# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o20A 427 2.34e-68 c.82.1.1 86556 1ad3A 452 2.19e-55 1ad3A c.82.1.1 35335 1bxsA 501 2.64e-49 1bpwA c.82.1.1 35357 1euhA 475 7.84e-49 1euhA c.82.1.1 35369 1a4sA 503 9.22e-49 1bpwA c.82.1.1 35361 1bpwA 503 9.61e-49 1bpwA c.82.1.1 35365 1qi6A 475 1.21e-48 1euhA c.82.1.1 35373 1ag8A 499 1.27e-48 1bpwA c.82.1.1 35341 1o04A 500 9.90e-48 c.82.1.1 86508 1uzbA 516 7.76e-47 c.82.1.1 100220 2bjkA 516 1.49e-46 1wndA 495 8.21e-45 1uxtA 501 1.63e-40 c.82.1.1 108125 1ez0A 510 7.21e-25 1eyyA c.82.1.1 35385 1eyyA 510 7.70e-25 1eyyA c.82.1.1 35389 1k75A 434 4.38e-06 c.82.1.2 68253 1kaeA 434 9.42e-06 c.82.1.2 72247 1dt9A 437 2.35e-01 1dt9A c.55.4.2,d.79.3.2,d.91.1.1 33738,39815,40257 4pfk 319 4.07e-01 3pfk c.89.1.1 35582 6pfkA 319 4.09e-01 3pfk c.89.1.1 35583 3pfk 319 4.23e-01 3pfk c.89.1.1 35581 1suwA 249 5.76e-01 e.52.1.1 106027 1v8gA 329 6.94e-01 a.46.2.1,c.27.1.1 100505,100506 1i19A 561 9.00e-01 1i19A d.58.32.3,d.145.1.1 61522,61523 1vbkA 307 1.16e+00 1j6oA 268 1.99e+00 c.1.9.12 77088 1z0sA 278 2.25e+00 1vecA 206 2.28e+00 c.37.1.19 100575 1kzhA 555 2.75e+00 c.89.1.1 73361 1a8q 274 3.35e+00 1brt c.69.1.12 34702 1kqzA 273 3.92e+00 c.1.8.5 68844 1efuB 282 4.69e+00 1efuB d.43.1.1,a.5.2.2,d.43.1.1 38677,58975,58976 2dkaA 544 5.91e+00 1ng1 294 6.00e+00 1ng1 a.24.13.1,c.37.1.10 16961,32272 1gs5A 258 6.04e+00 c.73.1.2 70395 1ss4A 153 6.09e+00 d.32.1.6 105976 1kqyA 273 6.15e+00 c.1.8.5 68843 2b1xA 470 6.36e+00 1cqzA 554 7.03e+00 1cr6B c.69.1.11,c.108.1.2 34689,43339 1u7lA 392 7.29e+00 1zxxA 319 7.94e+00 1iugA 352 8.04e+00 c.67.1.3 90699 1vmaA 306 8.88e+00 a.24.13.1,c.37.1.10 108887,108888 1n97A 389 9.03e+00 a.104.1.1 80335 1vhwA 253 1.10e+01 c.56.2.1 100706 2fkkA 206 1.11e+01 8dfr 189 1.12e+01 1aoeA c.71.1.1 34895 2ng1 293 1.18e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1n2zA 245 1.19e+01 c.92.2.2 79865 1xdzA 240 1.27e+01 1cr6B 554 1.28e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 1qjbA 245 1.35e+01 1qjaA a.118.7.1 19202 1edi 56 1.37e+01 1fc2C a.8.1.1 16349 1ffh 294 1.40e+01 1ng1 a.24.13.1,c.37.1.10 16960,32271 1vq3A 94 1.43e+01 1k87A 669 1.47e+01 a.176.1.1,c.1.23.2 77286,77287 1n7oA 721 1.55e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1ri7A 171 1.56e+01 a.4.5.32,d.58.4.2 97504,97505 1sro 76 1.68e+01 1sro b.40.4.5 25327 2hvm 273 1.71e+01 1cnv