# TARGET T0311 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0311.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.1882 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.021 0.007 0.004 0.011 0.083 0.875 2 K 0.070 0.017 0.010 0.032 0.113 0.757 3 M 0.059 0.037 0.018 0.030 0.123 0.733 4 A 0.049 0.067 0.023 0.027 0.185 0.649 5 N 0.033 0.019 0.007 0.007 0.202 0.733 6 H 0.015 0.007 0.002 0.002 0.127 0.846 7 P 0.019 0.049 0.004 0.005 0.152 0.771 8 R 0.017 0.039 0.010 0.017 0.402 0.514 9 P 0.013 0.015 0.032 0.232 0.440 0.267 10 G 0.010 0.008 0.062 0.438 0.319 0.163 11 D 0.028 0.023 0.060 0.639 0.181 0.068 12 I 0.021 0.016 0.063 0.744 0.090 0.066 13 I 0.015 0.013 0.050 0.817 0.057 0.048 14 Q 0.010 0.002 0.086 0.806 0.061 0.035 15 E 0.006 0.001 0.064 0.827 0.070 0.031 16 S 0.002 0.002 0.048 0.873 0.053 0.022 17 L 0.003 0.005 0.050 0.740 0.135 0.067 18 D 0.002 0.001 0.070 0.661 0.150 0.116 19 E 0.003 0.003 0.244 0.407 0.264 0.079 20 L 0.005 0.003 0.229 0.328 0.306 0.129 21 N 0.007 0.003 0.044 0.024 0.315 0.606 22 V 0.021 0.025 0.005 0.015 0.171 0.763 23 S 0.019 0.014 0.001 0.019 0.031 0.915 24 L 0.001 0.001 0.017 0.974 0.003 0.005 25 R 0.001 0.001 0.014 0.982 0.002 0.001 26 E 0.001 0.001 0.009 0.987 0.002 0.001 27 F 0.001 0.001 0.003 0.994 0.001 0.001 28 A 0.001 0.001 0.005 0.991 0.003 0.001 29 R 0.001 0.001 0.011 0.975 0.007 0.006 30 A 0.001 0.001 0.013 0.952 0.013 0.020 31 M 0.001 0.003 0.020 0.862 0.033 0.082 32 E 0.001 0.002 0.003 0.010 0.083 0.901 33 I 0.002 0.007 0.001 0.007 0.105 0.878 34 A 0.001 0.002 0.001 0.003 0.052 0.940 35 P 0.001 0.001 0.023 0.949 0.013 0.014 36 S 0.001 0.001 0.020 0.971 0.006 0.002 37 T 0.001 0.001 0.014 0.981 0.003 0.001 38 A 0.001 0.001 0.002 0.994 0.002 0.001 39 S 0.002 0.001 0.004 0.989 0.004 0.001 40 R 0.004 0.001 0.004 0.980 0.009 0.002 41 L 0.005 0.001 0.003 0.976 0.013 0.002 42 L 0.005 0.001 0.005 0.941 0.043 0.005 43 T 0.003 0.001 0.010 0.835 0.124 0.027 44 G 0.009 0.006 0.024 0.277 0.362 0.323 45 K 0.042 0.046 0.050 0.137 0.335 0.391 46 A 0.150 0.027 0.088 0.121 0.325 0.289 47 A 0.196 0.040 0.069 0.074 0.319 0.301 48 L 0.123 0.058 0.009 0.037 0.245 0.527 49 T 0.031 0.007 0.002 0.034 0.121 0.805 50 P 0.001 0.001 0.007 0.986 0.004 0.002 51 E 0.001 0.001 0.006 0.992 0.001 0.001 52 M 0.001 0.001 0.007 0.992 0.001 0.001 53 A 0.001 0.001 0.003 0.994 0.001 0.001 54 I 0.001 0.001 0.001 0.997 0.001 0.001 55 K 0.001 0.001 0.001 0.996 0.001 0.001 56 L 0.001 0.001 0.002 0.994 0.003 0.001 57 S 0.001 0.001 0.005 0.989 0.004 0.001 58 V 0.001 0.001 0.009 0.982 0.006 0.001 59 V 0.001 0.001 0.010 0.968 0.016 0.005 60 I 0.001 0.001 0.009 0.899 0.036 0.054 61 G 0.001 0.003 0.007 0.165 0.142 0.682 62 S 0.003 0.011 0.004 0.084 0.193 0.704 63 S 0.006 0.007 0.001 0.051 0.092 0.843 64 P 0.001 0.001 0.012 0.946 0.022 0.019 65 Q 0.004 0.001 0.023 0.937 0.026 0.009 66 M 0.009 0.001 0.038 0.922 0.024 0.007 67 W 0.020 0.002 0.024 0.915 0.025 0.014 68 L 0.023 0.002 0.031 0.888 0.034 0.021 69 N 0.025 0.002 0.028 0.820 0.062 0.062 70 L 0.016 0.004 0.021 0.829 0.060 0.069 71 Q 0.016 0.009 0.040 0.729 0.098 0.107 72 N 0.019 0.006 0.099 0.551 0.191 0.132 73 A 0.012 0.003 0.170 0.556 0.162 0.096 74 W 0.020 0.009 0.058 0.534 0.155 0.223 75 S 0.014 0.007 0.019 0.554 0.086 0.321 76 L 0.001 0.001 0.005 0.972 0.008 0.014 77 A 0.002 0.001 0.007 0.978 0.008 0.005 78 E 0.003 0.001 0.008 0.972 0.012 0.004 79 A 0.003 0.001 0.009 0.964 0.016 0.007 80 E 0.003 0.001 0.010 0.936 0.025 0.025 81 K 0.004 0.001 0.011 0.814 0.052 0.118 82 T 0.006 0.003 0.007 0.601 0.109 0.274 83 V 0.005 0.003 0.006 0.659 0.091 0.236 84 D 0.014 0.004 0.007 0.281 0.193 0.500 85 V 0.020 0.003 0.024 0.659 0.139 0.156 86 S 0.062 0.004 0.027 0.700 0.092 0.115 87 R 0.090 0.004 0.031 0.723 0.079 0.073 88 L 0.147 0.004 0.025 0.658 0.065 0.101 89 R 0.181 0.004 0.022 0.645 0.051 0.097 90 R 0.221 0.005 0.018 0.562 0.051 0.143 91 L 0.216 0.010 0.014 0.499 0.048 0.213 92 V 0.177 0.013 0.013 0.483 0.052 0.262 93 T 0.150 0.013 0.027 0.311 0.108 0.391 94 Q 0.126 0.018 0.019 0.118 0.130 0.588 95 S 0.051 0.016 0.011 0.059 0.116 0.747 96 T 0.011 0.006 0.001 0.006 0.055 0.921 97 P 0.003 0.001 0.001 0.001 0.021 0.974