# List of top-scoring protein chains for T0310.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bxsA 501 2.67e-47 1bpwA c.82.1.1 35357 1cw3A 494 2.89e-47 1bpwA c.82.1.1 35349 1o02A 500 2.92e-47 c.82.1.1 86499 1zumA 500 3.75e-47 1bi9A 499 4.71e-47 1bpwA c.82.1.1 35337 1ag8A 499 4.87e-47 1bpwA c.82.1.1 35341 1o04A 500 2.15e-46 c.82.1.1 86508 1o9jA 501 1.14e-45 c.82.1.1 86694 1a4sA 503 2.57e-45 1bpwA c.82.1.1 35361 2d4eA 515 3.33e-45 1wndA 495 4.12e-43 1t90A 486 4.30e-39 1o20A 427 1.97e-38 c.82.1.1 86556 1euhA 475 3.00e-38 1euhA c.82.1.1 35369 2esdA 475 5.63e-38 1qi1A 475 2.61e-37 1euhA c.82.1.1 35381 1ad3A 452 3.95e-35 1ad3A c.82.1.1 35335 1uzbA 516 7.79e-34 c.82.1.1 100220 2bjkA 516 9.64e-34 1ky8A 501 1.48e-33 c.82.1.1 77628 1uxtA 501 1.67e-33 c.82.1.1 108125 1uxvA 501 1.72e-33 c.82.1.1 108127 1vluA 468 5.29e-31 c.82.1.1 108864 1ez0A 510 3.04e-18 1eyyA c.82.1.1 35385 1kaeA 434 1.03e+00 c.82.1.2 72247 1jroB 777 2.02e+00 d.41.1.1,d.133.1.1 67141,67142 1s1iB 253 5.88e+00 i.1.1.1 105176 1mb4A 370 9.51e+00 c.2.1.3,d.81.1.1 78908,78909 2cxcA 144 1.07e+01 1wwkA 307 1.09e+01 1ctm 250 1.24e+01 1hcz b.2.6.1,b.84.2.2 22465,28251 1hcz 252 1.31e+01 1hcz b.2.6.1,b.84.2.2 22464,28250 1ypwA 806 1.38e+01 1d2gA 292 1.44e+01 1xvaA c.66.1.5 34187 1r7rA 816 1.47e+01 b.52.2.3,c.37.1.20,c.37.1.20,d.31.1.1 97203,97204,97205,97206 1xvaA 292 1.71e+01 1xvaA c.66.1.5 34183 2cfyA 521 1.75e+01 1t7lA 766 1.76e+01 1xpgA 765 1.76e+01 1xdjA 766 1.87e+01 8tlnE 316 2.12e+01 1hyt d.92.1.2 59075 1kjoA 316 2.18e+01 d.92.1.2 77419 1w8sA 263 2.38e+01 1gu9A 177 2.51e+01 a.152.1.1 65540 2gf2A 296 2.56e+01 1ceqA 316 2.72e+01 1ceqA c.2.1.5,d.162.1.1 30163,42130 1drbA 159 2.74e+01 1vdrA c.71.1.1 34828 1ldg 316 2.75e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 2a94A 321 2.86e+01 1t2dA 322 2.87e+01 c.2.1.5,d.162.1.1 99084,99085 1xivA 323 2.87e+01 1me5A 177 2.93e+01 a.152.1.1 79024 1sr9A 644 2.98e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1t2eA 322 3.02e+01 c.2.1.5,d.162.1.1 99086,99087 1w8rA 263 3.08e+01 1hus 155 3.54e+01 1rss a.75.1.1 18391 1ojxA 263 3.63e+01 c.1.10.1 93164 1dhiA 159 3.83e+01 1vdrA c.71.1.1 34844 2cv4A 250 3.89e+01 1h6zA 913 3.94e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1draA 159 4.04e+01 1vdrA c.71.1.1 34831 1ddsA 159 4.05e+01 1vdrA c.71.1.1 34858 1dhjA 159 4.42e+01 1vdrA c.71.1.1 34833 1wp5A 323 4.43e+01 1x0rA 249 4.44e+01 4dfrA 159 4.47e+01 1vdrA c.71.1.1 34822 1s12A 94 4.56e+01 2drcA 159 4.67e+01 1vdrA c.71.1.1 34848 1lw1A 177 4.75e+01 a.152.1.1 74290 8dfr 189 4.76e+01 1aoeA c.71.1.1 34895 1ra9 159 4.79e+01 1vdrA c.71.1.1 34820 1yw6A 335 4.81e+01 1wy0A 342 5.55e+01 1j1uA 306 5.76e+01 c.26.1.1 83980 1u7xA 312 6.01e+01 1dceB 331 6.29e+01 1dceB a.102.4.3 18872 1urjA 1136 6.30e+01 1ynbA 173 6.30e+01 1xp8A 366 6.51e+01 1bmbA 123 6.74e+01 1griA d.93.1.1 40466 1ujnA 348 6.75e+01 e.22.1.1 99460 1bm2A 117 6.82e+01 1griA d.93.1.1 40467 1fhs 112 6.88e+01 1griA d.93.1.1 40488 2d2mB 142 7.13e+01 1yx1A 264 7.22e+01 1y7iA 268 7.25e+01 1yoyA 175 7.36e+01 1q7lA 198 7.41e+01 c.56.5.4 96044 1xklA 273 7.46e+01 2fbqA 235 7.47e+01 1r46A 398 7.49e+01 b.71.1.1,c.1.8.1 96973,96974 1fyrA 114 7.53e+01 1griA d.93.1.1 40469 1d8wA 426 7.88e+01 1de5A c.1.15.2 29394 1ghu 107 7.91e+01 1griA d.93.1.1 40475 1zbmA 280 8.01e+01 2d0kA 159 8.20e+01 1y5eA 169 8.23e+01 1qg1E 104 8.52e+01 1griA d.93.1.1 40489 1gxjA 186 8.87e+01 d.215.1.1 70707 1y81A 138 8.93e+01