# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o04A 500 6.04e-58 c.82.1.1 86508 1euhA 475 4.57e-53 1euhA c.82.1.1 35369 1o20A 427 3.82e-52 c.82.1.1 86556 2bjkA 516 7.37e-48 1uzbA 516 1.49e-47 c.82.1.1 100220 1uxtA 501 9.23e-47 c.82.1.1 108125 1ez0A 510 6.76e-36 1eyyA c.82.1.1 35385 1kaeA 434 4.75e-08 c.82.1.2 72247 1r0mA 375 2.76e-01 c.1.11.2,d.54.1.1 104747,104748 1hqkA 154 2.58e+00 c.16.1.1 65902 1nq7A 244 3.42e+00 a.123.1.1 92047 1gx5A 536 4.83e+00 e.8.1.4 70682 1nnfA 309 7.49e+00 c.94.1.1 85903 1sx5A 244 8.15e+00 c.52.1.2 99023 1fyeA 229 8.91e+00 1fyeA c.23.16.4 31477 1m12A 84 1.20e+01 a.64.1.1 84745 1eumA 165 1.22e+01 1eumA a.25.1.1 59507 1qf5A 431 1.24e+01 1adeA c.37.1.10 32212 1wp5A 323 1.25e+01 2af4C 333 1.45e+01 1uesA 191 1.50e+01 a.2.11.1,d.44.1.1 107798,107799 1urjA 1136 1.62e+01 1p5fA 189 1.68e+01 c.23.16.2 94142 1m4iA 181 1.70e+01 d.108.1.1 74457 1suwA 249 1.74e+01 e.52.1.1 106027 1t6eX 381 1.80e+01 b.50.1.2 106564 1x42A 232 1.83e+01 2br9A 234 1.87e+01 1ra6A 461 2.13e+01 e.8.1.4 104879 1w19A 160 2.19e+01 1jkmB 361 2.25e+01 1jkmA c.69.1.2 34634 1ozhA 566 2.27e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1mw5A 187 2.36e+01 d.259.1.1 91477 1xg8A 111 2.37e+01 1sjdA 368 2.37e+01 c.1.11.2,d.54.1.1 105632,105633 1o1zA 234 2.49e+01 c.1.18.3 86555 2f6kA 307 2.84e+01 2ab0A 205 2.88e+01 1u4gA 301 2.96e+01 d.92.1.2 107670 1b00A 127 3.00e+01 3chy c.23.1.1 31122 1v7bA 185 3.04e+01 2ganA 190 3.10e+01 1ua4A 455 3.15e+01 c.72.1.3 99128 1jztA 246 3.22e+01 c.104.1.1 63319 1qi9A 556 3.34e+01 1qhbA a.111.1.2 19053 1m2dA 110 3.41e+01 c.47.1.11 78476 1q42A 201 3.45e+01 d.17.4.2 95776 1vkdA 338 3.47e+01 b.67.2.4 108644 2ah5A 210 3.47e+01 1srvA 145 3.47e+01 1derA c.8.5.1 30817 1pv1A 299 3.63e+01 1wwkA 307 3.73e+01 2oatA 439 3.77e+01 2dkb c.67.1.4 34452 1wz8A 264 3.95e+01 1ldjA 760 4.00e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1a4iA 301 4.05e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1n6aA 259 4.14e+01 b.76.2.1,b.85.7.1 80121,80122 1h6tA 291 4.18e+01 b.1.18.15,c.10.2.1 65686,65687 1tzjA 338 4.21e+01 1kllA 130 4.38e+01 d.32.1.2 72720 1kk1A 410 4.51e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1wiwA 290 4.74e+01 1ewfA 456 4.87e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1eziA 228 5.02e+01 1eyrA c.68.1.13 34512 2cwkA 160 5.13e+01 2d0iA 333 5.16e+01 2fd5A 180 5.17e+01 1u0fA 564 5.38e+01 1ci9A 392 5.44e+01 e.3.1.1 64767 2f94F 350 5.48e+01 1cliA 345 5.81e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1kjqA 391 5.85e+01 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1r03A 182 5.87e+01 a.25.1.1 104675 1xizA 159 5.92e+01 1af7 274 5.92e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1lj5A 379 5.92e+01 e.1.1.1 73928 1aqzA 149 5.96e+01 1aqzA d.1.1.3 36238 1nrzA 164 6.01e+01 c.38.1.1 86131 1f3vA 179 6.31e+01 1f3vA d.58.22.1 39382 1s7zA 117 6.33e+01 a.159.3.1 98715 1adt 356 6.36e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1bqcA 302 6.42e+01 1bqcA c.1.8.3 28831 1ls1A 295 6.47e+01 a.24.13.1,c.37.1.10 78170,78171 1mucA 373 6.61e+01 1mucA c.1.11.2,d.54.1.1 29236,38880 1qo2A 241 6.65e+01 1qo2A c.1.2.1 28533 1wy0A 342 6.81e+01 1knvA 293 6.82e+01 c.52.1.7 68707 1k6dA 220 6.96e+01 c.124.1.2 72082 1z0sA 278 6.97e+01 1j8mF 297 6.97e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1cqxA 403 7.09e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1s7iA 124 7.10e+01 d.58.4.9 105353 2f69A 261 7.11e+01 2bnmA 198 7.21e+01 2fr1A 486 7.28e+01 1go3E 187 7.34e+01 b.40.4.5,d.230.1.1 83054,83055 8dfr 189 7.47e+01 1aoeA c.71.1.1 34895 1sv6A 269 7.58e+01 d.177.1.1 106043 1vmaA 306 7.88e+01 a.24.13.1,c.37.1.10 108887,108888 2csgA 424 7.94e+01 1kngA 156 7.97e+01 c.47.1.10 72777 1in6A 334 8.00e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2gkeA 274 8.31e+01 1bvoA 175 8.34e+01 1a3qA b.2.5.3 22457 2fiuA 99 8.37e+01 2fp4B 395 8.47e+01 1ockA 412 8.51e+01 c.117.1.1 86802 1t2bA 397 8.55e+01 2blnA 305 8.56e+01 1zq9A 285 8.62e+01 1jyaA 130 8.93e+01 d.198.1.1 67453 2bikB 313 8.95e+01 2cxnA 557 8.98e+01