# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1utxA 66 6.12e-06 a.35.1.3 108034 2b5aA 77 4.91e-05 1lmb3 92 7.58e-05 1lmb3 2a6cA 83 1.56e-04 1y7yA 74 1.80e-04 1hlvA 131 1.47e-03 a.4.1.7,a.4.1.7 65854,65855 1y9qA 192 6.81e-03 1r69 69 9.95e-03 1r69 a.35.1.2 17028 1adr 76 1.36e-02 1r69 a.35.1.2 17042 1b0nA 111 1.59e-02 1b0nA a.34.1.1,a.35.1.3 17001,17064 1dwkA 156 2.69e-02 1dw9A a.35.1.4,d.72.1.1 17075,39606 1umqA 81 5.27e-02 a.4.1.12 99625 1orc 71 6.07e-02 1orc a.35.1.2 17054 2bnmA 198 6.97e-02 2cu3A 64 1.18e-01 2cro 71 2.15e-01 1r69 a.35.1.2 17038 2auwA 170 2.15e-01 1r1tA 122 2.23e-01 a.4.5.5 104769 1hw1A 239 2.77e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2tct 207 3.19e-01 2tct a.4.1.9,a.121.1.1 16063,19240 1qbjA 81 4.19e-01 1qbjA a.4.5.19 16155 1s6lA 212 5.33e-01 1xsvA 113 5.73e-01 1u8bA 133 5.75e-01 1vaxA 287 6.32e-01 1z0xA 220 6.46e-01 1yseA 141 7.22e-01 1mixA 206 1.12e+00 a.11.2.1,b.55.1.5 79166,79167 2cg4A 152 1.43e+00 1ku3A 73 1.52e+00 a.4.13.2 73000 1j75A 67 1.62e+00 a.4.5.19 62673 1vddA 228 1.62e+00 e.49.1.1 108519 1g55A 343 2.02e+00 1g55A c.66.1.26 34247 1qb2A 109 2.06e+00 1qb2A a.36.1.1 17125 1res 43 2.35e+00 1ret a.4.1.2 16023 1sfxA 109 2.39e+00 a.4.5.50 105505 1rzsA 61 2.39e+00 a.35.1.2 105139 1j34B 123 2.44e+00 d.169.1.1 84049 2fbhA 146 2.57e+00 1jftA 340 2.76e+00 a.35.1.5,c.93.1.1 66652,66653 2fm8A 135 2.95e+00 1u4bA 580 3.18e+00 c.55.3.5,e.8.1.1 107664,107665 1cfr 285 3.34e+00 1cfr c.52.1.7 33312 2bt2A 161 3.37e+00 1u3eM 174 3.39e+00 d.4.1.3,d.285.1.1 107640,107641 1khcA 147 3.50e+00 b.34.9.2 68608 1zu1A 127 3.65e+00 1e0eA 55 3.66e+00 1wjcA a.4.10.1 59147 1jpaA 312 3.70e+00 d.144.1.7 67011 1bl0A 129 3.89e+00 1d5yA a.4.1.8,a.4.1.8 16053,16054 1nf3A 195 4.20e+00 c.37.1.8 85594 1t56A 216 4.30e+00 a.4.1.9,a.121.1.1 106428,106429 1kyqA 274 4.53e+00 c.2.1.11,e.37.1.1 73281,73282 1ngr 85 4.63e+00 1ngr a.77.1.2 18422 1z67A 135 4.69e+00 1pmzA 86 5.15e+00 a.39.1.10 104195 1bc5A 269 5.46e+00 1af7 a.58.1.1,c.66.1.8 17929,34204 1af7 274 5.69e+00 1af7 a.58.1.1,c.66.1.8 17928,34203 1yw3A 208 5.86e+00 1pufB 73 5.99e+00 a.4.1.1 95132 2fx0A 201 7.01e+00 1rmwA 212 7.04e+00 1fiqB 350 7.35e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1w2yA 229 7.38e+00 a.204.1.1 109140 2ffeA 311 7.45e+00 2g7uA 257 7.50e+00 2b82A 211 7.57e+00 2cfxA 144 7.73e+00 1t33A 224 8.02e+00 a.4.1.9,a.121.1.1 106295,106296 1kblA 873 8.07e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1neq 74 8.49e+00 1neq a.35.1.2 17063 1r7lA 110 9.12e+00 d.277.1.1 104837 1gqzA 274 9.47e+00 d.21.1.1,d.21.1.1 83311,83312 1r89A 437 9.69e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1myt 146 1.01e+01 1a6m a.1.1.2 15207 1jbwA 428 1.04e+01 c.59.1.2,c.72.2.2 62860,62861 1f60A 458 1.07e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2g3bA 208 1.08e+01 1t2dA 322 1.11e+01 c.2.1.5,d.162.1.1 99084,99085 1x2iA 75 1.14e+01 