c.1.8.5 28985 1ls1A 295 1.75e+01 a.24.13.1,c.37.1.10 78170,78171 1t6eX 381 1.90e+01 b.50.1.2 106564 1xviA 275 1.92e+01 8abp 306 1.92e+01 8abp c.93.1.1 35647 1db2A 377 1.92e+01 1sek e.1.1.1 42672 2ajtA 500 1.93e+01 1ubpA 101 1.98e+01 1ubpA d.8.1.1 37353 1zjjA 263 1.99e+01 1nrzA 164 2.03e+01 c.38.1.1 86131 2fz4A 237 2.11e+01 1f3vA 179 2.13e+01 1f3vA d.58.22.1 39382 1tqnA 486 2.15e+01 a.104.1.1 107238 1a88A 275 2.19e+01 1brt c.69.1.12 34707 2etvA 346 2.23e+01 2breA 219 2.25e+01 1fts 295 2.32e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 2cw9A 194 2.32e+01 1jpnA 296 2.40e+01 a.24.13.1,c.37.1.10 67039,67040 1oi7A 288 2.47e+01 c.2.1.8,c.23.4.1 87049,87050 2brcA 214 2.49e+01 1rzrA 332 2.50e+01 4ubpA 101 2.50e+01 1ubpA d.8.1.1 37352 1khdA 345 2.51e+01 a.46.2.1,c.27.1.1 77400,77401 1kmvA 186 2.55e+01 c.71.1.1 72757 1lzjA 292 2.57e+01 c.68.1.9 74352 1o0wA 252 2.61e+01 a.149.1.1,d.50.1.1 80751,80752 5abp 306 2.64e+01 8abp c.93.1.1 35651 1ek1A 554 2.70e+01 1cr6B c.69.1.11,c.108.1.2 34685,43335 1bxrA 1073 2.73e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18570,31499,31697,31698,41542,41543 2fjbA 643 2.76e+01 1eypA 222 2.79e+01 1eypA d.36.1.1 38536 1eguA 731 2.81e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1ugpA 203 2.82e+01 d.149.1.1 107831 2liv 344 2.89e+01 2liv c.93.1.1 35708 1w96A 554 2.91e+01 1s62A 106 2.91e+01 1draA 159 2.92e+01 1vdrA c.71.1.1 34831 2c2aA 258 2.92e+01 1vl4A 447 2.93e+01 d.283.1.1 108718 1am1 213 2.94e+01 1yer d.122.1.1 41095 1kq8A 100 2.96e+01 a.4.5.14 68797 1sxgA 280 3.05e+01 1din 236 3.06e+01 1din c.69.1.9 34682 1cs0C 1073 3.12e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18559,31488,31675,31676,41520,41521 2azeB 106 3.22e+01 1ir6A 424 3.25e+01 c.107.1.2 71342 1jepA 222 3.26e+01 d.36.1.1 66612 2br9A 234 3.26e+01 1ra9 159 3.31e+01 1vdrA c.71.1.1 34820 1ejxA 100 3.34e+01 d.8.1.1 83182 1fwcA 100 3.34e+01 1ubpA d.8.1.1 37331 2kauA 100 3.34e+01 1ubpA d.8.1.1 37335 1mhyB 395 3.38e+01 1mtyB a.25.1.2 16781 2bj7A 138 3.40e+01 1eyqA 222 3.41e+01 1eypA d.36.1.1 38534 1bap 306 3.52e+01 8abp c.93.1.1 35654 1gxjA 186 3.52e+01 d.215.1.1 70707 1xqsA 280 3.56e+01 1zu4A 320 3.64e+01 2gjsA 176 3.76e+01 1gu7A 364 3.77e+01 b.35.1.2,c.2.1.1 83321,83322 1aoeA 192 3.78e+01 1aoeA c.71.1.1 34923 1m3uA 264 3.80e+01 c.1.12.8 84784 1ireA 204 3.84e+01 d.149.1.1 76769 1evyA 366 3.89e+01 