# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 2.43e-68 c.82.1.1 86508 1euhA 475 3.30e-61 1euhA c.82.1.1 35369 1uzbA 516 5.64e-59 c.82.1.1 100220 2bjkA 516 7.83e-59 1o20A 427 1.18e-58 c.82.1.1 86556 1uxtA 501 3.95e-55 c.82.1.1 108125 1ez0A 510 1.60e-41 1eyyA c.82.1.1 35385 1kaeA 434 9.08e-13 c.82.1.2 72247 1hqkA 154 7.67e-02 c.16.1.1 65902 1f3vA 179 2.51e-01 1f3vA d.58.22.1 39382 1ls1A 295 3.75e-01 a.24.13.1,c.37.1.10 78170,78171 1gx5A 536 4.12e-01 e.8.1.4 70682 1z0sA 278 1.04e+00 1y5eA 169 1.08e+00 1w19A 160 1.46e+00 1wcrA 103 1.53e+00 1wd5A 208 1.60e+00 1b00A 127 1.73e+00 3chy c.23.1.1 31122 1u7pA 164 1.79e+00 1r0mA 375 1.95e+00 c.1.11.2,d.54.1.1 104747,104748 1wwkA 307 2.06e+00 1sx5A 244 2.19e+00 c.52.1.2 99023 1wbhA 214 2.59e+00 1o1zA 234 2.62e+00 c.1.18.3 86555 1t6eX 381 2.72e+00 b.50.1.2 106564 1imjA 210 3.39e+00 c.69.1.23 71246 2g2dA 193 3.40e+00 2bnmA 198 3.56e+00 1uv0A 149 3.81e+00 d.169.1.1 100028 1zq9A 285 3.86e+00 1suwA 249 4.32e+00 e.52.1.1 106027 1x42A 232 4.38e+00 1qtwA 285 4.66e+00 1qumA c.1.15.1 29392 1w0dA 337 4.94e+00 1yxmA 303 5.35e+00 1v6sA 390 5.68e+00 c.86.1.1 100424 1z2lA 423 5.75e+00 2cxcA 144 5.78e+00 1zmtA 254 5.87e+00 1lkdA 297 5.94e+00 d.32.1.3,d.32.1.3 78059,78060 1uw4B 248 5.97e+00 a.118.1.14 100072 1eziA 228 6.13e+00 1eyrA c.68.1.13 34512 1p1xA 260 6.43e+00 c.1.10.1 104060 1nnfA 309 6.62e+00 c.94.1.1 85903 1kw3B 292 6.74e+00 d.32.1.3,d.32.1.3 77549,77550 1kjqA 391 6.84e+00 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1eumA 165 6.87e+00 1eumA a.25.1.1 59507 1vpjA 192 7.01e+00 1xizA 159 7.62e+00 1fyeA 229 7.78e+00 1fyeA c.23.16.4 31477 2gasA 307 7.79e+00 1orjA 130 7.81e+00 a.24.19.1 93456 1ng6A 148 7.89e+00 a.182.1.1 85670 1b8dA 164 8.30e+00 1cpcA a.1.1.3 15665 1l7aA 318 8.52e+00 c.69.1.25 77772 1vl4A 447 8.75e+00 d.283.1.1 108718 1k66A 149 8.84e+00 c.23.1.1 90941 1vqoV 71 9.00e+00 1xg4A 295 9.04e+00 1fl2A 310 9.11e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 2f06A 144 9.35e+00 1wyuA 438 9.69e+00 1nrzA 164 9.72e+00 c.38.1.1 86131 1in0A 163 9.89e+00 d.58.49.1,d.58.49.1 83694,83695 1cliA 345 1.02e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1n2zA 245 1.02e+01 c.92.2.2 79865 1t0bA 252 1.04e+01 c.23.16.6 106199 1t2bA 397 1.10e+01 1yb3A 175 1.11e+01 1vdmA 153 1.12e+01 2f4lA 297 1.13e+01 1vrmA 325 1.15e+01 1ta8A 332 1.16e+01 1m2dA 110 1.24e+01 c.47.1.11 78476 2oatA 439 1.27e+01 2dkb c.67.1.4 34452 1lj5A 379 1.29e+01 e.1.1.1 73928 1w8sA 263 1.30e+01 1gxjA 186 1.32e+01 d.215.1.1 70707 1v77A 212 1.33e+01 c.6.3.2 108402 2d0iA 333 1.35e+01 1ockA 412 1.38e+01 c.117.1.1 86802 1uwkA 557 1.38e+01 e.51.1.1 108065 1zczA 