1zk8A 183 1.18e+01 1uw4A 91 1.20e+01 d.58.7.4 100071 2g8lA 299 1.23e+01 1qusA 322 1.25e+01 1ltm d.2.1.6 36991 2ao9A 155 1.26e+01 2csbA 519 1.37e+01 2a2cA 478 1.39e+01 1n7sC 79 1.58e+01 h.1.15.1 80273 1oohA 126 1.58e+01 a.39.2.1 93383 1wqaA 455 1.64e+01 1x1nA 524 1.70e+01 1mbmA 198 1.76e+01 b.47.1.3 78916 1hx1B 114 1.80e+01 1hx1B a.7.7.1 61350 1qzzA 374 1.87e+01 a.4.5.29,c.66.1.12 96719,96720 2gkeA 274 1.94e+01 2g5dA 422 1.94e+01 2awiA 317 1.99e+01 1x2mA 64 2.06e+01 1bia 321 2.06e+01 1bia a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1q77A 138 2.09e+01 c.26.2.4 96023 1sluA 142 2.11e+01 1sluA b.16.1.1 23685 1ucsA 64 2.14e+01 b.85.1.1 88466 2carA 196 2.14e+01 1nxhA 126 2.15e+01 a.200.1.1 92300 1tn3 137 2.26e+01 1htn d.169.1.1 42423 1o6yA 299 2.26e+01 d.144.1.7 81106 1mqvA 125 2.30e+01 a.24.3.2 79415 1y6uA 70 2.32e+01 1b4pA 217 2.33e+01 a.45.1.1,c.47.1.5 83158,83159 1ulyA 192 2.34e+01 1gvnB 287 2.40e+01 c.37.1.21 76354 1r5rA 119 2.42e+01 a.39.2.1 97104 1fg7A 356 2.44e+01 1gewA c.67.1.1 59819 1jyrA 96 2.45e+01 d.93.1.1 71969 2g7iA 125 2.45e+01 1in6A 334 2.45e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ez3A 127 2.46e+01 1dn1B a.47.2.1 17768 1g2hA 61 2.51e+01 1g2hA a.4.1.12 60224 1n3kA 130 2.61e+01 a.77.1.4 79965 1xewY 172 2.62e+01 1j9iA 68 2.65e+01 a.6.1.5 71619 1wt9B 123 2.69e+01 2c3vA 102 2.72e+01 1no1A 126 2.74e+01 a.179.1.1 85913 1v74B 87 2.75e+01 a.24.20.1 100443 1d5yA 292 2.78e+01 1d5yA a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 1pht 85 2.79e+01 1ckaA b.34.2.1 24483 1fmjA 351 2.81e+01 c.37.1.5 59879 1tfe 145 2.85e+01 1tfe d.43.1.1 38680 2f0aA 98 2.98e+01 1zxkA 98 3.01e+01 1qsmA 152 3.03e+01 1qsmA d.108.1.1 40808 1s7mA 174 3.20e+01 b.144.1.1 98649 1vi9A 299 3.27e+01 c.72.1.5 100750 1in4A 334 3.28e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1aisB 200 3.35e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1p1mA 406 3.35e+01 b.92.1.4,c.1.9.9 87696,87697 2bl0C 142 3.45e+01 1gegA 256 3.48e+01 1ybvA c.2.1.2 29888 1pk6C 129 3.50e+01 b.22.1.1 94803 1o4tA 133 3.50e+01 b.82.1.9 86622 1el6A 219 3.59e+01 1el6B d.182.1.1 42606 1mv8A 436 3.64e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2g8yA 385 3.69e+01 1ci4A 89 3.75e+01 1qckA a.60.5.1 17970 2culA 232 3.80e+01 1uuhA 159 3.84e+01 d.169.1.4 100008 2dg5A 366 3.87e+01 1te2A 226 3.95e+01 c.108.1.6 106792 1hu3A 260 3.96e+01 1hu3A a.118.1.14 19137 1rifA 282 4.02e+01 c.37.1.23 97507 1vpkA 378 4.03e+01 1jkoC 52 4.11e+01 a.4.1.2 66809 1z23A 163 4.12e+01 2g9iA 249 4.16e+01 1mkmA 249 4.27e+01 a.4.5.33,d.110.2.2 79242,79243 2ftuA 118 4.32e+01 1wovA 250 4.39e+01 1j5sA 463 4.41e+01 c.1.9.8 71580 1vhxA 150 4.48e+01 c.55.3.8 100712 1q8yA 373 4.50e+01 d.144.1.7 96234 1id1A 153 4.56e+01 1id1A c.2.1.9 62286 1rk6A 496 4.66e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ef1C 90 4.68e+01 1ef1C a.137.5.1 19642 1ecfA 504 