# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 2.12e-56 c.82.1.1 86556 1ad3A 452 6.62e-46 1ad3A c.82.1.1 35335 1bxsA 501 2.53e-41 1bpwA c.82.1.1 35357 1bpwA 503 3.59e-41 1bpwA c.82.1.1 35365 1a4sA 503 3.76e-41 1bpwA c.82.1.1 35361 1euhA 475 6.32e-41 1euhA c.82.1.1 35369 1ag8A 499 8.93e-41 1bpwA c.82.1.1 35341 1qi6A 475 9.44e-41 1euhA c.82.1.1 35373 1o04A 500 1.03e-40 c.82.1.1 86508 1uzbA 516 4.19e-39 c.82.1.1 100220 2bjkA 516 6.51e-39 1wndA 495 1.24e-37 1uxtA 501 4.30e-34 c.82.1.1 108125 1ez0A 510 8.35e-21 1eyyA c.82.1.1 35385 1eyyA 510 1.13e-20 1eyyA c.82.1.1 35389 1k75A 434 2.78e-05 c.82.1.2 68253 1kaeA 434 6.29e-05 c.82.1.2 72247 1vmaA 306 3.69e-01 a.24.13.1,c.37.1.10 108887,108888 1dt9A 437 8.79e-01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 1iugA 352 1.27e+00 c.67.1.3 90699 1vbkA 307 1.85e+00 2g8lA 299 2.69e+00 1fz1C 389 4.06e+00 1mtyB a.25.1.2 16746 1suwA 249 4.31e+00 e.52.1.1 106027 2ax3A 502 4.75e+00 1mtyB 384 5.15e+00 1mtyB a.25.1.2 16740 1n97A 389 5.29e+00 a.104.1.1 80335 3pfk 319 5.78e+00 3pfk c.89.1.1 35581 1lzjA 292 6.76e+00 c.68.1.9 74352 1zxxA 319 7.71e+00 1vecA 206 7.77e+00 c.37.1.19 100575 1efuB 282 7.88e+00 1efuB d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 2breA 219 7.89e+00 1tdj 514 8.07e+00 1tdj c.79.1.1,d.58.18.2,d.58.18.2 35297,39356,39357 6pfkA 319 8.33e+00 3pfk c.89.1.1 35583 1mwvA 714 9.31e+00 a.93.1.3,a.93.1.3 85161,85162 1z0sA 278 9.35e+00 1tqnA 486 9.87e+00 a.104.1.1 107238 8dfr 189 9.93e+00 1aoeA c.71.1.1 34895 1gs5A 258 1.00e+01 c.73.1.2 70395 1xviA 275 1.06e+01 4pfk 319 1.07e+01 3pfk c.89.1.1 35582 2brcA 214 1.12e+01 1itkA 731 1.13e+01 a.93.1.3,a.93.1.3 71417,71418 1nrzA 164 1.13e+01 c.38.1.1 86131 1i19A 561 1.15e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1n7oA 721 1.23e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1vl4A 447 1.25e+01 d.283.1.1 108718 2cw9A 194 1.26e+01 1eguA 731 1.28e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1zchA 255 1.31e+01 1eypA 222 1.34e+01 1eypA d.36.1.1 38536 1lxkA 721 1.35e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 1lfpA 249 1.39e+01 e.39.1.1 73885 1kmvA 186 1.44e+01 c.71.1.1 72757 1jepA 222 1.51e+01 d.36.1.1 66612 2azeB 106 1.55e+01 1eyqA 222 1.58e+01 1eypA d.36.1.1 38534 1igwA 434 1.64e+01 c.1.12.7 62370 2br9A 234 1.66e+01 1ss4A 153 1.74e+01 d.32.1.6 105976 1zu4A 320 1.76e+01 1j6oA 268 1.76e+01 c.1.9.12 77088 1o0wA 252 1.81e+01 a.149.1.1,d.50.1.1 80751,80752 1mhyB 395 1.87e+01 1mtyB a.25.1.2 16781 1ooyA 481 1.92e+01 c.124.1.3,c.124.1.2 93388,93389 1qjbA 245 1.94e+01 1qjaA a.118.7.1 19202 2dkaA 544 2.03e+01 1mmoB 384 2.09e+01 1mtyB a.25.1.2 16768 1m8jA 181 2.09e+01 c.26.1.3 84875 2ng1 293 2.25e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1u46A 291 2.28e+01 d.144.1.7 107656 1rzrA 332 