464 1.39e+01 1jztA 246 1.43e+01 c.104.1.1 63319 1gvhA 396 1.45e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 8abp 306 1.46e+01 8abp c.93.1.1 35647 1vggA 161 1.47e+01 1dl5A 317 1.48e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1r7lA 110 1.48e+01 d.277.1.1 104837 1hh1A 143 1.55e+01 1gefA c.52.1.18 61036 1wloA 136 1.56e+01 8dfr 189 1.57e+01 1aoeA c.71.1.1 34895 2a7oA 112 1.58e+01 1nnlA 225 1.60e+01 c.108.1.4 85906 1m4iA 181 1.61e+01 d.108.1.1 74457 2ah5A 210 1.61e+01 1xqoA 256 1.64e+01 1sfe 180 1.65e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1xc3A 302 1.67e+01 2bogX 286 1.67e+01 1o9rA 162 1.70e+01 a.25.1.1 86706 1kngA 156 1.70e+01 c.47.1.10 72777 1squA 155 1.71e+01 d.252.1.1 98971 1m3uA 264 1.71e+01 c.1.12.8 84784 2b0cA 206 1.82e+01 3daaA 277 1.92e+01 1daaA e.17.1.1 43272 1fmcA 255 1.99e+01 1cydA c.2.1.2 29856 1ra0A 430 1.99e+01 1jtvA 327 2.02e+01 c.2.1.2 84230 1zchA 255 2.02e+01 1swvA 267 2.03e+01 1rkd 309 2.04e+01 1rkd c.72.1.1 34928 1cqxA 403 2.06e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1olmA 403 2.07e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1xc1A 309 2.09e+01 c.94.1.1 109543 1jmvA 141 2.09e+01 c.26.2.4 66897 1byfA 125 2.18e+01 1byfA d.169.1.1 42419 1oi7A 288 2.19e+01 c.2.1.8,c.23.4.1 87049,87050 1qlwA 328 2.21e+01 1qlwA c.69.1.15 34722 2e2aA 105 2.22e+01 a.7.2.1 88499 1dpsA 167 2.23e+01 1dpsA a.25.1.1 16716 1nv8A 284 2.24e+01 c.66.1.30 86224 1yloA 348 2.27e+01 1ymtA 246 2.27e+01 2a61A 145 2.28e+01 1j8mF 297 2.31e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1k7jA 206 2.33e+01 d.115.1.1 72103 1gqiA 708 2.40e+01 c.1.8.10,d.92.2.2 76279,76280 1j6oA 268 2.49e+01 c.1.9.12 77088 2be3A 226 2.57e+01 2ck3D 482 2.60e+01 2ah6A 208 2.63e+01 1uc2A 481 2.64e+01 d.261.1.1 99161 2ajtA 500 2.65e+01 1axn 323 2.67e+01 1avc a.65.1.1 18149 1pwxA 254 2.67e+01 c.2.1.2 95262 1l8dA 112 2.70e+01 h.4.12.1 73687 1xg8A 111 2.71e+01 5nul 138 2.71e+01 5nul c.23.5.1 31191 2af4C 333 2.73e+01 1h8eD 482 2.75e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1af7 274 2.76e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1vhwA 253 2.80e+01 c.56.2.1 100706 1f0kA 364 2.82e+01 1f0kA c.87.1.2 35465 1txgA 335 2.83e+01 1a8rA 221 2.85e+01 1a8rA d.96.1.1 40587 2csgA 424 2.86e+01 2fueA 262 2.88e+01 1vk9A 151 2.90e+01 c.139.1.1 108640 1y4tA 322 2.92e+01 1mgtA 174 2.99e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 2br9A 234 3.03e+01 2b5hA 200 3.03e+01 1zd7A 159 3.05e+01 1ymqA 261 3.15e+01 1kwmA 402 3.16e+01 c.56.5.1,d.58.3.1 73079,73080 1bc5A 269 3.17e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1vljA 407 3.18e+01 e.22.1.2 108832 