4.69e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1drw 273 4.76e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1tujA 123 4.77e+01 2ctoA 93 4.85e+01 1q08A 99 4.86e+01 a.6.1.3 95497 1bby 69 4.87e+01 2bby a.4.5.15 16149 2d13A 227 4.94e+01 1w7jA 795 4.96e+01 1m3sA 186 4.97e+01 c.80.1.3 78573 1z6oA 212 5.04e+01 1gd0A 122 5.18e+01 1dptA d.80.1.3 39834 1ykhA 108 5.19e+01 1oe8A 211 5.28e+01 a.45.1.1,c.47.1.5 86905,86906 1sk7A 198 5.30e+01 a.132.1.2 105671 1dxjA 242 5.53e+01 1cnsA d.2.1.1 36244 1yw5A 177 5.56e+01 1nw1A 429 5.60e+01 d.144.1.8 86286 1qjpA 171 5.61e+01 1bxwA f.4.1.1 43742 1v7pB 128 5.68e+01 d.169.1.1 108407 1kn1A 160 5.76e+01 a.1.1.3 77455 2rspA 124 5.78e+01 2rspB b.50.1.1 26771 2f4iA 197 5.79e+01 2audA 257 5.83e+01 2a5yB 549 5.84e+01 1lj9A 144 6.01e+01 a.4.5.28 78035 1gmlA 178 6.01e+01 c.8.5.2 70273 1o6aA 96 6.07e+01 b.139.1.1 92562 1k78A 149 6.08e+01 a.4.1.5,a.4.1.5 68255,68256 1z8sA 146 6.10e+01 1wwpA 119 6.11e+01 1xqoA 256 6.15e+01 1wriA 93 6.15e+01 1tuaA 191 6.32e+01 d.51.1.1,d.51.1.1 107321,107322 3kvt 115 6.33e+01 1t1dA d.42.1.2 38642 1fipA 98 6.42e+01 1fipA a.4.1.12 18980 1m45A 148 6.51e+01 a.39.1.5 78598 1om4A 422 6.53e+01 d.174.1.1 87067 1azo 232 6.53e+01 1azo c.52.1.14 33329 1ekeA 230 6.56e+01 1ekeA c.55.3.1 33572 1gnyA 153 6.56e+01 b.18.1.11 65404 1ypqA 135 6.56e+01 1vi0A 206 6.58e+01 a.4.1.9,a.121.1.1 100720,100721 1z8yJ 36 6.65e+01 1zvnA 99 6.68e+01 1fvuB 125 6.69e+01 1ixxB d.169.1.1 42346 1rvgA 305 6.72e+01 c.1.10.2 97920 1owfA 99 6.77e+01 a.55.1.1 87487 1uhaA 82 6.80e+01 g.3.1.1,g.3.1.1 99395,99396 1v8dA 235 6.85e+01 c.140.1.1 108425 1g6gA 127 6.90e+01 1g6gA b.26.1.2 23916 1gdvA 85 6.94e+01 1ctj a.3.1.1 60458 1ew4A 106 6.96e+01 1ew4A d.82.2.1 40023 1chkA 238 6.98e+01 1chkA d.2.1.7 36999 1a8o 70 6.98e+01 1a8o a.28.3.1 16953 1irdB 146 7.11e+01 a.1.1.2 66287 1c6vX 81 7.11e+01 1ihvA b.34.7.1 24641 1s35A 214 7.21e+01 a.7.1.1,a.7.1.1 98420,98421 1hw5A 210 7.24e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1x3mA 415 7.32e+01 2fq4A 192 7.39e+01 1v0aA 178 7.50e+01 1s0pA 176 7.69e+01 a.192.1.1 98300 1xaoA 121 7.70e+01 1zljA 78 7.72e+01 2az4A 429 7.82e+01 1bu6O 501 8.02e+01 1glcG c.55.1.4,c.55.1.4 33499,33500 2gauA 232 8.18e+01 1s4zC 30 8.30e+01 1qmvA 197 8.32e+01 1qq2A c.47.1.10 33066 1tc3C 51 8.33e+01 1tc3C a.4.1.2 16025 1h7zA 194 8.37e+01 1qhvA b.21.1.1 60733 1zx4A 192 8.37e+01 1u14A 172 8.38e+01 c.51.4.3 107579 1l5oA 356 8.46e+01 c.39.1.1 77711 1t95A 240 8.48e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1uxjA 309 8.51e+01 c.2.1.5,d.162.1.1 108112,108113 2ap3A 199 8.58e+01 1s1hN 36 8.68e+01 i.1.1.1 105166 1n8vA 112 8.70e+01 a.118.21.1 85457 2fzsA 193 8.70e+01 1ro5A 201 8.74e+01 d.108.1.3 105023 1wmuB 146 8.80e+01 a.1.1.2 109417 1i9gA 280 8.80e+01 c.66.1.13 62090 1ofcX 304 8.87e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 451c 82 8.90e+01 451c a.3.1.1 15904