# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 1.83e-45 c.82.1.1 86508 1euhA 475 2.61e-41 1euhA c.82.1.1 35369 1uzbA 516 7.53e-40 c.82.1.1 100220 2bjkA 516 7.69e-40 1o20A 427 3.08e-38 c.82.1.1 86556 1uxtA 501 2.19e-36 c.82.1.1 108125 1ez0A 510 2.46e-26 1eyyA c.82.1.1 35385 1kaeA 434 3.09e-09 c.82.1.2 72247 1nrzA 164 5.50e-01 c.38.1.1 86131 1ls1A 295 6.63e-01 a.24.13.1,c.37.1.10 78170,78171 1cqxA 403 1.19e+00 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1f3vA 179 3.17e+00 1f3vA d.58.22.1 39382 1lfpA 249 3.31e+00 e.39.1.1 73885 1gs5A 258 3.54e+00 c.73.1.2 70395 1vbkA 307 4.40e+00 1sek 378 4.80e+00 1sek e.1.1.1 42675 1fuiA 591 5.20e+00 1fuiA b.43.2.1,c.85.1.1 25674,35444 2bllA 345 5.46e+00 1p0hA 318 6.01e+00 d.108.1.1 93866 1z0sA 278 6.46e+00 1g8mA 593 6.79e+00 1g8mA c.24.1.3,c.97.2.1 60371,60372 1cfr 285 7.68e+00 1cfr c.52.1.7 33312 1suwA 249 7.88e+00 e.52.1.1 106027 1nqkA 381 8.38e+00 c.1.16.4 92050 1mucA 373 8.45e+00 1mucA c.1.11.2,d.54.1.1 29236,38880 2cw5A 255 8.60e+00 1vmaA 306 1.02e+01 a.24.13.1,c.37.1.10 108887,108888 1wr8A 231 1.03e+01 1xviA 275 1.04e+01 1mla 309 1.19e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1bqcA 302 1.21e+01 1bqcA c.1.8.3 28831 2ezvA 269 1.21e+01 1gudA 288 1.24e+01 c.93.1.1 83326 1gvhA 396 1.24e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1wtjA 343 1.25e+01 1in0A 163 1.40e+01 d.58.49.1,d.58.49.1 83694,83695 1kk1A 410 1.43e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1iq4A 179 1.44e+01 1iq4A d.77.1.1 62641 2bjbA 462 1.50e+01 1y81A 138 1.56e+01 1jwiB 125 1.60e+01 d.169.1.1 67384 2gjsA 176 1.61e+01 1jztA 246 1.66e+01 c.104.1.1 63319 1uv0A 149 1.70e+01 d.169.1.1 100028 1c3cA 429 1.75e+01 1c3cA a.127.1.1 19425 1vh6A 145 1.77e+01 a.24.19.1 100644 1x42A 232 1.78e+01 1t6cA 315 1.81e+01 c.55.1.8,c.55.1.8 106558,106559 2ajtA 500 1.82e+01 1hqkA 154 1.86e+01 c.16.1.1 65902 1ywqA 200 2.00e+01 1m8jA 181 2.21e+01 c.26.1.3 84875 2bb6A 414 2.23e+01 1i3cA 149 2.31e+01 c.23.1.1 71112 1vajA 214 2.32e+01 1g5aA 628 2.34e+01 b.71.1.1,c.1.8.1 65152,65153 1p5dX 463 2.34e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1bykA 255 2.38e+01 1bykA c.93.1.1 35706 1f60A 458 2.42e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1lt8A 406 2.45e+01 c.1.26.1 78186 1wteA 272 2.49e+01 1jqnA 883 2.59e+01 c.1.12.3 77159 2c2nA 339 2.60e+01 8abp 306 2.60e+01 8abp c.93.1.1 35647 2br9A 234 2.68e+01 1ej2A 181 2.83e+01 1f9aA c.26.1.3 59414 1zvpA 133 2.95e+01 1ci9A 392 3.07e+01 e.3.1.1 64767 2fbwC 141 3.08e+01 1xffA 240 3.11e+01 d.153.1.1 109580 2gp4A 628 3.18e+01 1wu7A 434 3.20e+01 1srvA 145 3.24e+01 1derA c.8.5.1 30817 1h4vB 421 3.24e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1z7lA 276 3.46e+01 1uujA 88 3.53e+01 a.221.1.1 108046 2c78A 405 3.55e+01 1k5dB 201 3.56e+01 b.55.1.3 68169 1d1gA 168 3.63e+01 1d1gA c.71.1.1 34889 2fymA 431 3.64e+01 2c27A 315 3.71e+01 1ujnA 348 3.74e+01 e.22.1.1 99460 2pth 193 3.94e+01 2pth c.56.3.1 33793 1vbiA 344 3.95e+01 