# TARGET T0311 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0311.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 61.1882 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.006 0.001 0.001 0.001 0.001 0.001 0.991 2 K 0.098 0.039 0.013 0.030 0.005 0.023 0.792 3 M 0.105 0.022 0.050 0.051 0.111 0.072 0.589 4 A 0.098 0.017 0.046 0.034 0.152 0.145 0.507 5 N 0.079 0.016 0.020 0.019 0.207 0.094 0.565 6 H 0.036 0.011 0.003 0.002 0.117 0.024 0.808 7 P 0.024 0.034 0.002 0.005 0.180 0.027 0.729 8 R 0.015 0.037 0.001 0.006 0.120 0.008 0.813 9 P 0.002 0.002 0.023 0.828 0.017 0.087 0.040 10 G 0.002 0.001 0.024 0.916 0.008 0.039 0.011 11 D 0.005 0.001 0.016 0.962 0.006 0.005 0.007 12 I 0.013 0.005 0.010 0.953 0.003 0.008 0.008 13 I 0.012 0.002 0.015 0.942 0.003 0.017 0.009 14 Q 0.007 0.001 0.025 0.930 0.005 0.023 0.009 15 E 0.005 0.002 0.022 0.892 0.015 0.037 0.028 16 S 0.005 0.002 0.017 0.887 0.011 0.044 0.034 17 L 0.004 0.003 0.019 0.925 0.015 0.014 0.020 18 D 0.002 0.001 0.044 0.896 0.006 0.046 0.007 19 E 0.001 0.001 0.050 0.774 0.018 0.147 0.009 20 L 0.002 0.002 0.029 0.317 0.027 0.610 0.013 21 N 0.003 0.004 0.004 0.034 0.056 0.757 0.141 22 V 0.011 0.010 0.001 0.008 0.050 0.005 0.916 23 S 0.060 0.059 0.002 0.031 0.020 0.003 0.826 24 L 0.001 0.001 0.013 0.975 0.001 0.004 0.005 25 R 0.001 0.001 0.015 0.977 0.001 0.004 0.002 26 E 0.001 0.001 0.006 0.989 0.001 0.003 0.002 27 F 0.001 0.001 0.002 0.994 0.001 0.002 0.001 28 A 0.001 0.001 0.003 0.992 0.001 0.003 0.001 29 R 0.001 0.001 0.003 0.985 0.001 0.010 0.001 30 A 0.001 0.001 0.008 0.922 0.004 0.061 0.003 31 M 0.003 0.003 0.009 0.502 0.035 0.424 0.025 32 E 0.002 0.003 0.005 0.036 0.051 0.752 0.152 33 I 0.007 0.017 0.001 0.003 0.156 0.006 0.810 34 A 0.010 0.011 0.001 0.004 0.018 0.002 0.954 35 P 0.001 0.001 0.117 0.844 0.004 0.027 0.007 36 S 0.001 0.001 0.092 0.882 0.003 0.020 0.003 37 T 0.001 0.001 0.050 0.926 0.001 0.016 0.006 38 A 0.001 0.001 0.003 0.989 0.001 0.005 0.002 39 S 0.001 0.001 0.003 0.990 0.001 0.005 0.001 40 R 0.001 0.001 0.004 0.988 0.001 0.006 0.001 41 L 0.001 0.001 0.003 0.986 0.001 0.007 0.002 42 L 0.003 0.003 0.007 0.938 0.005 0.037 0.007 43 T 0.001 0.001 0.008 0.525 0.013 0.445 0.008 44 G 0.002 0.001 0.011 0.245 0.041 0.631 0.068 45 K 0.015 0.011 0.046 0.187 0.159 0.123 0.458 46 A 0.049 0.017 0.064 0.106 0.183 0.145 0.436 47 A 0.050 0.015 0.028 0.043 0.115 