2.30e+01 1amw 214 2.35e+01 1yer d.122.1.1 41093 1vhwA 253 2.43e+01 c.56.2.1 100706 1am1 213 2.47e+01 1yer d.122.1.1 41095 1ah6 220 2.61e+01 1yer d.122.1.1 41094 1khdA 345 2.77e+01 a.46.2.1,c.27.1.1 77400,77401 1z5zA 271 2.78e+01 1gxlA 213 2.88e+01 d.215.1.1 70713 1sro 76 2.94e+01 1sro b.40.4.5 25327 1mjfA 281 2.99e+01 c.66.1.17 79198 1aoeA 192 3.00e+01 1aoeA c.71.1.1 34923 1ffh 294 3.01e+01 1ng1 a.24.13.1,c.37.1.10 16960,32271 1zkjA 359 3.04e+01 1jpnA 296 3.10e+01 a.24.13.1,c.37.1.10 67039,67040 1evyA 366 3.10e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1i86A 389 3.12e+01 c.95.1.2,c.95.1.2 66068,66069 1yarH 217 3.13e+01 2rveA 244 3.19e+01 1rvaA c.52.1.2 33283 1a5z 319 3.24e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1zrzA 364 3.30e+01 1k66A 149 3.44e+01 c.23.1.1 90941 1a4h 230 3.54e+01 1yer d.122.1.1 41099 1knzA 164 3.57e+01 e.34.1.1 68709 2fiuA 99 3.62e+01 1v8gA 329 3.65e+01 a.46.2.1,c.27.1.1 100505,100506 2fjbA 643 3.80e+01 1ls1A 295 3.80e+01 a.24.13.1,c.37.1.10 78170,78171 1jnrA 643 3.85e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2fkkA 206 4.00e+01 1pmaP 211 4.01e+01 1pmaP d.153.1.4 41863 1ej2A 181 4.01e+01 1f9aA c.26.1.3 59414 1bi5A 389 4.02e+01 1bi5A c.95.1.2,c.95.1.2 35985,35986 1wwpA 119 4.04e+01 1n6bA 473 4.04e+01 a.104.1.1 85359 1nf2A 268 4.13e+01 c.108.1.10 91849 1ddzA 496 4.23e+01 1ddzA c.53.2.1,c.53.2.1 33372,33373 1aep 161 4.26e+01 1aep a.63.1.1 18139 1dl5A 317 4.29e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1j4wA 174 4.35e+01 d.51.1.1,d.51.1.1 71529,71530 2es9A 115 4.35e+01 1bmlC 362 4.52e+01 1bmlC d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1hqkA 154 4.55e+01 c.16.1.1 65902 1u7lA 392 4.56e+01 1q3eA 207 4.57e+01 b.82.3.2 95669 1ecsA 126 4.67e+01 1ecsA d.32.1.2 59407 1kq8A 100 4.73e+01 a.4.5.14 68797 1l0oA 150 4.73e+01 d.122.1.3 73403 1fxzA 476 4.80e+01 b.82.1.2,b.82.1.2 65059,65060 1hybA 181 4.82e+01 1f9aA c.26.1.3 61399 1dyr 206 4.82e+01 1aoeA c.71.1.1 34916 1mswD 883 4.88e+01 e.8.1.3 79427 2fbwC 141 4.96e+01 1fp2A 352 5.01e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1o9lA 481 5.08e+01 c.124.1.2,c.124.1.3 81241,81242 1lopA 164 5.34e+01 2cpl b.62.1.1 27510 1s62A 106 5.50e+01 1ugpA 203 5.52e+01 d.149.1.1 107831 1ra9 159 5.62e+01 1vdrA c.71.1.1 34820 1wekA 217 5.73e+01 2cgpA 210 5.75e+01 2cgpA a.4.5.4,b.82.3.2 16102,28141 1eluB 390 5.81e+01 1elqA c.67.1.3 34435 1eluA 390 5.81e+01 1elqA c.67.1.3 34434 1w78A 422 5.82e+01 1sxgA 280 5.83e+01 1gu7A 364 5.94e+01 b.35.1.2,c.2.1.1 83321,83322 1nr6A 473 5.95e+01 a.104.1.1 92085 6dfr 159 5.95e+01 1vdrA c.71.1.1 34874 1xdzA 240 5.98e+01 1i88A 389 6.07e+01 c.95.1.2,c.95.1.2 66070,66071 1afsA 323 6.15e+01 1frb c.1.7.1 28694 1zbtA 371 6.15e+01 1cjbA 231 6.20e+01 1qk3A c.61.1.1 34079 1lkdA 297 6.24e+01 