# List of top-scoring protein chains for T0310.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 1.91e-63 c.82.1.1 86556 1vluA 468 1.25e-55 c.82.1.1 108864 1ad3A 452 5.58e-51 1ad3A c.82.1.1 35335 1euhA 475 1.80e-44 1euhA c.82.1.1 35369 1bxsA 501 2.00e-44 1bpwA c.82.1.1 35357 1t90A 486 3.69e-44 2esdA 475 3.88e-44 1a4sA 503 4.42e-44 1bpwA c.82.1.1 35361 2d4eA 515 9.72e-44 1qi1A 475 1.42e-43 1euhA c.82.1.1 35381 1ag8A 499 1.57e-43 1bpwA c.82.1.1 35341 1cw3A 494 2.63e-43 1bpwA c.82.1.1 35349 1o02A 500 2.63e-43 c.82.1.1 86499 1zumA 500 3.09e-43 1bi9A 499 6.97e-43 1bpwA c.82.1.1 35337 1o9jA 501 1.84e-42 c.82.1.1 86694 1o04A 500 1.98e-42 c.82.1.1 86508 1uzbA 516 2.09e-42 c.82.1.1 100220 2bjkA 516 2.95e-42 1wndA 495 1.30e-40 1ky8A 501 2.85e-36 c.82.1.1 77628 1uxvA 501 4.21e-36 c.82.1.1 108127 1uxtA 501 4.30e-36 c.82.1.1 108125 1ez0A 510 1.01e-19 1eyyA c.82.1.1 35385 1amuA 563 4.32e-01 1amuA e.23.1.1 43351 2csgA 424 7.62e-01 1vkdA 338 1.62e+00 b.67.2.4 108644 1pv1A 299 2.53e+00 2cxcA 144 2.71e+00 1rlhA 173 5.12e+00 d.256.1.1 97646 1cjbA 231 6.40e+00 1qk3A c.61.1.1 34079 2be3A 226 9.35e+00 1iy8A 267 1.00e+01 c.2.1.2 83774 1itkA 731 1.10e+01 a.93.1.3,a.93.1.3 71417,71418 1vhdA 371 1.13e+01 e.22.1.2 100667 1o2dA 371 1.15e+01 e.22.1.2 86591 1y5eA 169 1.30e+01 1xdzA 240 1.37e+01 1suwA 249 1.54e+01 e.52.1.1 106027 1kvu 338 1.72e+01 1xel c.2.1.2 29794 1udc 338 1.78e+01 1xel c.2.1.2 29785 1udb 338 1.82e+01 1xel c.2.1.2 29787 1lrkA 338 1.82e+01 c.2.1.2 74225 1kvs 338 1.85e+01 1xel c.2.1.2 29799 1z0sA 278 1.91e+01 2c60A 111 1.92e+01 1kvt 338 1.93e+01 1xel c.2.1.2 29798 1ulzA 451 1.94e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1s2mA 400 1.99e+01 1a9y 338 2.01e+01 1xel c.2.1.2 29789 1mwvA 714 2.07e+01 a.93.1.3,a.93.1.3 85161,85162 1kvr 338 2.08e+01 1xel c.2.1.2 29793 1x7uA 748 2.13e+01 1a9z 338 2.14e+01 1xel c.2.1.2 29795 1kvq 338 2.21e+01 1xel c.2.1.2 29797 1a8q 274 2.35e+01 1brt c.69.1.12 34702 1sro 76 2.47e+01 1sro b.40.4.5 25327 1fsu 492 2.57e+01 1auk c.76.1.2 35032 2d1sA 548 2.74e+01 2d1tA 548 2.86e+01 1zxxA 319 2.90e+01 1gp6A 356 2.91e+01 b.82.2.1 65441 1s1iB 253 2.95e+01 i.1.1.1 105176 2etvA 346 3.13e+01 1umhA 184 3.42e+01 b.18.1.21 99605 1e3iA 376 3.52e+01 2ohxA b.35.1.2,c.2.1.1 24741,29757 1w93A 553 3.76e+01 1w96A 554 3.77e+01 1e3lA 376 3.82e+01 2ohxA b.35.1.2,c.2.1.1 24745,29761 1umiA 184 3.98e+01 b.18.1.21 99606 1wwkA 307 4.12e+01 1dl2A 511 4.23e+01 1dl2A a.102.2.1 18844 1g6iA 545 4.80e+01 a.102.2.1 83272 1lox 662 4.84e+01 1lox a.119.1.2,b.12.1.1 19238,23638 1ea9C 583 4.87e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1dceB 331 5.16e+01 1dceB a.102.4.3 18872 1cjcA 460 5.28e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1urjA 1136 5.30e+01 1ujcA 161 5.35e+01 8dfr 189 5.39e+01 1aoeA c.71.1.1 34895 1v8gA 329 5.70e+01 a.46.2.1,c.27.1.1 100505,100506 1kr0A 273 5.83e+01 c.1.8.5 68845 1kqzA 273 5.88e+01 c.1.8.5 68844 1e1oA 504 5.91e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1ypwA 806 5.96e+01 1r7rA 816 5.99e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 1vorP 111 6.08e+01 1oglA 283 6.17e+01 a.204.1.1 92922 1nwyM 113 6.19e+01 i.1.1.2 86357 1nkwM 114 6.21e+01 i.1.1.2 80598 1fhs 112 6.30e+01 1griA d.93.1.1 40488 1r2kA 169 6.40e+01 c.57.1.1 104781 1mkzA 172 6.46e+01 c.57.1.1 84998 1u83A 276 6.59e+01 c.1.27.1 107732 1zatA 250 6.72e+01 1qg1E 104 6.74e+01 1griA d.93.1.1 40489 1ghu 107 6.76e+01 1griA d.93.1.1 40475 1kr1A 273 6.83e+01 c.1.8.5 68846 1bm2A 117 6.84e+01 1griA d.93.1.1 40467 1fyrA 114 6.96e+01 1griA d.93.1.1 40469 1bmbA 123 7.22e+01 1griA d.93.1.1 40466 1x4nA 92 7.24e+01 1z83A 196 7.30e+01 2hvm 273 7.38e+01 1cnv c.1.8.5 28985 7odcA 424 7.61e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1vkbA 161 7.64e+01 d.269.1.1 108643 1g61A 228 7.64e+01 1g61A d.126.1.1 41126 1u5iA 700 7.65e+01 1df0A 700 7.67e+01 1dkvA a.39.1.8,b.14.1.1,d.3.1.3 17375,23674,37106 1hkyA 86 7.76e+01 g.10.1.3 76714 1wy0A 342 8.01e+01 1l2pA 61 8.07e+01 f.23.21.1 73509 1bc6 77 8.45e+01 1a6l d.58.1.2 38986 1yqqA 277 8.59e+01 2ap9A 299 8.69e+01 1i4uA 181 8.71e+01 b.60.1.1 61732 1ve4A 206 8.98e+01