1ygtA 111 3.20e+01 1hf8A 289 3.21e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1f20A 435 3.21e+01 b.43.4.1,c.25.1.4 64932,64933 1vcsA 102 3.24e+01 1mqvA 125 3.33e+01 a.24.3.2 79415 1qf5A 431 3.42e+01 1adeA c.37.1.10 32212 1y81A 138 3.43e+01 1azsA 220 3.43e+01 1azsA d.58.29.1 39416 1lnwA 147 3.44e+01 a.4.5.28 78104 1uesA 191 3.47e+01 a.2.11.1,d.44.1.1 107798,107799 1a53 247 3.48e+01 1a53 c.1.2.4 28564 1r64A 481 3.50e+01 b.18.1.20,c.41.1.1 97140,97141 1pujA 282 3.53e+01 c.37.1.8 88294 2f62A 161 3.54e+01 1mucA 373 3.55e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 2az0A 73 3.58e+01 1bebA 162 3.59e+01 1bebA b.60.1.1 27115 1vrvA 101 3.69e+01 1qlmA 316 3.70e+01 1qlmA d.147.1.1 41765 1u0fA 564 3.72e+01 1mvoA 136 3.75e+01 c.23.1.1 79513 1ez3A 127 3.76e+01 1dn1B a.47.2.1 17768 1vzwA 244 3.82e+01 1r88A 280 3.84e+01 c.69.1.3 97219 1ra6A 461 3.98e+01 e.8.1.4 104879 1a59 378 3.99e+01 1aj8A a.103.1.1 18902 1vhsA 175 4.03e+01 d.108.1.1 100698 2ar0A 541 4.06e+01 1l3iA 192 4.08e+01 c.66.1.22 77676 2fp4B 395 4.08e+01 1nq7A 244 4.09e+01 a.123.1.1 92047 1i36A 264 4.13e+01 a.100.1.8,c.2.1.6 71108,71109 1aisA 182 4.14e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1t0tV 248 4.22e+01 d.58.4.10 106229 1zxxA 319 4.28e+01 1wrvA 308 4.33e+01 2amlA 373 4.37e+01 2cwkA 160 4.38e+01 1s68A 249 4.40e+01 d.142.2.4 98591 1ct5A 256 4.41e+01 1ct5A c.1.6.2 28663 1q9uA 130 4.41e+01 d.129.7.1 96314 1h5wA 309 4.42e+01 e.27.1.1 65635 1wy0A 342 4.45e+01 1zl0A 311 4.48e+01 1knvA 293 4.49e+01 c.52.1.7 68707 1zu4A 320 4.52e+01 1v54E 109 4.52e+01 a.118.11.1 100326 2ca6A 386 4.53e+01 1quuA 250 4.53e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1p5fA 189 4.66e+01 c.23.16.2 94142 2bsjA 133 4.72e+01 1sgjA 284 4.81e+01 c.1.12.5 105535 1jkmB 361 4.84e+01 1jkmA c.69.1.2 34634 1xlqA 106 4.89e+01 1zdyA 307 4.93e+01 1mlwA 301 5.00e+01 d.178.1.1 79289 1vjoA 393 5.07e+01 c.67.1.3 100827 1mla 309 5.12e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1jnyA 435 5.14e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1i19A 561 5.15e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1ldjA 760 5.19e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1mhqA 148 5.19e+01 a.118.9.2 84973 1o5kA 306 5.20e+01 c.1.10.1 92504 1j7xA 302 5.21e+01 c.14.1.2 66425 1ooeA 236 5.36e+01 c.2.1.2 87196 1mj3A 260 5.40e+01 c.14.1.3 79183 1edt 271 5.41e+01 2ebn c.1.8.5 28993 1m9xC 146 5.44e+01 a.73.1.1 84907 1ua4A 455 5.49e+01 c.72.1.3 99128 1oc2A 348 5.54e+01 c.2.1.2 92765 1pl4A 198 5.57e+01 a.2.11.1,d.44.1.1 94854,94855 2fctA 313 5.59e+01 1yhlA 362 5.60e+01 1i2kA 269 5.67e+01 e.17.1.1 90661 1gzsB 165 5.72e+01 