d.32.1.3,d.32.1.3 78059,78060 1w6kA 732 6.27e+01 3eugA 229 6.28e+01 3eugA c.18.1.1 31018 1ewjA 126 6.28e+01 1ecsA d.32.1.2 59526 1i6xA 209 6.31e+01 a.4.5.4,b.82.3.2 83673,83674 1dhy 292 6.33e+01 1han d.32.1.3,d.32.1.3 38504,38505 1rkd 309 6.35e+01 1rkd c.72.1.1 34928 1yo3A 102 6.38e+01 1vcsA 102 6.38e+01 2au3A 407 6.38e+01 1ywqA 200 6.42e+01 2cruA 118 6.51e+01 1inlA 296 6.52e+01 c.66.1.17 66220 1lgtA 297 6.58e+01 d.32.1.3,d.32.1.3 77956,77957 1k2xA 177 6.60e+01 d.153.1.5 90929 1jq3A 296 6.61e+01 c.66.1.17 67079 1gxjA 186 6.62e+01 d.215.1.1 70707 1w36C 1122 6.78e+01 1elqA 390 6.78e+01 1elqA c.67.1.3 34436 1cmiA 85 6.78e+01 1cmiA d.39.1.1 38551 1iq4A 179 6.79e+01 1iq4A d.77.1.1 62641 1zjjA 263 6.79e+01 1sfxA 109 6.88e+01 a.4.5.50 105505 1tu3F 79 6.90e+01 2ajtA 500 6.98e+01 1ir6A 424 7.02e+01 c.107.1.2 71342 1c96A 753 7.05e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1x0oA 119 7.07e+01 1l2pA 61 7.08e+01 f.23.21.1 73509 1qjaA 245 7.12e+01 1qjaA a.118.7.1 19204 1qgxA 357 7.24e+01 1qgxA e.7.1.1 42973 1ee4A 423 7.27e+01 1ee4A a.118.1.1 19128 1ireA 204 7.33e+01 d.149.1.1 76769 1ef1A 294 7.33e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1ri7A 171 7.34e+01 a.4.5.32,d.58.4.2 97504,97505 6acn 754 7.37e+01 1amj c.8.2.1,c.83.1.1 30721,35397 1uxjA 309 7.38e+01 c.2.1.5,d.162.1.1 108112,108113 1yxcA 292 7.40e+01 2b0jA 358 7.42e+01 1mrj 247 7.49e+01 1mrj d.165.1.1 42177 1npdA 288 7.60e+01 c.2.1.7,c.58.1.5 80681,80682 2bj7A 138 7.65e+01 1han 297 7.69e+01 1han d.32.1.3,d.32.1.3 38506,38507 1zh5A 195 7.71e+01 1jobA 162 7.74e+01 1f35A b.94.1.1 63207 1xqsA 280 7.80e+01 1amj 754 7.87e+01 1amj c.8.2.1,c.83.1.1 30725,35401 1f35A 162 7.87e+01 1f35A b.94.1.1 59628 1ahc 246 7.90e+01 1mrj d.165.1.1 42184 1igs 248 7.93e+01 1a53 c.1.2.4 28565 1kw3B 292 7.98e+01 d.32.1.3,d.32.1.3 77549,77550 1zdzA 302 7.98e+01 1wy1A 172 8.01e+01 1u5kA 244 8.02e+01 1f8mA 429 8.03e+01 1dquA c.1.12.7 29315 1b0jA 754 8.06e+01 1amj c.8.2.1,c.83.1.1 30719,35395 1jogA 146 8.08e+01 a.24.16.2 77142 7acn 754 8.11e+01 1amj c.8.2.1,c.83.1.1 30717,35393 2b05A 246 8.13e+01 1uetA 437 8.22e+01 a.160.1.3,d.218.1.7,d.58.16.2 99272,99273,99274 8acn 754 8.22e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1nuyA 337 8.32e+01 e.7.1.1 86213 1draA 159 8.33e+01 1vdrA c.71.1.1 34831 1ck7A 631 8.47e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 2gasA 307 8.57e+01 3fruA 269 8.61e+01 1agdA b.1.1.2,d.19.1.1 20657,38150 1k1eA 180 8.64e+01 c.108.1.5 67995 1ng1 294 8.71e+01 1ng1 a.24.13.1,c.37.1.10 16961,32272 1cr6B 554 8.72e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 1ojhA 65 8.73e+01 a.214.1.1 103976 1ur5A 309 8.75e+01 c.2.1.5,d.162.1.1 99807,99808 1su4A 994 8.77e+01 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 98993,98994,98995,98996 1xg7A 250 8.99e+01