.189 0.157 0.124 0.456 46 A 0.048 0.017 0.065 0.108 0.182 0.147 0.432 47 A 0.050 0.015 0.029 0.044 0.117 0.097 0.647 48 L 0.040 0.068 0.003 0.020 0.081 0.015 0.773 49 T 0.011 0.018 0.001 0.010 0.029 0.002 0.929 50 P 0.001 0.001 0.010 0.980 0.001 0.008 0.001 51 E 0.001 0.001 0.005 0.991 0.001 0.003 0.001 52 M 0.001 0.001 0.006 0.992 0.001 0.002 0.001 53 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 54 I 0.001 0.001 0.001 0.992 0.001 0.006 0.001 55 K 0.001 0.001 0.001 0.983 0.001 0.015 0.001 56 L 0.001 0.001 0.001 0.983 0.001 0.013 0.003 57 S 0.003 0.001 0.002 0.978 0.005 0.008 0.004 58 V 0.003 0.001 0.004 0.979 0.001 0.011 0.002 59 V 0.002 0.001 0.006 0.931 0.004 0.052 0.003 60 I 0.003 0.002 0.009 0.607 0.015 0.350 0.014 61 G 0.007 0.003 0.006 0.080 0.112 0.608 0.185 62 S 0.010 0.011 0.002 0.015 0.298 0.025 0.639 63 S 0.007 0.010 0.001 0.023 0.087 0.007 0.864 64 P 0.001 0.001 0.010 0.954 0.004 0.026 0.005 65 Q 0.001 0.001 0.015 0.961 0.003 0.019 0.002 66 M 0.001 0.001 0.019 0.966 0.002 0.007 0.005 67 W 0.002 0.001 0.005 0.978 0.002 0.008 0.004 68 L 0.002 0.001 0.007 0.950 0.004 0.032 0.003 69 N 0.002 0.001 0.010 0.891 0.007 0.079 0.009 70 L 0.005 0.002 0.022 0.859 0.015 0.060 0.036 71 Q 0.005 0.003 0.045 0.857 0.020 0.043 0.026 72 N 0.004 0.001 0.047 0.772 0.020 0.130 0.026 73 A 0.002 0.001 0.029 0.820 0.023 0.108 0.016 74 W 0.011 0.004 0.011 0.759 0.076 0.066 0.074 75 S 0.020 0.009 0.012 0.500 0.042 0.077 0.339 76 L 0.007 0.001 0.014 0.906 0.009 0.030 0.033 77 A 0.008 0.001 0.010 0.946 0.007 0.016 0.013 78 E 0.015 0.001 0.012 0.942 0.003 0.011 0.015 79 A 0.016 0.001 0.011 0.939 0.004 0.015 0.014 80 E 0.021 0.002 0.011 0.919 0.009 0.020 0.019 81 K 0.013 0.001 0.009 0.894 0.011 0.057 0.017 82 T 0.006 0.001 0.007 0.807 0.026 0.094 0.060 83 V 0.009 0.007 0.005 0.636 0.105 0.089 0.149 84 D 0.013 0.004 0.009 0.357 0.087 0.090 0.440 85 V 0.009 0.002 0.040 0.624 0.061 0.125 0.139 86 S 0.015 0.002 0.074 0.616 0.047 0.125 0.121 87 R 0.043 0.009 0.106 0.562 0.051 0.090 0.139 88 L 0.099 0.010 0.074 0.447 0.051 0.095 0.225 89 R 0.224 0.009 0.055 0.329 0.058 0.076 0.248 90 R 0.430 0.016 0.030 0.257 0.035 0.043 0.189 91 L 0.479 0.018 0.017 0.193 0.039 0.030 0.224 92 V 0.425 0.016 0.018 0.164 0.035 0.048 0.294 93 T 0.331 0.013 0.027 0.148 0.075 0.074 0.331 94 Q 0.210 0.012 0.032 0.095 0.189 0.100 0.362 95 S 0.112 0.017 0.026 0.061 0.210 0.132 0.443 96 T 0.031 0.009 0.006 0.013 0.065 0.021 0.855 97 P 0.005 0.001 0.002 0.001 0.006 0.003 0.982