1evyA a.100.1.6,c.2.1.6 18811,30215 1wekA 217 3.93e+01 1a4h 230 3.95e+01 1yer d.122.1.1 41099 1y5eA 169 3.98e+01 1xqrA 296 4.00e+01 1k66A 149 4.02e+01 c.23.1.1 90941 1ah6 220 4.04e+01 1yer d.122.1.1 41094 1ddzA 496 4.07e+01 1ddzA c.53.2.1,c.53.2.1 33372,33373 1ml4A 308 4.09e+01 c.78.1.1,c.78.1.1 79255,79256 1lj5A 379 4.14e+01 e.1.1.1 73928 1lxkA 721 4.15e+01 a.102.3.2,b.24.1.1,b.30.5.2 74331,74332,74333 2ax3A 502 4.19e+01 2an1A 292 4.19e+01 1cjbA 231 4.29e+01 1qk3A c.61.1.1 34079 1afsA 323 4.31e+01 1frb c.1.7.1 28694 1rj9A 304 4.45e+01 a.24.13.1,c.37.1.10 97553,97554 1juk 248 4.47e+01 1a53 c.1.2.4 28567 1xkyA 301 4.51e+01 1z15A 344 4.53e+01 1nf2A 268 4.55e+01 c.108.1.10 91849 1o5kA 306 4.55e+01 c.1.10.1 92504 1x42A 232 4.68e+01 4dfrA 159 4.70e+01 1vdrA c.71.1.1 34822 1rw6A 210 4.70e+01 a.47.4.1 105113 2be3A 226 4.77e+01 1bmlC 362 4.77e+01 1bmlC d.15.5.1,d.15.5.1,d.15.5.1 37729,37730,37731 1tu3F 79 4.79e+01 1jnyA 435 4.99e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1k68A 140 5.00e+01 c.23.1.1 90943 2rveA 244 5.04e+01 1rvaA c.52.1.2 33283 1jnrA 643 5.10e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1ck7A 631 5.11e+01 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1qvaA 223 5.12e+01 1qvaA c.37.1.19 32411 1sfxA 109 5.13e+01 a.4.5.50 105505 1xrkA 124 5.32e+01 1u2wA 122 5.34e+01 1gxlA 213 5.38e+01 d.215.1.1 70713 1big 37 5.42e+01 1sco g.3.7.2 44145 1zi8A 236 5.43e+01 1amw 214 5.47e+01 1yer d.122.1.1 41093 1a7cA 379 5.50e+01 1sek e.1.1.1 42660 1vddA 228 5.54e+01 e.49.1.1 108519 1ggvA 232 5.57e+01 1din c.69.1.9 34683 1dbqA 289 5.62e+01 1qpzA c.93.1.1 35666 1ecsA 126 5.62e+01 1ecsA d.32.1.2 59407 1igwA 434 5.62e+01 c.1.12.7 62370 1ywqA 200 5.65e+01 1mgpA 313 5.73e+01 c.119.1.1 79098 1tdj 514 5.82e+01 1tdj c.79.1.1,d.58.18.2,d.58.18.2 35297,39356,39357 1m41A 380 5.91e+01 c.1.16.4 78595 1abe 306 5.93e+01 8abp c.93.1.1 35648 1wy7A 207 5.94e+01 1cfr 285 5.95e+01 1cfr c.52.1.7 33312 1itkA 731 5.98e+01 a.93.1.3,a.93.1.3 71417,71418 1zchA 255 5.99e+01 6dfr 159 5.99e+01 1vdrA c.71.1.1 34874 2avnA 260 6.06e+01 1jbwA 428 6.08e+01 c.59.1.2,c.72.2.2 62860,62861 2d0iA 333 6.08e+01 1y81A 138 6.15e+01 2cruA 118 6.20e+01 2g8lA 299 6.21e+01 1hkyA 86 6.27e+01 g.10.1.3 76714 1m8jA 181 6.29e+01 c.26.1.3 84875 1dhy 292 6.38e+01 1han d.32.1.3,d.32.1.3 38504,38505 1k2xA 177 6.41e+01 d.153.1.5 90929 2cvjA 180 