0.095 0.653 48 L 0.040 0.068 0.003 0.020 0.080 0.015 0.774 49 T 0.011 0.018 0.001 0.010 0.029 0.002 0.930 50 P 0.001 0.001 0.010 0.980 0.001 0.008 0.001 51 E 0.001 0.001 0.005 0.991 0.001 0.003 0.001 52 M 0.001 0.001 0.006 0.992 0.001 0.002 0.001 53 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 54 I 0.001 0.001 0.001 0.993 0.001 0.006 0.001 55 K 0.001 0.001 0.001 0.984 0.001 0.015 0.001 56 L 0.001 0.001 0.001 0.984 0.001 0.012 0.002 57 S 0.003 0.001 0.002 0.979 0.004 0.008 0.003 58 V 0.002 0.001 0.004 0.980 0.001 0.010 0.002 59 V 0.002 0.001 0.006 0.931 0.004 0.053 0.003 60 I 0.003 0.002 0.009 0.602 0.015 0.356 0.013 61 G 0.006 0.003 0.006 0.079 0.110 0.621 0.176 62 S 0.010 0.011 0.002 0.015 0.296 0.024 0.643 63 S 0.007 0.010 0.001 0.023 0.085 0.007 0.867 64 P 0.001 0.001 0.010 0.954 0.004 0.026 0.005 65 Q 0.001 0.001 0.015 0.961 0.003 0.018 0.002 66 M 0.001 0.001 0.018 0.966 0.002 0.007 0.005 67 W 0.002 0.001 0.005 0.978 0.002 0.008 0.004 68 L 0.002 0.001 0.007 0.951 0.004 0.032 0.003 69 N 0.002 0.001 0.010 0.893 0.007 0.078 0.009 70 L 0.005 0.002 0.022 0.863 0.015 0.059 0.035 71 Q 0.005 0.003 0.043 0.863 0.019 0.041 0.025 72 N 0.003 0.001 0.045 0.782 0.019 0.124 0.025 73 A 0.002 0.001 0.027 0.832 0.022 0.101 0.015 74 W 0.010 0.004 0.010 0.775 0.071 0.063 0.068 75 S 0.020 0.009 0.011 0.527 0.041 0.075 0.317 76 L 0.007 0.001 0.012 0.913 0.008 0.028 0.030 77 A 0.008 0.001 0.009 0.947 0.007 0.016 0.012 78 E 0.016 0.001 0.011 0.941 0.003 0.011 0.015 79 A 0.017 0.001 0.011 0.936 0.004 0.016 0.016 80 E 0.023 0.002 0.012 0.910 0.011 0.021 0.020 81 K 0.013 0.001 0.010 0.885 0.012 0.062 0.017 82 T 0.006 0.001 0.007 0.799 0.028 0.102 0.057 83 V 0.011 0.006 0.005 0.603 0.114 0.100 0.161 84 D 0.018 0.005 0.008 0.284 0.095 0.101 0.490 85 V 0.018 0.003 0.038 0.569 0.065 0.090 0.217 86 S 0.033 0.003 0.066 0.615 0.050 0.085 0.149 87 R 0.081 0.010 0.085 0.559 0.048 0.066 0.152 88 L 0.155 0.010 0.058 0.457 0.042 0.057 0.221 89 R 0.285 0.008 0.043 0.353 0.047 0.056 0.209 90 R 0.419 0.013 0.029 0.284 0.033 0.044 0.179 91 L 0.422 0.014 0.018 0.206 0.039 0.031 0.270 92 V 0.394 0.019 0.018 0.167 0.037 0.053 0.312 93 T 0.286 0.015 0.029 0.144 0.076 0.083 0.369 94 Q 0.161 0.012 0.034 0.089 0.210 0.111 0.383 95 S 0.089 0.015 0.027 0.051 0.226 0.146 0.447 96 T 0.026 0.008 0.007 0.012 0.051 0.024 0.871 97 P 0.004 0.001 0.001 0.001 0.004 0.002 0.987