a.168.1.1 76425 2bikB 313 5.73e+01 2g09A 297 5.74e+01 1hbnC 248 5.76e+01 1mroC d.58.31.1 60902 1s7zA 117 5.80e+01 a.159.3.1 98715 1yozA 116 5.84e+01 2cxnA 557 5.93e+01 1m12A 84 5.94e+01 a.64.1.1 84745 1wv2A 265 5.95e+01 2bhoA 130 6.08e+01 1d4oA 184 6.08e+01 1d4oA c.31.1.4 31748 2ew8A 249 6.10e+01 2g7sA 194 6.28e+01 1thtA 305 6.33e+01 1thtA c.69.1.13 34711 1oqqA 106 6.37e+01 d.15.4.1 93422 1knwA 425 6.40e+01 b.49.2.3,c.1.6.1 90969,90970 1t13A 158 6.41e+01 1zhvA 134 6.43e+01 1ewkA 490 6.44e+01 1ewkA c.93.1.1 35712 1jbeA 128 6.45e+01 3chy c.23.1.1 62845 2f6kA 307 6.46e+01 1wi9A 72 6.51e+01 1ihuA 589 6.53e+01 c.37.1.10,c.37.1.10 62394,62395 1uliA 460 6.66e+01 b.33.1.2,d.129.3.3 107921,107922 1qxoA 388 6.66e+01 d.258.1.1 96539 1sauA 115 6.71e+01 1wmaA 276 6.74e+01 1qhtA 775 6.77e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1gpjA 404 6.90e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xffA 240 6.93e+01 d.153.1.1 109580 1hyeA 313 6.98e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1i27A 73 7.07e+01 1i27A a.4.5.30 61555 1dfuP 94 7.11e+01 1dfuP b.53.1.1 26936 1qlpA 394 7.16e+01 1ovaA e.1.1.1 42628 1gz2A 142 7.18e+01 d.169.1.1 83392 1hf2A 210 7.27e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1zejA 293 7.29e+01 1sjdA 368 7.35e+01 c.1.11.2,d.54.1.1 105632,105633 1wy9A 147 7.43e+01 1dbfA 127 7.44e+01 2chsA d.79.1.2 39761 1tc1A 220 7.49e+01 1tc1A c.61.1.1 34083 1vmbA 140 7.50e+01 2fl4A 149 7.50e+01 1lhpA 312 7.57e+01 c.72.1.5 77960 2aegA 268 7.61e+01 1v8dA 235 7.61e+01 c.140.1.1 108425 1x7oA 287 7.62e+01 1kwfA 363 7.67e+01 a.102.1.2 73078 1r6fA 310 7.75e+01 e.46.1.1 97149 5eau 548 7.76e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1ewfA 456 7.79e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1kgsA 225 7.86e+01 a.4.6.1,c.23.1.1 68596,68597 1js8A 394 7.90e+01 a.86.1.1,b.112.1.1 67219,67220 1dofA 403 8.03e+01 1c3cA a.127.1.1 19429 1n00A 321 8.07e+01 a.65.1.1 85241 1dj7A 117 8.08e+01 1dj7A g.36.1.1 44997 1aocA 175 8.08e+01 1aocA g.17.1.5 44817 1dozA 309 8.11e+01 1ak1 c.92.1.1 35592 1ywqA 200 8.15e+01 1evsA 187 8.18e+01 1evsA a.26.1.1 16845 1tqhA 247 8.19e+01 c.69.1.29 107225 1y9uA 323 8.20e+01 2go7A 207 8.25e+01 1ptf 88 8.30e+01 1ptf d.94.1.1 40549 2c2xA 281 8.31e+01 1div 149 8.33e+01 1div d.99.1.1,d.100.1.1 40692,40693 1r4xA 275 8.33e+01 b.1.10.3,d.105.1.2 97054,97055 2c2nA 339 8.34e+01 2bklA 695 8.37e+01 1vbiA 344 8.50e+01 1nxuA 333 8.56e+01 c.122.1.1 86389 2b8tA 223 8.56e+01 1xcrA 316 8.56e+01 1u69A 163 8.57e+01 d.32.1.7 107699 1yx1A 264 8.69e+01 1u7eB 154 8.82e+01 1f0yA 302 8.86e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197