CreatePredAlphaCost pred_alpha2k alpha11 T0309.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0309.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0309.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \ phobic_fit 2 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 20 backbone_clashes 2 \ break 50 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ constraints 10 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1 # from M1-G66/decoys/try1-opt2.sheets SheetConstraint H7 F15 T26 D18 hbond I9 1 SheetConstraint F14 F15 T50 I49 hbond F14 1 SheetConstraint I49 E53 V59 N55 hbond V51 1 # from M1-G66/decoys/try1-opt2.helices HelixConstraint Y31 E41 1 # from M1-E63/decoys/try1-opt2.sheets SheetConstraint H7 F15 T26 D18 hbond I9 1 # SheetConstraint N10 F15 K52 V47 hbond K12 1 SheetConstraint I49 E53 V59 N55 hbond V51 1 # from M1-E63/decoys/try1-opt2.helices HelixConstraint Y31 E41 1