6.42e+01 1knzA 164 6.43e+01 e.34.1.1 68709 1ecpA 238 6.43e+01 1ecpA c.56.2.1 33775 1rypD 241 6.45e+01 1rypD d.153.1.4 41935 1j4wA 174 6.47e+01 d.51.1.1,d.51.1.1 71529,71530 1qgxA 357 6.60e+01 1qgxA e.7.1.1 42973 1jr1A 514 6.69e+01 c.1.5.1,d.37.1.1,d.37.1.1 63241,63242,63243 1rypH 205 6.85e+01 d.153.1.4 41876 6acn 754 6.88e+01 1amj c.8.2.1,c.83.1.1 30721,35397 1g0u1 266 6.92e+01 1ntr 124 6.99e+01 1dbwA c.23.1.1 31092 1igs 248 7.03e+01 1a53 c.1.2.4 28565 1mjfA 281 7.03e+01 c.66.1.17 79198 1r31A 428 7.05e+01 d.58.20.1,d.179.1.1 96897,96898 1a53 247 7.07e+01 1a53 c.1.2.4 28564 1i1gA 141 7.12e+01 a.4.5.32,d.58.4.2 65982,65983 1u46A 291 7.15e+01 d.144.1.7 107656 1t5oA 351 7.24e+01 c.124.1.5 106459 1deeG 54 7.37e+01 1fc2C a.8.1.1 16343 1dyr 206 7.46e+01 1aoeA c.71.1.1 34916 1z7mA 344 7.51e+01 1grj 158 7.54e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1bu2A 229 7.57e+01 1bu2A a.74.1.1,a.74.1.1 18360,18361 2fvhA 120 7.60e+01 1q6uA 245 7.71e+01 d.26.1.1 95998 1han 297 7.81e+01 1han d.32.1.3,d.32.1.3 38506,38507 1lkdA 297 7.81e+01 d.32.1.3,d.32.1.3 78059,78060 1wod 233 7.87e+01 1wod c.94.1.1 35832 1zh5A 195 7.94e+01 1c3oA 1073 8.01e+01 1c3oA a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18562,31491,31681,31682,41526,41527 1imjA 210 8.02e+01 c.69.1.23 71246 1v4vA 376 8.12e+01 c.87.1.3 100313 1keeA 1073 8.12e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 68492,68493,68494,68495,68496,68497 1dl5A 317 8.23e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1o9lA 481 8.23e+01 c.124.1.2,c.124.1.3 81241,81242 1mswD 883 8.24e+01 e.8.1.3 79427 1lfpA 249 8.24e+01 e.39.1.1 73885 1hl8A 449 8.29e+01 b.71.1.3,c.1.8.11 90646,90647 2bvfA 459 8.32e+01 1fxzA 476 8.35e+01 b.82.1.2,b.82.1.2 65059,65060 1f60A 458 8.38e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1lgtA 297 8.40e+01 d.32.1.3,d.32.1.3 77956,77957 1ewjA 126 8.41e+01 1ecsA d.32.1.2 59526 1u6mA 199 8.43e+01 1k9sA 237 8.47e+01 c.56.2.1 68359 1mwvA 714 8.51e+01 a.93.1.3,a.93.1.3 85161,85162 1l2pA 61 8.52e+01 f.23.21.1 73509 1qy5A 269 8.53e+01 d.122.1.1 96573 1ka1A 357 8.62e+01 e.7.1.1 68369 2ci1A 275 8.77e+01 2tmdA 729 8.77e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 2fiuA 99 8.78e+01 1u55A 188 8.79e+01 d.278.1.1 107677 1gnlA 544 8.88e+01 e.26.1.1 70287 1q6hA 224 8.90e+01 d.26.1.1 95975 1hl9A 449 8.94e+01 b.71.1.3,c.1.8.11 90650,90651