1kllA 130 4.11e+01 d.32.1.2 72720 2gasA 307 4.19e+01 1r9kA 172 4.19e+01 a.168.1.1 104869 1t6eX 381 4.20e+01 b.50.1.2 106564 2g8lA 299 4.21e+01 1nw3A 416 4.24e+01 c.66.1.31 86288 1jkmB 361 4.26e+01 1jkmA c.69.1.2 34634 1wekA 217 4.37e+01 1f35A 162 4.37e+01 1f35A b.94.1.1 59628 1hc7A 477 4.45e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1w8sA 263 4.51e+01 1zedA 484 4.54e+01 1vcsA 102 4.68e+01 1uehA 253 4.71e+01 c.101.1.1 99259 1gx5A 536 4.73e+01 e.8.1.4 70682 2a5yB 549 4.78e+01 1qopB 396 4.81e+01 2tysB c.79.1.1 35270 2erxA 172 4.81e+01 1zu4A 320 4.85e+01 1vb3A 428 4.95e+01 2bykB 128 4.96e+01 1pw4A 451 5.03e+01 f.38.1.1 95198 1xknA 355 5.06e+01 1urvA 190 5.11e+01 2dri 271 5.18e+01 2dri c.93.1.1 35637 1q3eA 207 5.21e+01 b.82.3.2 95669 1zrn 232 5.32e+01 1qq5A c.108.1.1 43323 1zs9A 261 5.51e+01 1ta8A 332 5.52e+01 1j34A 129 5.54e+01 d.169.1.1 84048 1h8uA 117 5.55e+01 1h8uA d.169.1.1 60793 1xx1A 285 5.58e+01 1t5oA 351 5.66e+01 c.124.1.5 106459 1vpjA 192 5.66e+01 2fy7A 287 5.84e+01 1g6sA 427 5.85e+01 1eps d.68.2.2 39584 1zt3A 80 5.88e+01 2bw3A 534 6.04e+01 1vecA 206 6.07e+01 c.37.1.19 100575 1pii 452 6.17e+01 1pii c.1.2.4,c.1.2.4 28559,28563 2dc3A 193 6.17e+01 1knzA 164 6.21e+01 e.34.1.1 68709 2bvfA 459 6.22e+01 1r64A 481 6.25e+01 b.18.1.20,c.41.1.1 97140,97141 1wiwA 290 6.26e+01 1tp9A 162 6.27e+01 1tf5A 844 6.31e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 106834,106835,106836,106837 2f4lA 297 6.32e+01 1jnyA 435 6.35e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1atg 231 6.55e+01 1atg c.94.1.1 35834 1dqpA 230 6.77e+01 1dqnA c.61.1.1 34069 2b9wA 424 6.78e+01 1xxlA 239 6.87e+01 1v7pB 128 6.95e+01 d.169.1.1 108407 1lldA 319 7.05e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1upaA 573 7.24e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 1y5eA 169 7.26e+01 1mrg 263 7.26e+01 1mrj d.165.1.1 42183 1mtyB 384 7.35e+01 1mtyB a.25.1.2 16740 1r9dA 787 7.36e+01 c.7.1.1 104865 1s62A 106 7.45e+01 1nv8A 284 7.45e+01 c.66.1.30 86224 1s7zA 117 7.47e+01 a.159.3.1 98715 1nbaA 264 7.64e+01 1nbaA c.33.1.3 31753 1vqoV 71 7.68e+01 1a53 247 7.68e+01 1a53 c.1.2.4 28564 2bjnA 160 7.84e+01 1lam 484 7.84e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1wxxA 382 7.85e+01 1ceo 343 7.90e+01 1ceo c.1.8.3 28808 2g62A 325 7.90e+01 1qwgA 251 7.93e+01 c.1.27.1 96473 1sx5A 244 7.96e+01 c.52.1.2 99023 1gxmA 332 7.99e+01 a.102.5.1 76371 2bj7A 138 8.05e+01 1qlmA 316 8.15e+01 1qlmA d.147.1.1 41765 1atzA 189 8.21e+01 1atzA c.62.1.1 34132 1otkA 249 8.24e+01 a.25.1.2 93521 1ysjA 404 8.38e+01 1x1tA 260 8.42e+01 2fjbA 643 8.42e+01 1nxuA 333 8.49e+01 c.122.1.1 86389 1s3eA 520 8.53e+01 c.3.1.2,d.16.1.5 98426,98427 1nw1A 429 8.56e+01 d.144.1.8 86286 1q5xA 161 8.57e+01 c.8.7.1 95947 1r4xA 275 8.59e+01 b.1.10.3,d.105.1.2 97054,97055 1jnrA 643 8.64e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1wyuA 438 8.64e+01 1xkgA 312 8.66e+01 1n7oA 721 8.87e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261